data_2QKB # _entry.id 2QKB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2QKB pdb_00002qkb 10.2210/pdb2qkb/pdb NDB PH0041 ? ? RCSB RCSB043705 ? ? WWPDB D_1000043705 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2QK9 . unspecified PDB 2QKK . unspecified # _pdbx_database_status.entry_id 2QKB _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-07-10 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nowotny, M.' 1 'Gaidamakov, S.A.' 2 'Ghirlando, R.' 3 'Cerritelli, S.M.' 4 'Crouch, R.J.' 5 'Yang, W.' 6 # _citation.id primary _citation.title 'Structure of Human RNase H1 Complexed with an RNA/DNA Hybrid: Insight into HIV Reverse Transcription' _citation.journal_abbrev Mol.Cell _citation.journal_volume 28 _citation.page_first 264 _citation.page_last 276 _citation.year 2007 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17964265 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2007.08.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nowotny, M.' 1 ? primary 'Gaidamakov, S.A.' 2 ? primary 'Ghirlando, R.' 3 ? primary 'Cerritelli, S.M.' 4 ? primary 'Crouch, R.J.' 5 ? primary 'Yang, W.' 6 ? # _cell.entry_id 2QKB _cell.length_a 109.991 _cell.length_b 109.991 _cell.length_c 67.253 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QKB _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*GP*AP*GP*UP*GP*CP*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*CP*C)-3')" 6382.854 1 ? ? ? ? 2 polymer syn "5'-D(*DGP*DGP*DAP*DAP*DTP*DCP*DAP*DGP*DGP*DTP*DGP*DTP*DCP*DGP*DCP*DAP*DCP*DTP*DCP*DT)-3'" 6149.978 1 ? ? ? ? 3 polymer man 'Ribonuclease H1' 17291.861 2 3.1.26.4 D210N 'C-terminal domain (residues 134-286)' ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 6 water nat water 18.015 58 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'Hs-RNase HC; RNase H1; Ribonuclease H type II' # _entity_name_sys.entity_id 3 _entity_name_sys.name E.C.3.1.26.4 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no '(DG)GAGUGCGACACCUGAUUCC' GGAGUGCGACACCUGAUUCC C ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DA)(DA)(DT)(DC)(DA)(DG)(DG)(DT)(DG)(DT)(DC)(DG)(DC)(DA)(DC)(DT)(DC)(DT)' GGAATCAGGTGTCGCACTCT D ? 3 'polypeptide(L)' no yes ;GSH(MSE)GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLY TNS(MSE)FTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQG(MSE)DIQW(MSE)HVPGHSGFIGNEEADRL AREGAKQSED ; ;GSHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSM FTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED ; A,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 G n 1 3 A n 1 4 G n 1 5 U n 1 6 G n 1 7 C n 1 8 G n 1 9 A n 1 10 C n 1 11 A n 1 12 C n 1 13 C n 1 14 U n 1 15 G n 1 16 A n 1 17 U n 1 18 U n 1 19 C n 1 20 C n 2 1 DG n 2 2 DG n 2 3 DA n 2 4 DA n 2 5 DT n 2 6 DC n 2 7 DA n 2 8 DG n 2 9 DG n 2 10 DT n 2 11 DG n 2 12 DT n 2 13 DC n 2 14 DG n 2 15 DC n 2 16 DA n 2 17 DC n 2 18 DT n 2 19 DC n 2 20 DT n 3 1 GLY n 3 2 SER n 3 3 HIS n 3 4 MSE n 3 5 GLY n 3 6 ASP n 3 7 PHE n 3 8 VAL n 3 9 VAL n 3 10 VAL n 3 11 TYR n 3 12 THR n 3 13 ASP n 3 14 GLY n 3 15 CYS n 3 16 CYS n 3 17 SER n 3 18 SER n 3 19 ASN n 3 20 GLY n 3 21 ARG n 3 22 ARG n 3 23 ARG n 3 24 PRO n 3 25 ARG n 3 26 ALA n 3 27 GLY n 3 28 ILE n 3 29 GLY n 3 30 VAL n 3 31 TYR n 3 32 TRP n 3 33 GLY n 3 34 PRO n 3 35 GLY n 3 36 HIS n 3 37 PRO n 3 38 LEU n 3 39 ASN n 3 40 VAL n 3 41 GLY n 3 42 ILE n 3 43 ARG n 3 44 LEU n 3 45 PRO n 3 46 GLY n 3 47 ARG n 3 48 GLN n 3 49 THR n 3 50 ASN n 3 51 GLN n 3 52 ARG n 3 53 ALA n 3 54 GLU n 3 55 ILE n 3 56 HIS n 3 57 ALA n 3 58 ALA n 3 59 CYS n 3 60 LYS n 3 61 ALA n 3 62 ILE n 3 63 GLU n 3 64 GLN n 3 65 ALA n 3 66 LYS n 3 67 THR n 3 68 GLN n 3 69 ASN n 3 70 ILE n 3 71 ASN n 3 72 LYS n 3 73 LEU n 3 74 VAL n 3 75 LEU n 3 76 TYR n 3 77 THR n 3 78 ASN n 3 79 SER n 3 80 MSE n 3 81 PHE n 3 82 THR n 3 83 ILE n 3 84 ASN n 3 85 GLY n 3 86 ILE n 3 87 THR n 3 88 ASN n 3 89 TRP n 3 90 VAL n 3 91 GLN n 3 92 GLY n 3 93 TRP n 3 94 LYS n 3 95 LYS n 3 96 ASN n 3 97 GLY n 3 98 TRP n 3 99 LYS n 3 100 THR n 3 101 SER n 3 102 ALA n 3 103 GLY n 3 104 LYS n 3 105 GLU n 3 106 VAL n 3 107 ILE n 3 108 ASN n 3 109 LYS n 3 110 GLU n 3 111 ASP n 3 112 PHE n 3 113 VAL n 3 114 ALA n 3 115 LEU n 3 116 GLU n 3 117 ARG n 3 118 LEU n 3 119 THR n 3 120 GLN n 3 121 GLY n 3 122 MSE n 3 123 ASP n 3 124 ILE n 3 125 GLN n 3 126 TRP n 3 127 MSE n 3 128 HIS n 3 129 VAL n 3 130 PRO n 3 131 GLY n 3 132 HIS n 3 133 SER n 3 134 GLY n 3 135 PHE n 3 136 ILE n 3 137 GLY n 3 138 ASN n 3 139 GLU n 3 140 GLU n 3 141 ALA n 3 142 ASP n 3 143 ARG n 3 144 LEU n 3 145 ALA n 3 146 ARG n 3 147 GLU n 3 148 GLY n 3 149 ALA n 3 150 LYS n 3 151 GLN n 3 152 SER n 3 153 GLU n 3 154 ASP n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'RNASEH1, RNH1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 3 UNP RNH1_HUMAN O60930 136 ;MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTI NGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQSED ; ? 2 1 PDB 2QKB 2QKB ? ? ? 3 2 PDB 2QKB 2QKB ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QKB A 4 ? 154 ? O60930 136 ? 286 ? 136 286 2 1 2QKB B 4 ? 154 ? O60930 136 ? 286 ? 136 286 3 2 2QKB C 1 ? 20 ? 2QKB 1 ? 20 ? 1 20 4 3 2QKB D 1 ? 20 ? 2QKB 21 ? 40 ? 21 40 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QKB GLY A 1 ? UNP O60930 ? ? 'expression tag' 133 1 1 2QKB SER A 2 ? UNP O60930 ? ? 'expression tag' 134 2 1 2QKB HIS A 3 ? UNP O60930 ? ? 'expression tag' 135 3 1 2QKB ASN A 78 ? UNP O60930 ASP 210 'engineered mutation' 210 4 2 2QKB GLY B 1 ? UNP O60930 ? ? 'expression tag' 133 5 2 2QKB SER B 2 ? UNP O60930 ? ? 'expression tag' 134 6 2 2QKB HIS B 3 ? UNP O60930 ? ? 'expression tag' 135 7 2 2QKB ASN B 78 ? UNP O60930 ASP 210 'engineered mutation' 210 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QKB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 50.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '15% PEG 3350, 0.1 M LiSO4, 0.1 M Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 3350' ? ? ? 1 2 1 LiSO4 ? ? ? 1 3 1 Tris ? ? ? 1 4 2 'PEG 3350' ? ? ? 1 5 2 LiSO4 ? ? ? 1 6 2 Tris ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 2QKB _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 40 _reflns.number_all 18670 _reflns.number_obs 16949 _reflns.percent_possible_obs 90.8 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 35.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs 0.452 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.entry_id 2QKB _refine.ls_d_res_high 2.40 _refine.ls_d_res_low 40 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 18670 _refine.ls_number_reflns_obs 16949 _refine.ls_number_reflns_R_free 1680 _refine.ls_percent_reflns_obs 90.8 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.2076 _refine.ls_R_factor_R_free 0.255 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 2QK9 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean 59.3 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details 'The last round of refinement in CNS was carried out with the pucker restraints for the DNA strand removed' _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2356 _refine_hist.pdbx_number_atoms_nucleic_acid 812 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 58 _refine_hist.number_atoms_total 3244 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 40 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.012894 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.74222 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.879 1.5 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.276 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.262 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.375 2.5 ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2QKB _struct.title 'Human RNase H catalytic domain mutant D210N in complex with 20-mer RNA/DNA hybrid' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QKB _struct_keywords.pdbx_keywords HYDROLASE/DNA/RNA _struct_keywords.text 'RNase H; RNA/DNA hybrid, HYDROLASE-DNA-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 6 ? K N N 6 ? L N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR C 49 ? GLN C 68 ? THR A 181 GLN A 200 1 ? 20 HELX_P HELX_P2 2 SER C 79 ? ASN C 88 ? SER A 211 ASN A 220 1 ? 10 HELX_P HELX_P3 3 ASN C 88 ? LYS C 95 ? ASN A 220 LYS A 227 1 ? 8 HELX_P HELX_P4 4 ASN C 108 ? GLN C 120 ? ASN A 240 GLN A 252 1 ? 13 HELX_P HELX_P5 5 PHE C 135 ? LYS C 150 ? PHE A 267 LYS A 282 1 ? 16 HELX_P HELX_P6 6 THR D 49 ? GLN D 68 ? THR B 181 GLN B 200 1 ? 20 HELX_P HELX_P7 7 SER D 79 ? ASN D 88 ? SER B 211 ASN B 220 1 ? 10 HELX_P HELX_P8 8 TRP D 89 ? LYS D 94 ? TRP B 221 LYS B 226 1 ? 6 HELX_P HELX_P9 9 ASN D 108 ? THR D 119 ? ASN B 240 THR B 251 1 ? 12 HELX_P HELX_P10 10 PHE D 135 ? ALA D 149 ? PHE B 267 ALA B 281 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C HIS 3 C ? ? ? 1_555 C MSE 4 N ? ? A HIS 135 A MSE 136 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? C MSE 4 C ? ? ? 1_555 C GLY 5 N ? ? A MSE 136 A GLY 137 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale3 covale both ? C SER 79 C ? ? ? 1_555 C MSE 80 N ? ? A SER 211 A MSE 212 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale4 covale both ? C MSE 80 C ? ? ? 1_555 C PHE 81 N ? ? A MSE 212 A PHE 213 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale5 covale both ? C GLY 121 C ? ? ? 1_555 C MSE 122 N ? ? A GLY 253 A MSE 254 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale6 covale both ? C MSE 122 C ? ? ? 1_555 C ASP 123 N ? ? A MSE 254 A ASP 255 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale7 covale both ? C TRP 126 C ? ? ? 1_555 C MSE 127 N ? ? A TRP 258 A MSE 259 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale both ? C MSE 127 C ? ? ? 1_555 C HIS 128 N ? ? A MSE 259 A HIS 260 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale9 covale both ? D HIS 3 C ? ? ? 1_555 D MSE 4 N ? ? B HIS 135 B MSE 136 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale10 covale both ? D MSE 4 C ? ? ? 1_555 D GLY 5 N ? ? B MSE 136 B GLY 137 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale11 covale both ? D SER 79 C ? ? ? 1_555 D MSE 80 N ? ? B SER 211 B MSE 212 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale12 covale both ? D MSE 80 C ? ? ? 1_555 D PHE 81 N ? ? B MSE 212 B PHE 213 1_555 ? ? ? ? ? ? ? 1.315 ? ? covale13 covale both ? D GLY 121 C ? ? ? 1_555 D MSE 122 N ? ? B GLY 253 B MSE 254 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale14 covale both ? D MSE 122 C ? ? ? 1_555 D ASP 123 N ? ? B MSE 254 B ASP 255 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale15 covale both ? D TRP 126 C ? ? ? 1_555 D MSE 127 N ? ? B TRP 258 B MSE 259 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale16 covale both ? D MSE 127 C ? ? ? 1_555 D HIS 128 N ? ? B MSE 259 B HIS 260 1_555 ? ? ? ? ? ? ? 1.320 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 B DC 19 N3 ? ? C G 2 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 B DC 19 O2 ? ? C G 2 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 B DC 19 N4 ? ? C G 2 D DC 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 B DT 18 N3 ? ? C A 3 D DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 B DT 18 O4 ? ? C A 3 D DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 4 N1 ? ? ? 1_555 B DC 17 N3 ? ? C G 4 D DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 4 N2 ? ? ? 1_555 B DC 17 O2 ? ? C G 4 D DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 O6 ? ? ? 1_555 B DC 17 N4 ? ? C G 4 D DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 N3 ? ? ? 1_555 B DA 16 N1 ? ? C U 5 D DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 O4 ? ? ? 1_555 B DA 16 N6 ? ? C U 5 D DA 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 6 N1 ? ? ? 1_555 B DC 15 N3 ? ? C G 6 D DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N2 ? ? ? 1_555 B DC 15 O2 ? ? C G 6 D DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 O6 ? ? ? 1_555 B DC 15 N4 ? ? C G 6 D DC 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 7 N3 ? ? ? 1_555 B DG 14 N1 ? ? C C 7 D DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 7 N4 ? ? ? 1_555 B DG 14 O6 ? ? C C 7 D DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 O2 ? ? ? 1_555 B DG 14 N2 ? ? C C 7 D DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 8 N1 ? ? ? 1_555 B DC 13 N3 ? ? C G 8 D DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 8 N2 ? ? ? 1_555 B DC 13 O2 ? ? C G 8 D DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 O6 ? ? ? 1_555 B DC 13 N4 ? ? C G 8 D DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N1 ? ? ? 1_555 B DT 12 N3 ? ? C A 9 D DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 B DT 12 O4 ? ? C A 9 D DT 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N3 ? ? ? 1_555 B DG 11 N1 ? ? C C 10 D DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N4 ? ? ? 1_555 B DG 11 O6 ? ? C C 10 D DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 B DG 11 N2 ? ? C C 10 D DG 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 11 N1 ? ? ? 1_555 B DT 10 N3 ? ? C A 11 D DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 11 N6 ? ? ? 1_555 B DT 10 O4 ? ? C A 11 D DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 N3 ? ? ? 1_555 B DG 9 N1 ? ? C C 12 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 12 N4 ? ? ? 1_555 B DG 9 O6 ? ? C C 12 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 12 O2 ? ? ? 1_555 B DG 9 N2 ? ? C C 12 D DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 N3 ? ? ? 1_555 B DG 8 N1 ? ? C C 13 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N4 ? ? ? 1_555 B DG 8 O6 ? ? C C 13 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 O2 ? ? ? 1_555 B DG 8 N2 ? ? C C 13 D DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 14 N3 ? ? ? 1_555 B DA 7 N1 ? ? C U 14 D DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 14 O4 ? ? ? 1_555 B DA 7 N6 ? ? C U 14 D DA 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 15 N1 ? ? ? 1_555 B DC 6 N3 ? ? C G 15 D DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 15 N2 ? ? ? 1_555 B DC 6 O2 ? ? C G 15 D DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 15 O6 ? ? ? 1_555 B DC 6 N4 ? ? C G 15 D DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 16 N1 ? ? ? 1_555 B DT 5 N3 ? ? C A 16 D DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 16 N6 ? ? ? 1_555 B DT 5 O4 ? ? C A 16 D DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A U 17 N3 ? ? ? 1_555 B DA 4 N1 ? ? C U 17 D DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A U 17 O4 ? ? ? 1_555 B DA 4 N6 ? ? C U 17 D DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A U 18 N3 ? ? ? 1_555 B DA 3 N1 ? ? C U 18 D DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A U 18 O4 ? ? ? 1_555 B DA 3 N6 ? ? C U 18 D DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 19 N3 ? ? ? 1_555 B DG 2 N1 ? ? C C 19 D DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 19 N4 ? ? ? 1_555 B DG 2 O6 ? ? C C 19 D DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 19 O2 ? ? ? 1_555 B DG 2 N2 ? ? C C 19 D DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 20 N4 ? ? ? 1_555 B DG 1 O6 ? ? C C 20 D DG 21 1_555 ? ? ? ? ? ? 'C-DG PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? parallel D 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS C 3 ? MSE C 4 ? HIS A 135 MSE A 136 A 2 PHE C 7 ? SER C 17 ? PHE A 139 SER A 149 A 3 ARG C 25 ? TYR C 31 ? ARG A 157 TYR A 163 A 4 VAL C 40 ? ARG C 43 ? VAL A 172 ARG A 175 B 1 HIS C 3 ? MSE C 4 ? HIS A 135 MSE A 136 B 2 PHE C 7 ? SER C 17 ? PHE A 139 SER A 149 B 3 LYS C 72 ? THR C 77 ? LYS A 204 THR A 209 B 4 ASP C 123 ? HIS C 128 ? ASP A 255 HIS A 260 C 1 HIS D 3 ? MSE D 4 ? HIS B 135 MSE B 136 C 2 PHE D 7 ? SER D 17 ? PHE B 139 SER B 149 C 3 ARG D 25 ? TYR D 31 ? ARG B 157 TYR B 163 C 4 VAL D 40 ? ARG D 43 ? VAL B 172 ARG B 175 D 1 HIS D 3 ? MSE D 4 ? HIS B 135 MSE B 136 D 2 PHE D 7 ? SER D 17 ? PHE B 139 SER B 149 D 3 LYS D 72 ? THR D 77 ? LYS B 204 THR B 209 D 4 ASP D 123 ? HIS D 128 ? ASP B 255 HIS B 260 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MSE C 4 ? N MSE A 136 O PHE C 7 ? O PHE A 139 A 2 3 N TYR C 11 ? N TYR A 143 O TYR C 31 ? O TYR A 163 A 3 4 N ILE C 28 ? N ILE A 160 O ILE C 42 ? O ILE A 174 B 1 2 N MSE C 4 ? N MSE A 136 O PHE C 7 ? O PHE A 139 B 2 3 N VAL C 10 ? N VAL A 142 O TYR C 76 ? O TYR A 208 B 3 4 N LEU C 73 ? N LEU A 205 O GLN C 125 ? O GLN A 257 C 1 2 N MSE D 4 ? N MSE B 136 O PHE D 7 ? O PHE B 139 C 2 3 N TYR D 11 ? N TYR B 143 O TYR D 31 ? O TYR B 163 C 3 4 N ILE D 28 ? N ILE B 160 O ILE D 42 ? O ILE B 174 D 1 2 N MSE D 4 ? N MSE B 136 O PHE D 7 ? O PHE B 139 D 2 3 N VAL D 10 ? N VAL B 142 O TYR D 76 ? O TYR B 208 D 3 4 N LEU D 75 ? N LEU B 207 O MSE D 127 ? O MSE B 259 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 9001 ? 2 'BINDING SITE FOR RESIDUE SO4 A 9001' AC2 Software B SO4 9002 ? 3 'BINDING SITE FOR RESIDUE SO4 B 9002' AC3 Software A EDO 9003 ? 6 'BINDING SITE FOR RESIDUE EDO A 9003' AC4 Software B EDO 9004 ? 6 'BINDING SITE FOR RESIDUE EDO B 9004' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG C 21 ? ARG A 153 . ? 1_555 ? 2 AC1 2 ARG C 22 ? ARG A 154 . ? 1_555 ? 3 AC2 3 ARG D 25 ? ARG B 157 . ? 1_555 ? 4 AC2 3 ARG D 43 ? ARG B 175 . ? 1_555 ? 5 AC2 3 SER D 152 ? SER B 284 . ? 1_555 ? 6 AC3 6 ARG C 47 ? ARG A 179 . ? 1_555 ? 7 AC3 6 ARG C 52 ? ARG A 184 . ? 1_555 ? 8 AC3 6 ILE C 107 ? ILE A 239 . ? 1_555 ? 9 AC3 6 ASP C 111 ? ASP A 243 . ? 1_555 ? 10 AC3 6 HOH K . ? HOH A 9017 . ? 1_555 ? 11 AC3 6 HOH K . ? HOH A 9018 . ? 1_555 ? 12 AC4 6 ARG D 47 ? ARG B 179 . ? 1_555 ? 13 AC4 6 ARG D 52 ? ARG B 184 . ? 1_555 ? 14 AC4 6 ILE D 107 ? ILE B 239 . ? 1_555 ? 15 AC4 6 GLU D 110 ? GLU B 242 . ? 1_555 ? 16 AC4 6 ASP D 111 ? ASP B 243 . ? 1_555 ? 17 AC4 6 HOH L . ? HOH B 9029 . ? 1_555 ? # _atom_sites.entry_id 2QKB _atom_sites.fract_transf_matrix[1][1] 0.009092 _atom_sites.fract_transf_matrix[1][2] 0.005249 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010498 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014869 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G C . n A 1 2 G 2 2 2 G G C . n A 1 3 A 3 3 3 A A C . n A 1 4 G 4 4 4 G G C . n A 1 5 U 5 5 5 U U C . n A 1 6 G 6 6 6 G G C . n A 1 7 C 7 7 7 C C C . n A 1 8 G 8 8 8 G G C . n A 1 9 A 9 9 9 A A C . n A 1 10 C 10 10 10 C C C . n A 1 11 A 11 11 11 A A C . n A 1 12 C 12 12 12 C C C . n A 1 13 C 13 13 13 C C C . n A 1 14 U 14 14 14 U U C . n A 1 15 G 15 15 15 G G C . n A 1 16 A 16 16 16 A A C . n A 1 17 U 17 17 17 U U C . n A 1 18 U 18 18 18 U U C . n A 1 19 C 19 19 19 C C C . n A 1 20 C 20 20 20 C C C . n B 2 1 DG 1 21 21 DG DG D . n B 2 2 DG 2 22 22 DG DG D . n B 2 3 DA 3 23 23 DA DA D . n B 2 4 DA 4 24 24 DA DA D . n B 2 5 DT 5 25 25 DT DT D . n B 2 6 DC 6 26 26 DC DC D . n B 2 7 DA 7 27 27 DA DA D . n B 2 8 DG 8 28 28 DG DG D . n B 2 9 DG 9 29 29 DG DG D . n B 2 10 DT 10 30 30 DT DT D . n B 2 11 DG 11 31 31 DG DG D . n B 2 12 DT 12 32 32 DT DT D . n B 2 13 DC 13 33 33 DC DC D . n B 2 14 DG 14 34 34 DG DG D . n B 2 15 DC 15 35 35 DC DC D . n B 2 16 DA 16 36 36 DA DA D . n B 2 17 DC 17 37 37 DC DC D . n B 2 18 DT 18 38 38 DT DT D . n B 2 19 DC 19 39 39 DC DC D . n B 2 20 DT 20 40 40 DT DT D . n C 3 1 GLY 1 133 133 GLY GLY A . n C 3 2 SER 2 134 134 SER SER A . n C 3 3 HIS 3 135 135 HIS HIS A . n C 3 4 MSE 4 136 136 MSE MSE A . n C 3 5 GLY 5 137 137 GLY GLY A . n C 3 6 ASP 6 138 138 ASP ASP A . n C 3 7 PHE 7 139 139 PHE PHE A . n C 3 8 VAL 8 140 140 VAL VAL A . n C 3 9 VAL 9 141 141 VAL VAL A . n C 3 10 VAL 10 142 142 VAL VAL A . n C 3 11 TYR 11 143 143 TYR TYR A . n C 3 12 THR 12 144 144 THR THR A . n C 3 13 ASP 13 145 145 ASP ASP A . n C 3 14 GLY 14 146 146 GLY GLY A . n C 3 15 CYS 15 147 147 CYS CYS A . n C 3 16 CYS 16 148 148 CYS CYS A . n C 3 17 SER 17 149 149 SER SER A . n C 3 18 SER 18 150 150 SER SER A . n C 3 19 ASN 19 151 151 ASN ASN A . n C 3 20 GLY 20 152 152 GLY GLY A . n C 3 21 ARG 21 153 153 ARG ARG A . n C 3 22 ARG 22 154 154 ARG ARG A . n C 3 23 ARG 23 155 155 ARG ARG A . n C 3 24 PRO 24 156 156 PRO PRO A . n C 3 25 ARG 25 157 157 ARG ARG A . n C 3 26 ALA 26 158 158 ALA ALA A . n C 3 27 GLY 27 159 159 GLY GLY A . n C 3 28 ILE 28 160 160 ILE ILE A . n C 3 29 GLY 29 161 161 GLY GLY A . n C 3 30 VAL 30 162 162 VAL VAL A . n C 3 31 TYR 31 163 163 TYR TYR A . n C 3 32 TRP 32 164 164 TRP TRP A . n C 3 33 GLY 33 165 165 GLY GLY A . n C 3 34 PRO 34 166 166 PRO PRO A . n C 3 35 GLY 35 167 167 GLY GLY A . n C 3 36 HIS 36 168 168 HIS HIS A . n C 3 37 PRO 37 169 169 PRO PRO A . n C 3 38 LEU 38 170 170 LEU LEU A . n C 3 39 ASN 39 171 171 ASN ASN A . n C 3 40 VAL 40 172 172 VAL VAL A . n C 3 41 GLY 41 173 173 GLY GLY A . n C 3 42 ILE 42 174 174 ILE ILE A . n C 3 43 ARG 43 175 175 ARG ARG A . n C 3 44 LEU 44 176 176 LEU LEU A . n C 3 45 PRO 45 177 177 PRO PRO A . n C 3 46 GLY 46 178 178 GLY GLY A . n C 3 47 ARG 47 179 179 ARG ARG A . n C 3 48 GLN 48 180 180 GLN GLN A . n C 3 49 THR 49 181 181 THR THR A . n C 3 50 ASN 50 182 182 ASN ASN A . n C 3 51 GLN 51 183 183 GLN GLN A . n C 3 52 ARG 52 184 184 ARG ARG A . n C 3 53 ALA 53 185 185 ALA ALA A . n C 3 54 GLU 54 186 186 GLU GLU A . n C 3 55 ILE 55 187 187 ILE ILE A . n C 3 56 HIS 56 188 188 HIS HIS A . n C 3 57 ALA 57 189 189 ALA ALA A . n C 3 58 ALA 58 190 190 ALA ALA A . n C 3 59 CYS 59 191 191 CYS CYS A . n C 3 60 LYS 60 192 192 LYS LYS A . n C 3 61 ALA 61 193 193 ALA ALA A . n C 3 62 ILE 62 194 194 ILE ILE A . n C 3 63 GLU 63 195 195 GLU GLU A . n C 3 64 GLN 64 196 196 GLN GLN A . n C 3 65 ALA 65 197 197 ALA ALA A . n C 3 66 LYS 66 198 198 LYS LYS A . n C 3 67 THR 67 199 199 THR THR A . n C 3 68 GLN 68 200 200 GLN GLN A . n C 3 69 ASN 69 201 201 ASN ASN A . n C 3 70 ILE 70 202 202 ILE ILE A . n C 3 71 ASN 71 203 203 ASN ASN A . n C 3 72 LYS 72 204 204 LYS LYS A . n C 3 73 LEU 73 205 205 LEU LEU A . n C 3 74 VAL 74 206 206 VAL VAL A . n C 3 75 LEU 75 207 207 LEU LEU A . n C 3 76 TYR 76 208 208 TYR TYR A . n C 3 77 THR 77 209 209 THR THR A . n C 3 78 ASN 78 210 210 ASN ASN A . n C 3 79 SER 79 211 211 SER SER A . n C 3 80 MSE 80 212 212 MSE MSE A . n C 3 81 PHE 81 213 213 PHE PHE A . n C 3 82 THR 82 214 214 THR THR A . n C 3 83 ILE 83 215 215 ILE ILE A . n C 3 84 ASN 84 216 216 ASN ASN A . n C 3 85 GLY 85 217 217 GLY GLY A . n C 3 86 ILE 86 218 218 ILE ILE A . n C 3 87 THR 87 219 219 THR THR A . n C 3 88 ASN 88 220 220 ASN ASN A . n C 3 89 TRP 89 221 221 TRP TRP A . n C 3 90 VAL 90 222 222 VAL VAL A . n C 3 91 GLN 91 223 223 GLN GLN A . n C 3 92 GLY 92 224 224 GLY GLY A . n C 3 93 TRP 93 225 225 TRP TRP A . n C 3 94 LYS 94 226 226 LYS LYS A . n C 3 95 LYS 95 227 227 LYS LYS A . n C 3 96 ASN 96 228 228 ASN ASN A . n C 3 97 GLY 97 229 229 GLY GLY A . n C 3 98 TRP 98 230 230 TRP TRP A . n C 3 99 LYS 99 231 231 LYS LYS A . n C 3 100 THR 100 232 232 THR THR A . n C 3 101 SER 101 233 233 SER SER A . n C 3 102 ALA 102 234 234 ALA ALA A . n C 3 103 GLY 103 235 235 GLY GLY A . n C 3 104 LYS 104 236 236 LYS LYS A . n C 3 105 GLU 105 237 237 GLU GLU A . n C 3 106 VAL 106 238 238 VAL VAL A . n C 3 107 ILE 107 239 239 ILE ILE A . n C 3 108 ASN 108 240 240 ASN ASN A . n C 3 109 LYS 109 241 241 LYS LYS A . n C 3 110 GLU 110 242 242 GLU GLU A . n C 3 111 ASP 111 243 243 ASP ASP A . n C 3 112 PHE 112 244 244 PHE PHE A . n C 3 113 VAL 113 245 245 VAL VAL A . n C 3 114 ALA 114 246 246 ALA ALA A . n C 3 115 LEU 115 247 247 LEU LEU A . n C 3 116 GLU 116 248 248 GLU GLU A . n C 3 117 ARG 117 249 249 ARG ARG A . n C 3 118 LEU 118 250 250 LEU LEU A . n C 3 119 THR 119 251 251 THR THR A . n C 3 120 GLN 120 252 252 GLN GLN A . n C 3 121 GLY 121 253 253 GLY GLY A . n C 3 122 MSE 122 254 254 MSE MSE A . n C 3 123 ASP 123 255 255 ASP ASP A . n C 3 124 ILE 124 256 256 ILE ILE A . n C 3 125 GLN 125 257 257 GLN GLN A . n C 3 126 TRP 126 258 258 TRP TRP A . n C 3 127 MSE 127 259 259 MSE MSE A . n C 3 128 HIS 128 260 260 HIS HIS A . n C 3 129 VAL 129 261 261 VAL VAL A . n C 3 130 PRO 130 262 262 PRO PRO A . n C 3 131 GLY 131 263 263 GLY GLY A . n C 3 132 HIS 132 264 264 HIS HIS A . n C 3 133 SER 133 265 265 SER SER A . n C 3 134 GLY 134 266 266 GLY GLY A . n C 3 135 PHE 135 267 267 PHE PHE A . n C 3 136 ILE 136 268 268 ILE ILE A . n C 3 137 GLY 137 269 269 GLY GLY A . n C 3 138 ASN 138 270 270 ASN ASN A . n C 3 139 GLU 139 271 271 GLU GLU A . n C 3 140 GLU 140 272 272 GLU GLU A . n C 3 141 ALA 141 273 273 ALA ALA A . n C 3 142 ASP 142 274 274 ASP ASP A . n C 3 143 ARG 143 275 275 ARG ARG A . n C 3 144 LEU 144 276 276 LEU LEU A . n C 3 145 ALA 145 277 277 ALA ALA A . n C 3 146 ARG 146 278 278 ARG ARG A . n C 3 147 GLU 147 279 279 GLU GLU A . n C 3 148 GLY 148 280 280 GLY GLY A . n C 3 149 ALA 149 281 281 ALA ALA A . n C 3 150 LYS 150 282 282 LYS LYS A . n C 3 151 GLN 151 283 283 GLN GLN A . n C 3 152 SER 152 284 284 SER SER A . n C 3 153 GLU 153 285 ? ? ? A . n C 3 154 ASP 154 286 ? ? ? A . n D 3 1 GLY 1 133 ? ? ? B . n D 3 2 SER 2 134 134 SER SER B . n D 3 3 HIS 3 135 135 HIS HIS B . n D 3 4 MSE 4 136 136 MSE MSE B . n D 3 5 GLY 5 137 137 GLY GLY B . n D 3 6 ASP 6 138 138 ASP ASP B . n D 3 7 PHE 7 139 139 PHE PHE B . n D 3 8 VAL 8 140 140 VAL VAL B . n D 3 9 VAL 9 141 141 VAL VAL B . n D 3 10 VAL 10 142 142 VAL VAL B . n D 3 11 TYR 11 143 143 TYR TYR B . n D 3 12 THR 12 144 144 THR THR B . n D 3 13 ASP 13 145 145 ASP ASP B . n D 3 14 GLY 14 146 146 GLY GLY B . n D 3 15 CYS 15 147 147 CYS CYS B . n D 3 16 CYS 16 148 148 CYS CYS B . n D 3 17 SER 17 149 149 SER SER B . n D 3 18 SER 18 150 150 SER SER B . n D 3 19 ASN 19 151 151 ASN ASN B . n D 3 20 GLY 20 152 ? ? ? B . n D 3 21 ARG 21 153 153 ARG ARG B . n D 3 22 ARG 22 154 154 ARG ARG B . n D 3 23 ARG 23 155 155 ARG ARG B . n D 3 24 PRO 24 156 156 PRO PRO B . n D 3 25 ARG 25 157 157 ARG ARG B . n D 3 26 ALA 26 158 158 ALA ALA B . n D 3 27 GLY 27 159 159 GLY GLY B . n D 3 28 ILE 28 160 160 ILE ILE B . n D 3 29 GLY 29 161 161 GLY GLY B . n D 3 30 VAL 30 162 162 VAL VAL B . n D 3 31 TYR 31 163 163 TYR TYR B . n D 3 32 TRP 32 164 164 TRP TRP B . n D 3 33 GLY 33 165 165 GLY GLY B . n D 3 34 PRO 34 166 166 PRO PRO B . n D 3 35 GLY 35 167 167 GLY GLY B . n D 3 36 HIS 36 168 168 HIS HIS B . n D 3 37 PRO 37 169 169 PRO PRO B . n D 3 38 LEU 38 170 170 LEU LEU B . n D 3 39 ASN 39 171 171 ASN ASN B . n D 3 40 VAL 40 172 172 VAL VAL B . n D 3 41 GLY 41 173 173 GLY GLY B . n D 3 42 ILE 42 174 174 ILE ILE B . n D 3 43 ARG 43 175 175 ARG ARG B . n D 3 44 LEU 44 176 176 LEU LEU B . n D 3 45 PRO 45 177 177 PRO PRO B . n D 3 46 GLY 46 178 178 GLY GLY B . n D 3 47 ARG 47 179 179 ARG ARG B . n D 3 48 GLN 48 180 180 GLN GLN B . n D 3 49 THR 49 181 181 THR THR B . n D 3 50 ASN 50 182 182 ASN ASN B . n D 3 51 GLN 51 183 183 GLN GLN B . n D 3 52 ARG 52 184 184 ARG ARG B . n D 3 53 ALA 53 185 185 ALA ALA B . n D 3 54 GLU 54 186 186 GLU GLU B . n D 3 55 ILE 55 187 187 ILE ILE B . n D 3 56 HIS 56 188 188 HIS HIS B . n D 3 57 ALA 57 189 189 ALA ALA B . n D 3 58 ALA 58 190 190 ALA ALA B . n D 3 59 CYS 59 191 191 CYS CYS B . n D 3 60 LYS 60 192 192 LYS LYS B . n D 3 61 ALA 61 193 193 ALA ALA B . n D 3 62 ILE 62 194 194 ILE ILE B . n D 3 63 GLU 63 195 195 GLU GLU B . n D 3 64 GLN 64 196 196 GLN GLN B . n D 3 65 ALA 65 197 197 ALA ALA B . n D 3 66 LYS 66 198 198 LYS LYS B . n D 3 67 THR 67 199 199 THR THR B . n D 3 68 GLN 68 200 200 GLN GLN B . n D 3 69 ASN 69 201 201 ASN ASN B . n D 3 70 ILE 70 202 202 ILE ILE B . n D 3 71 ASN 71 203 203 ASN ASN B . n D 3 72 LYS 72 204 204 LYS LYS B . n D 3 73 LEU 73 205 205 LEU LEU B . n D 3 74 VAL 74 206 206 VAL VAL B . n D 3 75 LEU 75 207 207 LEU LEU B . n D 3 76 TYR 76 208 208 TYR TYR B . n D 3 77 THR 77 209 209 THR THR B . n D 3 78 ASN 78 210 210 ASN ASN B . n D 3 79 SER 79 211 211 SER SER B . n D 3 80 MSE 80 212 212 MSE MSE B . n D 3 81 PHE 81 213 213 PHE PHE B . n D 3 82 THR 82 214 214 THR THR B . n D 3 83 ILE 83 215 215 ILE ILE B . n D 3 84 ASN 84 216 216 ASN ASN B . n D 3 85 GLY 85 217 217 GLY GLY B . n D 3 86 ILE 86 218 218 ILE ILE B . n D 3 87 THR 87 219 219 THR THR B . n D 3 88 ASN 88 220 220 ASN ASN B . n D 3 89 TRP 89 221 221 TRP TRP B . n D 3 90 VAL 90 222 222 VAL VAL B . n D 3 91 GLN 91 223 223 GLN GLN B . n D 3 92 GLY 92 224 224 GLY GLY B . n D 3 93 TRP 93 225 225 TRP TRP B . n D 3 94 LYS 94 226 226 LYS LYS B . n D 3 95 LYS 95 227 227 LYS LYS B . n D 3 96 ASN 96 228 228 ASN ASN B . n D 3 97 GLY 97 229 229 GLY GLY B . n D 3 98 TRP 98 230 230 TRP TRP B . n D 3 99 LYS 99 231 231 LYS LYS B . n D 3 100 THR 100 232 232 THR THR B . n D 3 101 SER 101 233 233 SER SER B . n D 3 102 ALA 102 234 234 ALA ALA B . n D 3 103 GLY 103 235 235 GLY GLY B . n D 3 104 LYS 104 236 236 LYS LYS B . n D 3 105 GLU 105 237 237 GLU GLU B . n D 3 106 VAL 106 238 238 VAL VAL B . n D 3 107 ILE 107 239 239 ILE ILE B . n D 3 108 ASN 108 240 240 ASN ASN B . n D 3 109 LYS 109 241 241 LYS LYS B . n D 3 110 GLU 110 242 242 GLU GLU B . n D 3 111 ASP 111 243 243 ASP ASP B . n D 3 112 PHE 112 244 244 PHE PHE B . n D 3 113 VAL 113 245 245 VAL VAL B . n D 3 114 ALA 114 246 246 ALA ALA B . n D 3 115 LEU 115 247 247 LEU LEU B . n D 3 116 GLU 116 248 248 GLU GLU B . n D 3 117 ARG 117 249 249 ARG ARG B . n D 3 118 LEU 118 250 250 LEU LEU B . n D 3 119 THR 119 251 251 THR THR B . n D 3 120 GLN 120 252 252 GLN GLN B . n D 3 121 GLY 121 253 253 GLY GLY B . n D 3 122 MSE 122 254 254 MSE MSE B . n D 3 123 ASP 123 255 255 ASP ASP B . n D 3 124 ILE 124 256 256 ILE ILE B . n D 3 125 GLN 125 257 257 GLN GLN B . n D 3 126 TRP 126 258 258 TRP TRP B . n D 3 127 MSE 127 259 259 MSE MSE B . n D 3 128 HIS 128 260 260 HIS HIS B . n D 3 129 VAL 129 261 261 VAL VAL B . n D 3 130 PRO 130 262 262 PRO PRO B . n D 3 131 GLY 131 263 263 GLY GLY B . n D 3 132 HIS 132 264 264 HIS HIS B . n D 3 133 SER 133 265 265 SER SER B . n D 3 134 GLY 134 266 266 GLY GLY B . n D 3 135 PHE 135 267 267 PHE PHE B . n D 3 136 ILE 136 268 268 ILE ILE B . n D 3 137 GLY 137 269 269 GLY GLY B . n D 3 138 ASN 138 270 270 ASN ASN B . n D 3 139 GLU 139 271 271 GLU GLU B . n D 3 140 GLU 140 272 272 GLU GLU B . n D 3 141 ALA 141 273 273 ALA ALA B . n D 3 142 ASP 142 274 274 ASP ASP B . n D 3 143 ARG 143 275 275 ARG ARG B . n D 3 144 LEU 144 276 276 LEU LEU B . n D 3 145 ALA 145 277 277 ALA ALA B . n D 3 146 ARG 146 278 278 ARG ARG B . n D 3 147 GLU 147 279 279 GLU GLU B . n D 3 148 GLY 148 280 280 GLY GLY B . n D 3 149 ALA 149 281 281 ALA ALA B . n D 3 150 LYS 150 282 282 LYS LYS B . n D 3 151 GLN 151 283 283 GLN GLN B . n D 3 152 SER 152 284 284 SER SER B . n D 3 153 GLU 153 285 ? ? ? B . n D 3 154 ASP 154 286 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 SO4 1 9001 9001 SO4 SO4 A . F 5 EDO 1 9003 9003 EDO EDO A . G 4 SO4 1 9002 9002 SO4 SO4 B . H 5 EDO 1 9004 9004 EDO EDO B . I 6 HOH 1 21 21 HOH HOH C . I 6 HOH 2 22 22 HOH HOH C . I 6 HOH 3 23 23 HOH HOH C . I 6 HOH 4 24 24 HOH HOH C . I 6 HOH 5 25 25 HOH HOH C . J 6 HOH 1 41 41 HOH HOH D . J 6 HOH 2 42 42 HOH HOH D . J 6 HOH 3 43 43 HOH HOH D . J 6 HOH 4 44 44 HOH HOH D . J 6 HOH 5 45 45 HOH HOH D . J 6 HOH 6 46 46 HOH HOH D . J 6 HOH 7 47 47 HOH HOH D . J 6 HOH 8 48 48 HOH HOH D . K 6 HOH 1 9004 2 HOH HOH A . K 6 HOH 2 9005 7 HOH HOH A . K 6 HOH 3 9006 12 HOH HOH A . K 6 HOH 4 9007 32 HOH HOH A . K 6 HOH 5 9008 35 HOH HOH A . K 6 HOH 6 9009 36 HOH HOH A . K 6 HOH 7 9010 39 HOH HOH A . K 6 HOH 8 9011 40 HOH HOH A . K 6 HOH 9 9012 41 HOH HOH A . K 6 HOH 10 9013 42 HOH HOH A . K 6 HOH 11 9014 45 HOH HOH A . K 6 HOH 12 9015 46 HOH HOH A . K 6 HOH 13 9016 47 HOH HOH A . K 6 HOH 14 9017 51 HOH HOH A . K 6 HOH 15 9018 52 HOH HOH A . K 6 HOH 16 9019 55 HOH HOH A . L 6 HOH 1 9005 1 HOH HOH B . L 6 HOH 2 9006 3 HOH HOH B . L 6 HOH 3 9007 4 HOH HOH B . L 6 HOH 4 9008 5 HOH HOH B . L 6 HOH 5 9009 6 HOH HOH B . L 6 HOH 6 9010 11 HOH HOH B . L 6 HOH 7 9011 13 HOH HOH B . L 6 HOH 8 9012 14 HOH HOH B . L 6 HOH 9 9013 16 HOH HOH B . L 6 HOH 10 9014 18 HOH HOH B . L 6 HOH 11 9015 19 HOH HOH B . L 6 HOH 12 9016 20 HOH HOH B . L 6 HOH 13 9017 21 HOH HOH B . L 6 HOH 14 9018 22 HOH HOH B . L 6 HOH 15 9019 24 HOH HOH B . L 6 HOH 16 9020 25 HOH HOH B . L 6 HOH 17 9021 27 HOH HOH B . L 6 HOH 18 9022 28 HOH HOH B . L 6 HOH 19 9023 29 HOH HOH B . L 6 HOH 20 9024 33 HOH HOH B . L 6 HOH 21 9025 38 HOH HOH B . L 6 HOH 22 9026 43 HOH HOH B . L 6 HOH 23 9027 48 HOH HOH B . L 6 HOH 24 9028 49 HOH HOH B . L 6 HOH 25 9029 53 HOH HOH B . L 6 HOH 26 9030 54 HOH HOH B . L 6 HOH 27 9031 56 HOH HOH B . L 6 HOH 28 9032 57 HOH HOH B . L 6 HOH 29 9033 58 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C MSE 4 A MSE 136 ? MET SELENOMETHIONINE 2 C MSE 80 A MSE 212 ? MET SELENOMETHIONINE 3 C MSE 122 A MSE 254 ? MET SELENOMETHIONINE 4 C MSE 127 A MSE 259 ? MET SELENOMETHIONINE 5 D MSE 4 B MSE 136 ? MET SELENOMETHIONINE 6 D MSE 80 B MSE 212 ? MET SELENOMETHIONINE 7 D MSE 122 B MSE 254 ? MET SELENOMETHIONINE 8 D MSE 127 B MSE 259 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-13 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-07-28 4 'Structure model' 1 3 2021-10-20 5 'Structure model' 1 4 2023-08-30 6 'Structure model' 1 5 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Database references' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' refine 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_ref_seq_dif 4 3 'Structure model' struct_site 5 4 'Structure model' database_2 6 4 'Structure model' struct_ref_seq_dif 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_initial_refinement_model 10 6 'Structure model' chem_comp_atom 11 6 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_refine.ls_percent_reflns_obs' 2 3 'Structure model' '_refine.pdbx_ls_cross_valid_method' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 8 4 'Structure model' '_database_2.pdbx_DOI' 9 4 'Structure model' '_database_2.pdbx_database_accession' 10 4 'Structure model' '_struct_ref_seq_dif.details' 11 6 'Structure model' '_chem_comp_atom.atom_id' 12 6 'Structure model' '_chem_comp_bond.atom_id_2' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 P _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.523 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.084 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 VAL _pdbx_validate_rmsd_angle.auth_seq_id_1 261 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 262 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 262 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 129.61 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 10.31 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 148 ? ? -168.16 107.25 2 1 ARG A 153 ? ? -111.20 -154.76 3 1 ASN A 220 ? ? -131.90 -85.93 4 1 LYS A 227 ? ? -108.00 48.70 5 1 ASN A 228 ? ? -179.27 22.02 6 1 ALA A 234 ? ? -109.44 43.34 7 1 SER A 265 ? ? -142.15 37.35 8 1 GLN A 283 ? ? -124.84 -165.62 9 1 MSE B 136 ? ? -110.36 75.72 10 1 CYS B 148 ? ? -168.72 109.68 11 1 SER B 150 ? ? 93.79 -15.06 12 1 ARG B 154 ? ? -97.62 -72.57 13 1 PRO B 156 ? ? -22.72 105.67 14 1 ASN B 220 ? ? -156.71 -9.57 15 1 PRO B 262 ? ? -56.41 174.29 16 1 PHE B 267 ? ? 57.85 76.95 17 1 GLN B 283 ? ? 178.15 26.08 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A C 11 ? ? 0.081 'SIDE CHAIN' 2 1 C C 13 ? ? 0.084 'SIDE CHAIN' 3 1 U C 18 ? ? 0.082 'SIDE CHAIN' 4 1 DT D 25 ? ? 0.064 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 C DG 1 ? "O5'" ? A DG 1 "O5'" 2 1 Y 1 C DG 1 ? "C5'" ? A DG 1 "C5'" 3 1 Y 1 C DG 1 ? "C4'" ? A DG 1 "C4'" 4 1 Y 1 C DG 1 ? "O4'" ? A DG 1 "O4'" 5 1 Y 1 C DG 1 ? "C3'" ? A DG 1 "C3'" 6 1 Y 1 C DG 1 ? "C2'" ? A DG 1 "C2'" 7 1 Y 1 C DG 1 ? "C1'" ? A DG 1 "C1'" 8 1 Y 1 C DG 1 ? N9 ? A DG 1 N9 9 1 Y 1 C DG 1 ? C8 ? A DG 1 C8 10 1 Y 1 C DG 1 ? N7 ? A DG 1 N7 11 1 Y 1 C DG 1 ? C5 ? A DG 1 C5 12 1 Y 1 C DG 1 ? C6 ? A DG 1 C6 13 1 Y 1 C DG 1 ? O6 ? A DG 1 O6 14 1 Y 1 C DG 1 ? N1 ? A DG 1 N1 15 1 Y 1 C DG 1 ? C2 ? A DG 1 C2 16 1 Y 1 C DG 1 ? N2 ? A DG 1 N2 17 1 Y 1 C DG 1 ? N3 ? A DG 1 N3 18 1 Y 1 C DG 1 ? C4 ? A DG 1 C4 19 1 Y 1 A SER 284 ? OG ? C SER 152 OG 20 1 Y 1 B SER 134 ? OG ? D SER 2 OG # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 285 ? C GLU 153 2 1 Y 1 A ASP 286 ? C ASP 154 3 1 Y 1 B GLY 133 ? D GLY 1 4 1 Y 1 B GLY 152 ? D GLY 20 5 1 Y 1 B GLU 285 ? D GLU 153 6 1 Y 1 B ASP 286 ? D ASP 154 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CYS N N N N 146 CYS CA C N R 147 CYS C C N N 148 CYS O O N N 149 CYS CB C N N 150 CYS SG S N N 151 CYS OXT O N N 152 CYS H H N N 153 CYS H2 H N N 154 CYS HA H N N 155 CYS HB2 H N N 156 CYS HB3 H N N 157 CYS HG H N N 158 CYS HXT H N N 159 DA OP3 O N N 160 DA P P N N 161 DA OP1 O N N 162 DA OP2 O N N 163 DA "O5'" O N N 164 DA "C5'" C N N 165 DA "C4'" C N R 166 DA "O4'" O N N 167 DA "C3'" C N S 168 DA "O3'" O N N 169 DA "C2'" C N N 170 DA "C1'" C N R 171 DA N9 N Y N 172 DA C8 C Y N 173 DA N7 N Y N 174 DA C5 C Y N 175 DA C6 C Y N 176 DA N6 N N N 177 DA N1 N Y N 178 DA C2 C Y N 179 DA N3 N Y N 180 DA C4 C Y N 181 DA HOP3 H N N 182 DA HOP2 H N N 183 DA "H5'" H N N 184 DA "H5''" H N N 185 DA "H4'" H N N 186 DA "H3'" H N N 187 DA "HO3'" H N N 188 DA "H2'" H N N 189 DA "H2''" H N N 190 DA "H1'" H N N 191 DA H8 H N N 192 DA H61 H N N 193 DA H62 H N N 194 DA H2 H N N 195 DC OP3 O N N 196 DC P P N N 197 DC OP1 O N N 198 DC OP2 O N N 199 DC "O5'" O N N 200 DC "C5'" C N N 201 DC "C4'" C N R 202 DC "O4'" O N N 203 DC "C3'" C N S 204 DC "O3'" O N N 205 DC "C2'" C N N 206 DC "C1'" C N R 207 DC N1 N N N 208 DC C2 C N N 209 DC O2 O N N 210 DC N3 N N N 211 DC C4 C N N 212 DC N4 N N N 213 DC C5 C N N 214 DC C6 C N N 215 DC HOP3 H N N 216 DC HOP2 H N N 217 DC "H5'" H N N 218 DC "H5''" H N N 219 DC "H4'" H N N 220 DC "H3'" H N N 221 DC "HO3'" H N N 222 DC "H2'" H N N 223 DC "H2''" H N N 224 DC "H1'" H N N 225 DC H41 H N N 226 DC H42 H N N 227 DC H5 H N N 228 DC H6 H N N 229 DG OP3 O N N 230 DG P P N N 231 DG OP1 O N N 232 DG OP2 O N N 233 DG "O5'" O N N 234 DG "C5'" C N N 235 DG "C4'" C N R 236 DG "O4'" O N N 237 DG "C3'" C N S 238 DG "O3'" O N N 239 DG "C2'" C N N 240 DG "C1'" C N R 241 DG N9 N Y N 242 DG C8 C Y N 243 DG N7 N Y N 244 DG C5 C Y N 245 DG C6 C N N 246 DG O6 O N N 247 DG N1 N N N 248 DG C2 C N N 249 DG N2 N N N 250 DG N3 N N N 251 DG C4 C Y N 252 DG HOP3 H N N 253 DG HOP2 H N N 254 DG "H5'" H N N 255 DG "H5''" H N N 256 DG "H4'" H N N 257 DG "H3'" H N N 258 DG "HO3'" H N N 259 DG "H2'" H N N 260 DG "H2''" H N N 261 DG "H1'" H N N 262 DG H8 H N N 263 DG H1 H N N 264 DG H21 H N N 265 DG H22 H N N 266 DT OP3 O N N 267 DT P P N N 268 DT OP1 O N N 269 DT OP2 O N N 270 DT "O5'" O N N 271 DT "C5'" C N N 272 DT "C4'" C N R 273 DT "O4'" O N N 274 DT "C3'" C N S 275 DT "O3'" O N N 276 DT "C2'" C N N 277 DT "C1'" C N R 278 DT N1 N N N 279 DT C2 C N N 280 DT O2 O N N 281 DT N3 N N N 282 DT C4 C N N 283 DT O4 O N N 284 DT C5 C N N 285 DT C7 C N N 286 DT C6 C N N 287 DT HOP3 H N N 288 DT HOP2 H N N 289 DT "H5'" H N N 290 DT "H5''" H N N 291 DT "H4'" H N N 292 DT "H3'" H N N 293 DT "HO3'" H N N 294 DT "H2'" H N N 295 DT "H2''" H N N 296 DT "H1'" H N N 297 DT H3 H N N 298 DT H71 H N N 299 DT H72 H N N 300 DT H73 H N N 301 DT H6 H N N 302 EDO C1 C N N 303 EDO O1 O N N 304 EDO C2 C N N 305 EDO O2 O N N 306 EDO H11 H N N 307 EDO H12 H N N 308 EDO HO1 H N N 309 EDO H21 H N N 310 EDO H22 H N N 311 EDO HO2 H N N 312 G OP3 O N N 313 G P P N N 314 G OP1 O N N 315 G OP2 O N N 316 G "O5'" O N N 317 G "C5'" C N N 318 G "C4'" C N R 319 G "O4'" O N N 320 G "C3'" C N S 321 G "O3'" O N N 322 G "C2'" C N R 323 G "O2'" O N N 324 G "C1'" C N R 325 G N9 N Y N 326 G C8 C Y N 327 G N7 N Y N 328 G C5 C Y N 329 G C6 C N N 330 G O6 O N N 331 G N1 N N N 332 G C2 C N N 333 G N2 N N N 334 G N3 N N N 335 G C4 C Y N 336 G HOP3 H N N 337 G HOP2 H N N 338 G "H5'" H N N 339 G "H5''" H N N 340 G "H4'" H N N 341 G "H3'" H N N 342 G "HO3'" H N N 343 G "H2'" H N N 344 G "HO2'" H N N 345 G "H1'" H N N 346 G H8 H N N 347 G H1 H N N 348 G H21 H N N 349 G H22 H N N 350 GLN N N N N 351 GLN CA C N S 352 GLN C C N N 353 GLN O O N N 354 GLN CB C N N 355 GLN CG C N N 356 GLN CD C N N 357 GLN OE1 O N N 358 GLN NE2 N N N 359 GLN OXT O N N 360 GLN H H N N 361 GLN H2 H N N 362 GLN HA H N N 363 GLN HB2 H N N 364 GLN HB3 H N N 365 GLN HG2 H N N 366 GLN HG3 H N N 367 GLN HE21 H N N 368 GLN HE22 H N N 369 GLN HXT H N N 370 GLU N N N N 371 GLU CA C N S 372 GLU C C N N 373 GLU O O N N 374 GLU CB C N N 375 GLU CG C N N 376 GLU CD C N N 377 GLU OE1 O N N 378 GLU OE2 O N N 379 GLU OXT O N N 380 GLU H H N N 381 GLU H2 H N N 382 GLU HA H N N 383 GLU HB2 H N N 384 GLU HB3 H N N 385 GLU HG2 H N N 386 GLU HG3 H N N 387 GLU HE2 H N N 388 GLU HXT H N N 389 GLY N N N N 390 GLY CA C N N 391 GLY C C N N 392 GLY O O N N 393 GLY OXT O N N 394 GLY H H N N 395 GLY H2 H N N 396 GLY HA2 H N N 397 GLY HA3 H N N 398 GLY HXT H N N 399 HIS N N N N 400 HIS CA C N S 401 HIS C C N N 402 HIS O O N N 403 HIS CB C N N 404 HIS CG C Y N 405 HIS ND1 N Y N 406 HIS CD2 C Y N 407 HIS CE1 C Y N 408 HIS NE2 N Y N 409 HIS OXT O N N 410 HIS H H N N 411 HIS H2 H N N 412 HIS HA H N N 413 HIS HB2 H N N 414 HIS HB3 H N N 415 HIS HD1 H N N 416 HIS HD2 H N N 417 HIS HE1 H N N 418 HIS HE2 H N N 419 HIS HXT H N N 420 HOH O O N N 421 HOH H1 H N N 422 HOH H2 H N N 423 ILE N N N N 424 ILE CA C N S 425 ILE C C N N 426 ILE O O N N 427 ILE CB C N S 428 ILE CG1 C N N 429 ILE CG2 C N N 430 ILE CD1 C N N 431 ILE OXT O N N 432 ILE H H N N 433 ILE H2 H N N 434 ILE HA H N N 435 ILE HB H N N 436 ILE HG12 H N N 437 ILE HG13 H N N 438 ILE HG21 H N N 439 ILE HG22 H N N 440 ILE HG23 H N N 441 ILE HD11 H N N 442 ILE HD12 H N N 443 ILE HD13 H N N 444 ILE HXT H N N 445 LEU N N N N 446 LEU CA C N S 447 LEU C C N N 448 LEU O O N N 449 LEU CB C N N 450 LEU CG C N N 451 LEU CD1 C N N 452 LEU CD2 C N N 453 LEU OXT O N N 454 LEU H H N N 455 LEU H2 H N N 456 LEU HA H N N 457 LEU HB2 H N N 458 LEU HB3 H N N 459 LEU HG H N N 460 LEU HD11 H N N 461 LEU HD12 H N N 462 LEU HD13 H N N 463 LEU HD21 H N N 464 LEU HD22 H N N 465 LEU HD23 H N N 466 LEU HXT H N N 467 LYS N N N N 468 LYS CA C N S 469 LYS C C N N 470 LYS O O N N 471 LYS CB C N N 472 LYS CG C N N 473 LYS CD C N N 474 LYS CE C N N 475 LYS NZ N N N 476 LYS OXT O N N 477 LYS H H N N 478 LYS H2 H N N 479 LYS HA H N N 480 LYS HB2 H N N 481 LYS HB3 H N N 482 LYS HG2 H N N 483 LYS HG3 H N N 484 LYS HD2 H N N 485 LYS HD3 H N N 486 LYS HE2 H N N 487 LYS HE3 H N N 488 LYS HZ1 H N N 489 LYS HZ2 H N N 490 LYS HZ3 H N N 491 LYS HXT H N N 492 MSE N N N N 493 MSE CA C N S 494 MSE C C N N 495 MSE O O N N 496 MSE OXT O N N 497 MSE CB C N N 498 MSE CG C N N 499 MSE SE SE N N 500 MSE CE C N N 501 MSE H H N N 502 MSE H2 H N N 503 MSE HA H N N 504 MSE HXT H N N 505 MSE HB2 H N N 506 MSE HB3 H N N 507 MSE HG2 H N N 508 MSE HG3 H N N 509 MSE HE1 H N N 510 MSE HE2 H N N 511 MSE HE3 H N N 512 PHE N N N N 513 PHE CA C N S 514 PHE C C N N 515 PHE O O N N 516 PHE CB C N N 517 PHE CG C Y N 518 PHE CD1 C Y N 519 PHE CD2 C Y N 520 PHE CE1 C Y N 521 PHE CE2 C Y N 522 PHE CZ C Y N 523 PHE OXT O N N 524 PHE H H N N 525 PHE H2 H N N 526 PHE HA H N N 527 PHE HB2 H N N 528 PHE HB3 H N N 529 PHE HD1 H N N 530 PHE HD2 H N N 531 PHE HE1 H N N 532 PHE HE2 H N N 533 PHE HZ H N N 534 PHE HXT H N N 535 PRO N N N N 536 PRO CA C N S 537 PRO C C N N 538 PRO O O N N 539 PRO CB C N N 540 PRO CG C N N 541 PRO CD C N N 542 PRO OXT O N N 543 PRO H H N N 544 PRO HA H N N 545 PRO HB2 H N N 546 PRO HB3 H N N 547 PRO HG2 H N N 548 PRO HG3 H N N 549 PRO HD2 H N N 550 PRO HD3 H N N 551 PRO HXT H N N 552 SER N N N N 553 SER CA C N S 554 SER C C N N 555 SER O O N N 556 SER CB C N N 557 SER OG O N N 558 SER OXT O N N 559 SER H H N N 560 SER H2 H N N 561 SER HA H N N 562 SER HB2 H N N 563 SER HB3 H N N 564 SER HG H N N 565 SER HXT H N N 566 SO4 S S N N 567 SO4 O1 O N N 568 SO4 O2 O N N 569 SO4 O3 O N N 570 SO4 O4 O N N 571 THR N N N N 572 THR CA C N S 573 THR C C N N 574 THR O O N N 575 THR CB C N R 576 THR OG1 O N N 577 THR CG2 C N N 578 THR OXT O N N 579 THR H H N N 580 THR H2 H N N 581 THR HA H N N 582 THR HB H N N 583 THR HG1 H N N 584 THR HG21 H N N 585 THR HG22 H N N 586 THR HG23 H N N 587 THR HXT H N N 588 TRP N N N N 589 TRP CA C N S 590 TRP C C N N 591 TRP O O N N 592 TRP CB C N N 593 TRP CG C Y N 594 TRP CD1 C Y N 595 TRP CD2 C Y N 596 TRP NE1 N Y N 597 TRP CE2 C Y N 598 TRP CE3 C Y N 599 TRP CZ2 C Y N 600 TRP CZ3 C Y N 601 TRP CH2 C Y N 602 TRP OXT O N N 603 TRP H H N N 604 TRP H2 H N N 605 TRP HA H N N 606 TRP HB2 H N N 607 TRP HB3 H N N 608 TRP HD1 H N N 609 TRP HE1 H N N 610 TRP HE3 H N N 611 TRP HZ2 H N N 612 TRP HZ3 H N N 613 TRP HH2 H N N 614 TRP HXT H N N 615 TYR N N N N 616 TYR CA C N S 617 TYR C C N N 618 TYR O O N N 619 TYR CB C N N 620 TYR CG C Y N 621 TYR CD1 C Y N 622 TYR CD2 C Y N 623 TYR CE1 C Y N 624 TYR CE2 C Y N 625 TYR CZ C Y N 626 TYR OH O N N 627 TYR OXT O N N 628 TYR H H N N 629 TYR H2 H N N 630 TYR HA H N N 631 TYR HB2 H N N 632 TYR HB3 H N N 633 TYR HD1 H N N 634 TYR HD2 H N N 635 TYR HE1 H N N 636 TYR HE2 H N N 637 TYR HH H N N 638 TYR HXT H N N 639 U OP3 O N N 640 U P P N N 641 U OP1 O N N 642 U OP2 O N N 643 U "O5'" O N N 644 U "C5'" C N N 645 U "C4'" C N R 646 U "O4'" O N N 647 U "C3'" C N S 648 U "O3'" O N N 649 U "C2'" C N R 650 U "O2'" O N N 651 U "C1'" C N R 652 U N1 N N N 653 U C2 C N N 654 U O2 O N N 655 U N3 N N N 656 U C4 C N N 657 U O4 O N N 658 U C5 C N N 659 U C6 C N N 660 U HOP3 H N N 661 U HOP2 H N N 662 U "H5'" H N N 663 U "H5''" H N N 664 U "H4'" H N N 665 U "H3'" H N N 666 U "HO3'" H N N 667 U "H2'" H N N 668 U "HO2'" H N N 669 U "H1'" H N N 670 U H3 H N N 671 U H5 H N N 672 U H6 H N N 673 VAL N N N N 674 VAL CA C N S 675 VAL C C N N 676 VAL O O N N 677 VAL CB C N N 678 VAL CG1 C N N 679 VAL CG2 C N N 680 VAL OXT O N N 681 VAL H H N N 682 VAL H2 H N N 683 VAL HA H N N 684 VAL HB H N N 685 VAL HG11 H N N 686 VAL HG12 H N N 687 VAL HG13 H N N 688 VAL HG21 H N N 689 VAL HG22 H N N 690 VAL HG23 H N N 691 VAL HXT H N N 692 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 DA OP3 P sing N N 158 DA OP3 HOP3 sing N N 159 DA P OP1 doub N N 160 DA P OP2 sing N N 161 DA P "O5'" sing N N 162 DA OP2 HOP2 sing N N 163 DA "O5'" "C5'" sing N N 164 DA "C5'" "C4'" sing N N 165 DA "C5'" "H5'" sing N N 166 DA "C5'" "H5''" sing N N 167 DA "C4'" "O4'" sing N N 168 DA "C4'" "C3'" sing N N 169 DA "C4'" "H4'" sing N N 170 DA "O4'" "C1'" sing N N 171 DA "C3'" "O3'" sing N N 172 DA "C3'" "C2'" sing N N 173 DA "C3'" "H3'" sing N N 174 DA "O3'" "HO3'" sing N N 175 DA "C2'" "C1'" sing N N 176 DA "C2'" "H2'" sing N N 177 DA "C2'" "H2''" sing N N 178 DA "C1'" N9 sing N N 179 DA "C1'" "H1'" sing N N 180 DA N9 C8 sing Y N 181 DA N9 C4 sing Y N 182 DA C8 N7 doub Y N 183 DA C8 H8 sing N N 184 DA N7 C5 sing Y N 185 DA C5 C6 sing Y N 186 DA C5 C4 doub Y N 187 DA C6 N6 sing N N 188 DA C6 N1 doub Y N 189 DA N6 H61 sing N N 190 DA N6 H62 sing N N 191 DA N1 C2 sing Y N 192 DA C2 N3 doub Y N 193 DA C2 H2 sing N N 194 DA N3 C4 sing Y N 195 DC OP3 P sing N N 196 DC OP3 HOP3 sing N N 197 DC P OP1 doub N N 198 DC P OP2 sing N N 199 DC P "O5'" sing N N 200 DC OP2 HOP2 sing N N 201 DC "O5'" "C5'" sing N N 202 DC "C5'" "C4'" sing N N 203 DC "C5'" "H5'" sing N N 204 DC "C5'" "H5''" sing N N 205 DC "C4'" "O4'" sing N N 206 DC "C4'" "C3'" sing N N 207 DC "C4'" "H4'" sing N N 208 DC "O4'" "C1'" sing N N 209 DC "C3'" "O3'" sing N N 210 DC "C3'" "C2'" sing N N 211 DC "C3'" "H3'" sing N N 212 DC "O3'" "HO3'" sing N N 213 DC "C2'" "C1'" sing N N 214 DC "C2'" "H2'" sing N N 215 DC "C2'" "H2''" sing N N 216 DC "C1'" N1 sing N N 217 DC "C1'" "H1'" sing N N 218 DC N1 C2 sing N N 219 DC N1 C6 sing N N 220 DC C2 O2 doub N N 221 DC C2 N3 sing N N 222 DC N3 C4 doub N N 223 DC C4 N4 sing N N 224 DC C4 C5 sing N N 225 DC N4 H41 sing N N 226 DC N4 H42 sing N N 227 DC C5 C6 doub N N 228 DC C5 H5 sing N N 229 DC C6 H6 sing N N 230 DG OP3 P sing N N 231 DG OP3 HOP3 sing N N 232 DG P OP1 doub N N 233 DG P OP2 sing N N 234 DG P "O5'" sing N N 235 DG OP2 HOP2 sing N N 236 DG "O5'" "C5'" sing N N 237 DG "C5'" "C4'" sing N N 238 DG "C5'" "H5'" sing N N 239 DG "C5'" "H5''" sing N N 240 DG "C4'" "O4'" sing N N 241 DG "C4'" "C3'" sing N N 242 DG "C4'" "H4'" sing N N 243 DG "O4'" "C1'" sing N N 244 DG "C3'" "O3'" sing N N 245 DG "C3'" "C2'" sing N N 246 DG "C3'" "H3'" sing N N 247 DG "O3'" "HO3'" sing N N 248 DG "C2'" "C1'" sing N N 249 DG "C2'" "H2'" sing N N 250 DG "C2'" "H2''" sing N N 251 DG "C1'" N9 sing N N 252 DG "C1'" "H1'" sing N N 253 DG N9 C8 sing Y N 254 DG N9 C4 sing Y N 255 DG C8 N7 doub Y N 256 DG C8 H8 sing N N 257 DG N7 C5 sing Y N 258 DG C5 C6 sing N N 259 DG C5 C4 doub Y N 260 DG C6 O6 doub N N 261 DG C6 N1 sing N N 262 DG N1 C2 sing N N 263 DG N1 H1 sing N N 264 DG C2 N2 sing N N 265 DG C2 N3 doub N N 266 DG N2 H21 sing N N 267 DG N2 H22 sing N N 268 DG N3 C4 sing N N 269 DT OP3 P sing N N 270 DT OP3 HOP3 sing N N 271 DT P OP1 doub N N 272 DT P OP2 sing N N 273 DT P "O5'" sing N N 274 DT OP2 HOP2 sing N N 275 DT "O5'" "C5'" sing N N 276 DT "C5'" "C4'" sing N N 277 DT "C5'" "H5'" sing N N 278 DT "C5'" "H5''" sing N N 279 DT "C4'" "O4'" sing N N 280 DT "C4'" "C3'" sing N N 281 DT "C4'" "H4'" sing N N 282 DT "O4'" "C1'" sing N N 283 DT "C3'" "O3'" sing N N 284 DT "C3'" "C2'" sing N N 285 DT "C3'" "H3'" sing N N 286 DT "O3'" "HO3'" sing N N 287 DT "C2'" "C1'" sing N N 288 DT "C2'" "H2'" sing N N 289 DT "C2'" "H2''" sing N N 290 DT "C1'" N1 sing N N 291 DT "C1'" "H1'" sing N N 292 DT N1 C2 sing N N 293 DT N1 C6 sing N N 294 DT C2 O2 doub N N 295 DT C2 N3 sing N N 296 DT N3 C4 sing N N 297 DT N3 H3 sing N N 298 DT C4 O4 doub N N 299 DT C4 C5 sing N N 300 DT C5 C7 sing N N 301 DT C5 C6 doub N N 302 DT C7 H71 sing N N 303 DT C7 H72 sing N N 304 DT C7 H73 sing N N 305 DT C6 H6 sing N N 306 EDO C1 O1 sing N N 307 EDO C1 C2 sing N N 308 EDO C1 H11 sing N N 309 EDO C1 H12 sing N N 310 EDO O1 HO1 sing N N 311 EDO C2 O2 sing N N 312 EDO C2 H21 sing N N 313 EDO C2 H22 sing N N 314 EDO O2 HO2 sing N N 315 G OP3 P sing N N 316 G OP3 HOP3 sing N N 317 G P OP1 doub N N 318 G P OP2 sing N N 319 G P "O5'" sing N N 320 G OP2 HOP2 sing N N 321 G "O5'" "C5'" sing N N 322 G "C5'" "C4'" sing N N 323 G "C5'" "H5'" sing N N 324 G "C5'" "H5''" sing N N 325 G "C4'" "O4'" sing N N 326 G "C4'" "C3'" sing N N 327 G "C4'" "H4'" sing N N 328 G "O4'" "C1'" sing N N 329 G "C3'" "O3'" sing N N 330 G "C3'" "C2'" sing N N 331 G "C3'" "H3'" sing N N 332 G "O3'" "HO3'" sing N N 333 G "C2'" "O2'" sing N N 334 G "C2'" "C1'" sing N N 335 G "C2'" "H2'" sing N N 336 G "O2'" "HO2'" sing N N 337 G "C1'" N9 sing N N 338 G "C1'" "H1'" sing N N 339 G N9 C8 sing Y N 340 G N9 C4 sing Y N 341 G C8 N7 doub Y N 342 G C8 H8 sing N N 343 G N7 C5 sing Y N 344 G C5 C6 sing N N 345 G C5 C4 doub Y N 346 G C6 O6 doub N N 347 G C6 N1 sing N N 348 G N1 C2 sing N N 349 G N1 H1 sing N N 350 G C2 N2 sing N N 351 G C2 N3 doub N N 352 G N2 H21 sing N N 353 G N2 H22 sing N N 354 G N3 C4 sing N N 355 GLN N CA sing N N 356 GLN N H sing N N 357 GLN N H2 sing N N 358 GLN CA C sing N N 359 GLN CA CB sing N N 360 GLN CA HA sing N N 361 GLN C O doub N N 362 GLN C OXT sing N N 363 GLN CB CG sing N N 364 GLN CB HB2 sing N N 365 GLN CB HB3 sing N N 366 GLN CG CD sing N N 367 GLN CG HG2 sing N N 368 GLN CG HG3 sing N N 369 GLN CD OE1 doub N N 370 GLN CD NE2 sing N N 371 GLN NE2 HE21 sing N N 372 GLN NE2 HE22 sing N N 373 GLN OXT HXT sing N N 374 GLU N CA sing N N 375 GLU N H sing N N 376 GLU N H2 sing N N 377 GLU CA C sing N N 378 GLU CA CB sing N N 379 GLU CA HA sing N N 380 GLU C O doub N N 381 GLU C OXT sing N N 382 GLU CB CG sing N N 383 GLU CB HB2 sing N N 384 GLU CB HB3 sing N N 385 GLU CG CD sing N N 386 GLU CG HG2 sing N N 387 GLU CG HG3 sing N N 388 GLU CD OE1 doub N N 389 GLU CD OE2 sing N N 390 GLU OE2 HE2 sing N N 391 GLU OXT HXT sing N N 392 GLY N CA sing N N 393 GLY N H sing N N 394 GLY N H2 sing N N 395 GLY CA C sing N N 396 GLY CA HA2 sing N N 397 GLY CA HA3 sing N N 398 GLY C O doub N N 399 GLY C OXT sing N N 400 GLY OXT HXT sing N N 401 HIS N CA sing N N 402 HIS N H sing N N 403 HIS N H2 sing N N 404 HIS CA C sing N N 405 HIS CA CB sing N N 406 HIS CA HA sing N N 407 HIS C O doub N N 408 HIS C OXT sing N N 409 HIS CB CG sing N N 410 HIS CB HB2 sing N N 411 HIS CB HB3 sing N N 412 HIS CG ND1 sing Y N 413 HIS CG CD2 doub Y N 414 HIS ND1 CE1 doub Y N 415 HIS ND1 HD1 sing N N 416 HIS CD2 NE2 sing Y N 417 HIS CD2 HD2 sing N N 418 HIS CE1 NE2 sing Y N 419 HIS CE1 HE1 sing N N 420 HIS NE2 HE2 sing N N 421 HIS OXT HXT sing N N 422 HOH O H1 sing N N 423 HOH O H2 sing N N 424 ILE N CA sing N N 425 ILE N H sing N N 426 ILE N H2 sing N N 427 ILE CA C sing N N 428 ILE CA CB sing N N 429 ILE CA HA sing N N 430 ILE C O doub N N 431 ILE C OXT sing N N 432 ILE CB CG1 sing N N 433 ILE CB CG2 sing N N 434 ILE CB HB sing N N 435 ILE CG1 CD1 sing N N 436 ILE CG1 HG12 sing N N 437 ILE CG1 HG13 sing N N 438 ILE CG2 HG21 sing N N 439 ILE CG2 HG22 sing N N 440 ILE CG2 HG23 sing N N 441 ILE CD1 HD11 sing N N 442 ILE CD1 HD12 sing N N 443 ILE CD1 HD13 sing N N 444 ILE OXT HXT sing N N 445 LEU N CA sing N N 446 LEU N H sing N N 447 LEU N H2 sing N N 448 LEU CA C sing N N 449 LEU CA CB sing N N 450 LEU CA HA sing N N 451 LEU C O doub N N 452 LEU C OXT sing N N 453 LEU CB CG sing N N 454 LEU CB HB2 sing N N 455 LEU CB HB3 sing N N 456 LEU CG CD1 sing N N 457 LEU CG CD2 sing N N 458 LEU CG HG sing N N 459 LEU CD1 HD11 sing N N 460 LEU CD1 HD12 sing N N 461 LEU CD1 HD13 sing N N 462 LEU CD2 HD21 sing N N 463 LEU CD2 HD22 sing N N 464 LEU CD2 HD23 sing N N 465 LEU OXT HXT sing N N 466 LYS N CA sing N N 467 LYS N H sing N N 468 LYS N H2 sing N N 469 LYS CA C sing N N 470 LYS CA CB sing N N 471 LYS CA HA sing N N 472 LYS C O doub N N 473 LYS C OXT sing N N 474 LYS CB CG sing N N 475 LYS CB HB2 sing N N 476 LYS CB HB3 sing N N 477 LYS CG CD sing N N 478 LYS CG HG2 sing N N 479 LYS CG HG3 sing N N 480 LYS CD CE sing N N 481 LYS CD HD2 sing N N 482 LYS CD HD3 sing N N 483 LYS CE NZ sing N N 484 LYS CE HE2 sing N N 485 LYS CE HE3 sing N N 486 LYS NZ HZ1 sing N N 487 LYS NZ HZ2 sing N N 488 LYS NZ HZ3 sing N N 489 LYS OXT HXT sing N N 490 MSE N CA sing N N 491 MSE N H sing N N 492 MSE N H2 sing N N 493 MSE CA C sing N N 494 MSE CA CB sing N N 495 MSE CA HA sing N N 496 MSE C O doub N N 497 MSE C OXT sing N N 498 MSE OXT HXT sing N N 499 MSE CB CG sing N N 500 MSE CB HB2 sing N N 501 MSE CB HB3 sing N N 502 MSE CG SE sing N N 503 MSE CG HG2 sing N N 504 MSE CG HG3 sing N N 505 MSE SE CE sing N N 506 MSE CE HE1 sing N N 507 MSE CE HE2 sing N N 508 MSE CE HE3 sing N N 509 PHE N CA sing N N 510 PHE N H sing N N 511 PHE N H2 sing N N 512 PHE CA C sing N N 513 PHE CA CB sing N N 514 PHE CA HA sing N N 515 PHE C O doub N N 516 PHE C OXT sing N N 517 PHE CB CG sing N N 518 PHE CB HB2 sing N N 519 PHE CB HB3 sing N N 520 PHE CG CD1 doub Y N 521 PHE CG CD2 sing Y N 522 PHE CD1 CE1 sing Y N 523 PHE CD1 HD1 sing N N 524 PHE CD2 CE2 doub Y N 525 PHE CD2 HD2 sing N N 526 PHE CE1 CZ doub Y N 527 PHE CE1 HE1 sing N N 528 PHE CE2 CZ sing Y N 529 PHE CE2 HE2 sing N N 530 PHE CZ HZ sing N N 531 PHE OXT HXT sing N N 532 PRO N CA sing N N 533 PRO N CD sing N N 534 PRO N H sing N N 535 PRO CA C sing N N 536 PRO CA CB sing N N 537 PRO CA HA sing N N 538 PRO C O doub N N 539 PRO C OXT sing N N 540 PRO CB CG sing N N 541 PRO CB HB2 sing N N 542 PRO CB HB3 sing N N 543 PRO CG CD sing N N 544 PRO CG HG2 sing N N 545 PRO CG HG3 sing N N 546 PRO CD HD2 sing N N 547 PRO CD HD3 sing N N 548 PRO OXT HXT sing N N 549 SER N CA sing N N 550 SER N H sing N N 551 SER N H2 sing N N 552 SER CA C sing N N 553 SER CA CB sing N N 554 SER CA HA sing N N 555 SER C O doub N N 556 SER C OXT sing N N 557 SER CB OG sing N N 558 SER CB HB2 sing N N 559 SER CB HB3 sing N N 560 SER OG HG sing N N 561 SER OXT HXT sing N N 562 SO4 S O1 doub N N 563 SO4 S O2 doub N N 564 SO4 S O3 sing N N 565 SO4 S O4 sing N N 566 THR N CA sing N N 567 THR N H sing N N 568 THR N H2 sing N N 569 THR CA C sing N N 570 THR CA CB sing N N 571 THR CA HA sing N N 572 THR C O doub N N 573 THR C OXT sing N N 574 THR CB OG1 sing N N 575 THR CB CG2 sing N N 576 THR CB HB sing N N 577 THR OG1 HG1 sing N N 578 THR CG2 HG21 sing N N 579 THR CG2 HG22 sing N N 580 THR CG2 HG23 sing N N 581 THR OXT HXT sing N N 582 TRP N CA sing N N 583 TRP N H sing N N 584 TRP N H2 sing N N 585 TRP CA C sing N N 586 TRP CA CB sing N N 587 TRP CA HA sing N N 588 TRP C O doub N N 589 TRP C OXT sing N N 590 TRP CB CG sing N N 591 TRP CB HB2 sing N N 592 TRP CB HB3 sing N N 593 TRP CG CD1 doub Y N 594 TRP CG CD2 sing Y N 595 TRP CD1 NE1 sing Y N 596 TRP CD1 HD1 sing N N 597 TRP CD2 CE2 doub Y N 598 TRP CD2 CE3 sing Y N 599 TRP NE1 CE2 sing Y N 600 TRP NE1 HE1 sing N N 601 TRP CE2 CZ2 sing Y N 602 TRP CE3 CZ3 doub Y N 603 TRP CE3 HE3 sing N N 604 TRP CZ2 CH2 doub Y N 605 TRP CZ2 HZ2 sing N N 606 TRP CZ3 CH2 sing Y N 607 TRP CZ3 HZ3 sing N N 608 TRP CH2 HH2 sing N N 609 TRP OXT HXT sing N N 610 TYR N CA sing N N 611 TYR N H sing N N 612 TYR N H2 sing N N 613 TYR CA C sing N N 614 TYR CA CB sing N N 615 TYR CA HA sing N N 616 TYR C O doub N N 617 TYR C OXT sing N N 618 TYR CB CG sing N N 619 TYR CB HB2 sing N N 620 TYR CB HB3 sing N N 621 TYR CG CD1 doub Y N 622 TYR CG CD2 sing Y N 623 TYR CD1 CE1 sing Y N 624 TYR CD1 HD1 sing N N 625 TYR CD2 CE2 doub Y N 626 TYR CD2 HD2 sing N N 627 TYR CE1 CZ doub Y N 628 TYR CE1 HE1 sing N N 629 TYR CE2 CZ sing Y N 630 TYR CE2 HE2 sing N N 631 TYR CZ OH sing N N 632 TYR OH HH sing N N 633 TYR OXT HXT sing N N 634 U OP3 P sing N N 635 U OP3 HOP3 sing N N 636 U P OP1 doub N N 637 U P OP2 sing N N 638 U P "O5'" sing N N 639 U OP2 HOP2 sing N N 640 U "O5'" "C5'" sing N N 641 U "C5'" "C4'" sing N N 642 U "C5'" "H5'" sing N N 643 U "C5'" "H5''" sing N N 644 U "C4'" "O4'" sing N N 645 U "C4'" "C3'" sing N N 646 U "C4'" "H4'" sing N N 647 U "O4'" "C1'" sing N N 648 U "C3'" "O3'" sing N N 649 U "C3'" "C2'" sing N N 650 U "C3'" "H3'" sing N N 651 U "O3'" "HO3'" sing N N 652 U "C2'" "O2'" sing N N 653 U "C2'" "C1'" sing N N 654 U "C2'" "H2'" sing N N 655 U "O2'" "HO2'" sing N N 656 U "C1'" N1 sing N N 657 U "C1'" "H1'" sing N N 658 U N1 C2 sing N N 659 U N1 C6 sing N N 660 U C2 O2 doub N N 661 U C2 N3 sing N N 662 U N3 C4 sing N N 663 U N3 H3 sing N N 664 U C4 O4 doub N N 665 U C4 C5 sing N N 666 U C5 C6 doub N N 667 U C5 H5 sing N N 668 U C6 H6 sing N N 669 VAL N CA sing N N 670 VAL N H sing N N 671 VAL N H2 sing N N 672 VAL CA C sing N N 673 VAL CA CB sing N N 674 VAL CA HA sing N N 675 VAL C O doub N N 676 VAL C OXT sing N N 677 VAL CB CG1 sing N N 678 VAL CB CG2 sing N N 679 VAL CB HB sing N N 680 VAL CG1 HG11 sing N N 681 VAL CG1 HG12 sing N N 682 VAL CG1 HG13 sing N N 683 VAL CG2 HG21 sing N N 684 VAL CG2 HG22 sing N N 685 VAL CG2 HG23 sing N N 686 VAL OXT HXT sing N N 687 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2QKB 'double helix' 2QKB 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 B DC 19 1_555 -0.248 -0.343 0.016 0.508 -4.874 -7.179 1 C_G2:DC39_D C 2 ? D 39 ? 19 1 1 A A 3 1_555 B DT 18 1_555 0.023 -0.046 -0.761 -20.641 -17.879 7.327 2 C_A3:DT38_D C 3 ? D 38 ? 20 1 1 A G 4 1_555 B DC 17 1_555 0.402 -0.045 -0.413 -16.131 -11.912 -2.673 3 C_G4:DC37_D C 4 ? D 37 ? 19 1 1 A U 5 1_555 B DA 16 1_555 0.028 -0.325 -0.049 -8.285 -5.132 -4.675 4 C_U5:DA36_D C 5 ? D 36 ? 20 1 1 A G 6 1_555 B DC 15 1_555 -0.410 -0.080 -0.125 -8.506 -14.350 -1.320 5 C_G6:DC35_D C 6 ? D 35 ? 19 1 1 A C 7 1_555 B DG 14 1_555 0.394 0.045 0.305 -21.464 -9.217 2.614 6 C_C7:DG34_D C 7 ? D 34 ? 19 1 1 A G 8 1_555 B DC 13 1_555 0.001 -0.164 -0.248 -21.650 -14.744 -1.834 7 C_G8:DC33_D C 8 ? D 33 ? 19 1 1 A A 9 1_555 B DT 12 1_555 0.012 0.042 -0.003 -17.539 -3.633 -0.380 8 C_A9:DT32_D C 9 ? D 32 ? 20 1 1 A C 10 1_555 B DG 11 1_555 0.104 -0.080 -0.049 -0.106 -13.802 0.952 9 C_C10:DG31_D C 10 ? D 31 ? 19 1 1 A A 11 1_555 B DT 10 1_555 -0.058 -0.049 -0.201 -6.917 -6.855 -5.961 10 C_A11:DT30_D C 11 ? D 30 ? 20 1 1 A C 12 1_555 B DG 9 1_555 -0.005 -0.234 0.259 -1.698 -7.219 1.891 11 C_C12:DG29_D C 12 ? D 29 ? 19 1 1 A C 13 1_555 B DG 8 1_555 0.036 -0.222 0.030 1.770 -18.704 -0.808 12 C_C13:DG28_D C 13 ? D 28 ? 19 1 1 A U 14 1_555 B DA 7 1_555 0.059 -0.296 0.149 -16.496 -12.355 -1.131 13 C_U14:DA27_D C 14 ? D 27 ? 20 1 1 A G 15 1_555 B DC 6 1_555 0.104 -0.182 -0.184 -18.777 -10.420 1.385 14 C_G15:DC26_D C 15 ? D 26 ? 19 1 1 A A 16 1_555 B DT 5 1_555 0.307 -0.144 -0.461 -13.780 -8.523 2.278 15 C_A16:DT25_D C 16 ? D 25 ? 20 1 1 A U 17 1_555 B DA 4 1_555 -0.056 -0.070 0.419 -10.024 -9.567 -2.672 16 C_U17:DA24_D C 17 ? D 24 ? 20 1 1 A U 18 1_555 B DA 3 1_555 -0.049 -0.155 -0.202 -1.196 -13.815 -0.971 17 C_U18:DA23_D C 18 ? D 23 ? 20 1 1 A C 19 1_555 B DG 2 1_555 -0.251 -0.173 -0.057 -9.919 -11.021 2.816 18 C_C19:DG22_D C 19 ? D 22 ? 19 1 1 A C 20 1_555 B DG 1 1_555 1.509 -0.547 -0.420 0.955 -2.354 -14.605 19 C_C20:DG21_D C 20 ? D 21 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 B DC 19 1_555 A A 3 1_555 B DT 18 1_555 0.784 -1.174 3.836 12.392 10.046 37.521 -2.996 0.482 3.502 14.825 -18.287 40.658 1 CC_G2A3:DT38DC39_DD C 2 ? D 39 ? C 3 ? D 38 ? 1 A A 3 1_555 B DT 18 1_555 A G 4 1_555 B DC 17 1_555 0.490 -1.360 3.370 -0.105 2.684 27.854 -3.455 -1.038 3.225 5.560 0.217 27.981 2 CC_A3G4:DC37DT38_DD C 3 ? D 38 ? C 4 ? D 37 ? 1 A G 4 1_555 B DC 17 1_555 A U 5 1_555 B DA 16 1_555 -0.072 -1.253 3.083 0.196 2.842 30.274 -2.915 0.174 2.955 5.426 -0.374 30.405 3 CC_G4U5:DA36DC37_DD C 4 ? D 37 ? C 5 ? D 36 ? 1 A U 5 1_555 B DA 16 1_555 A G 6 1_555 B DC 15 1_555 0.494 -1.414 3.218 3.862 6.283 28.494 -4.062 -0.188 2.887 12.502 -7.685 29.414 4 CC_U5G6:DC35DA36_DD C 5 ? D 36 ? C 6 ? D 35 ? 1 A G 6 1_555 B DC 15 1_555 A C 7 1_555 B DG 14 1_555 0.254 -1.298 3.580 1.883 3.129 36.665 -2.513 -0.126 3.470 4.959 -2.983 36.841 5 CC_G6C7:DG34DC35_DD C 6 ? D 35 ? C 7 ? D 34 ? 1 A C 7 1_555 B DG 14 1_555 A G 8 1_555 B DC 13 1_555 0.182 -1.111 3.426 4.331 11.704 32.167 -3.691 0.364 2.861 20.199 -7.475 34.444 6 CC_C7G8:DC33DG34_DD C 7 ? D 34 ? C 8 ? D 33 ? 1 A G 8 1_555 B DC 13 1_555 A A 9 1_555 B DT 12 1_555 0.222 -0.835 3.288 0.663 5.006 28.404 -2.775 -0.300 3.102 10.101 -1.337 28.841 7 CC_G8A9:DT32DC33_DD C 8 ? D 33 ? C 9 ? D 32 ? 1 A A 9 1_555 B DT 12 1_555 A C 10 1_555 B DG 11 1_555 -0.513 -0.559 3.042 1.550 13.531 23.458 -4.224 1.443 2.337 30.234 -3.464 27.077 8 CC_A9C10:DG31DT32_DD C 9 ? D 32 ? C 10 ? D 31 ? 1 A C 10 1_555 B DG 11 1_555 A A 11 1_555 B DT 10 1_555 0.467 -1.676 3.465 4.953 2.798 26.905 -4.245 0.292 3.308 5.929 -10.497 27.489 9 CC_C10A11:DT30DG31_DD C 10 ? D 31 ? C 11 ? D 30 ? 1 A A 11 1_555 B DT 10 1_555 A C 12 1_555 B DG 9 1_555 0.855 -1.504 3.179 -1.911 -1.504 35.223 -2.263 -1.686 3.189 -2.482 3.153 35.304 10 CC_A11C12:DG29DT30_DD C 11 ? D 30 ? C 12 ? D 29 ? 1 A C 12 1_555 B DG 9 1_555 A C 13 1_555 B DG 8 1_555 0.909 -2.634 3.029 7.779 8.766 21.375 -8.510 -0.146 2.014 21.662 -19.223 24.345 11 CC_C12C13:DG28DG29_DD C 12 ? D 29 ? C 13 ? D 28 ? 1 A C 13 1_555 B DG 8 1_555 A U 14 1_555 B DA 7 1_555 -0.233 -0.995 3.650 0.146 9.234 37.019 -2.788 0.376 3.316 14.272 -0.226 38.114 12 CC_C13U14:DA27DG28_DD C 13 ? D 28 ? C 14 ? D 27 ? 1 A U 14 1_555 B DA 7 1_555 A G 15 1_555 B DC 6 1_555 0.752 -1.395 3.551 3.306 6.380 31.313 -3.731 -0.734 3.270 11.630 -6.027 32.107 13 CC_U14G15:DC26DA27_DD C 14 ? D 27 ? C 15 ? D 26 ? 1 A G 15 1_555 B DC 6 1_555 A A 16 1_555 B DT 5 1_555 0.103 -0.988 3.350 5.269 7.139 30.349 -3.130 0.782 3.020 13.283 -9.803 31.591 14 CC_G15A16:DT25DC26_DD C 15 ? D 26 ? C 16 ? D 25 ? 1 A A 16 1_555 B DT 5 1_555 A U 17 1_555 B DA 4 1_555 -1.115 -0.902 3.317 -7.102 19.119 21.896 -5.610 0.732 2.138 40.727 15.129 29.838 15 CC_A16U17:DA24DT25_DD C 16 ? D 25 ? C 17 ? D 24 ? 1 A U 17 1_555 B DA 4 1_555 A U 18 1_555 B DA 3 1_555 0.222 -1.072 3.098 6.508 -5.077 28.728 -1.042 0.899 3.209 -9.974 -12.786 29.866 16 CC_U17U18:DA23DA24_DD C 17 ? D 24 ? C 18 ? D 23 ? 1 A U 18 1_555 B DA 3 1_555 A C 19 1_555 B DG 2 1_555 0.540 -1.443 3.397 0.078 6.462 35.207 -3.280 -0.867 3.094 10.573 -0.127 35.777 17 CC_U18C19:DG22DA23_DD C 18 ? D 23 ? C 19 ? D 22 ? 1 A C 19 1_555 B DG 2 1_555 A C 20 1_555 B DG 1 1_555 -0.144 -2.254 3.063 6.964 5.522 34.974 -4.332 1.103 2.613 9.009 -11.362 36.052 18 CC_C19C20:DG21DG22_DD C 19 ? D 22 ? C 20 ? D 21 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'SULFATE ION' SO4 5 1,2-ETHANEDIOL EDO 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2QK9 _pdbx_initial_refinement_model.details ? #