data_2QKL # _entry.id 2QKL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QKL RCSB RCSB043715 WWPDB D_1000043715 # _pdbx_database_status.entry_id 2QKL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-07-11 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'She, M.' 1 'Chen, N.' 2 'Song, H.' 3 # _citation.id primary _citation.title 'Structural basis of dcp2 recognition and activation by dcp1.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 29 _citation.page_first 337 _citation.page_last 349 _citation.year 2008 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18280239 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2008.01.002 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'She, M.' 1 primary 'Decker, C.J.' 2 primary 'Svergun, D.I.' 3 primary 'Round, A.' 4 primary 'Chen, N.' 5 primary 'Muhlrad, D.' 6 primary 'Parker, R.' 7 primary 'Song, H.' 8 # _cell.entry_id 2QKL _cell.length_a 42.723 _cell.length_b 49.665 _cell.length_c 115.052 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QKL _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SPBC3B9.21 protein' 15002.142 1 ? ? ? ? 2 polymer man 'SPAC19A8.12 protein' 11302.781 1 3.6.1.30 ? 'Residues 1-95' ? 3 non-polymer syn 'LEAD (II) ION' 207.200 1 ? ? ? ? 4 water nat water 18.015 42 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Dcp1 protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MEDENILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQRARVGYVILNRNSPENLYLF INHPSNVHLVDRYLIHRTENQHVVGLWMFDPNDMSRIFNIVKESLLR ; ;MEDENILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQRARVGYVILNRNSPENLYLF INHPSNVHLVDRYLIHRTENQHVVGLWMFDPNDMSRIFNIVKESLLR ; A ? 2 'polypeptide(L)' no no ;MSFTNATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLLWKWSK VHEEAFDDFLRYKTR ; ;MSFTNATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLLWKWSK VHEEAFDDFLRYKTR ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 ASP n 1 4 GLU n 1 5 ASN n 1 6 ILE n 1 7 LEU n 1 8 ARG n 1 9 ASN n 1 10 ALA n 1 11 VAL n 1 12 ASN n 1 13 LEU n 1 14 GLN n 1 15 VAL n 1 16 LEU n 1 17 LYS n 1 18 PHE n 1 19 HIS n 1 20 TYR n 1 21 PRO n 1 22 GLU n 1 23 ILE n 1 24 GLU n 1 25 SER n 1 26 ILE n 1 27 ILE n 1 28 ASP n 1 29 ILE n 1 30 ALA n 1 31 SER n 1 32 HIS n 1 33 VAL n 1 34 ALA n 1 35 VAL n 1 36 TYR n 1 37 GLN n 1 38 PHE n 1 39 ASP n 1 40 VAL n 1 41 GLY n 1 42 SER n 1 43 GLN n 1 44 LYS n 1 45 TRP n 1 46 LEU n 1 47 LYS n 1 48 THR n 1 49 SER n 1 50 ILE n 1 51 GLU n 1 52 GLY n 1 53 THR n 1 54 PHE n 1 55 PHE n 1 56 LEU n 1 57 VAL n 1 58 LYS n 1 59 ASP n 1 60 GLN n 1 61 ARG n 1 62 ALA n 1 63 ARG n 1 64 VAL n 1 65 GLY n 1 66 TYR n 1 67 VAL n 1 68 ILE n 1 69 LEU n 1 70 ASN n 1 71 ARG n 1 72 ASN n 1 73 SER n 1 74 PRO n 1 75 GLU n 1 76 ASN n 1 77 LEU n 1 78 TYR n 1 79 LEU n 1 80 PHE n 1 81 ILE n 1 82 ASN n 1 83 HIS n 1 84 PRO n 1 85 SER n 1 86 ASN n 1 87 VAL n 1 88 HIS n 1 89 LEU n 1 90 VAL n 1 91 ASP n 1 92 ARG n 1 93 TYR n 1 94 LEU n 1 95 ILE n 1 96 HIS n 1 97 ARG n 1 98 THR n 1 99 GLU n 1 100 ASN n 1 101 GLN n 1 102 HIS n 1 103 VAL n 1 104 VAL n 1 105 GLY n 1 106 LEU n 1 107 TRP n 1 108 MET n 1 109 PHE n 1 110 ASP n 1 111 PRO n 1 112 ASN n 1 113 ASP n 1 114 MET n 1 115 SER n 1 116 ARG n 1 117 ILE n 1 118 PHE n 1 119 ASN n 1 120 ILE n 1 121 VAL n 1 122 LYS n 1 123 GLU n 1 124 SER n 1 125 LEU n 1 126 LEU n 1 127 ARG n 2 1 MET n 2 2 SER n 2 3 PHE n 2 4 THR n 2 5 ASN n 2 6 ALA n 2 7 THR n 2 8 PHE n 2 9 SER n 2 10 GLN n 2 11 VAL n 2 12 LEU n 2 13 ASP n 2 14 ASP n 2 15 LEU n 2 16 SER n 2 17 ALA n 2 18 ARG n 2 19 PHE n 2 20 ILE n 2 21 LEU n 2 22 ASN n 2 23 LEU n 2 24 PRO n 2 25 ALA n 2 26 GLU n 2 27 GLU n 2 28 GLN n 2 29 SER n 2 30 SER n 2 31 VAL n 2 32 GLU n 2 33 ARG n 2 34 LEU n 2 35 CYS n 2 36 PHE n 2 37 GLN n 2 38 ILE n 2 39 GLU n 2 40 GLN n 2 41 ALA n 2 42 HIS n 2 43 TRP n 2 44 PHE n 2 45 TYR n 2 46 GLU n 2 47 ASP n 2 48 PHE n 2 49 ILE n 2 50 ARG n 2 51 ALA n 2 52 GLN n 2 53 ASN n 2 54 ASP n 2 55 GLN n 2 56 LEU n 2 57 PRO n 2 58 SER n 2 59 LEU n 2 60 GLY n 2 61 LEU n 2 62 ARG n 2 63 VAL n 2 64 PHE n 2 65 SER n 2 66 ALA n 2 67 LYS n 2 68 LEU n 2 69 PHE n 2 70 ALA n 2 71 HIS n 2 72 CYS n 2 73 PRO n 2 74 LEU n 2 75 LEU n 2 76 TRP n 2 77 LYS n 2 78 TRP n 2 79 SER n 2 80 LYS n 2 81 VAL n 2 82 HIS n 2 83 GLU n 2 84 GLU n 2 85 ALA n 2 86 PHE n 2 87 ASP n 2 88 ASP n 2 89 PHE n 2 90 LEU n 2 91 ARG n 2 92 TYR n 2 93 LYS n 2 94 THR n 2 95 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? 'fission yeast' Schizosaccharomyces dcp1 ? ? ? ? ? ? 'Schizosaccharomyces pombe' 4896 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'BL21 star' ? ? ? ? ? ? ? ? ? ? ? pGEX-6p-1 ? ? 2 1 sample ? ? ? 'fission yeast' Schizosaccharomyces SPAC19A8.12 ? ? ? ? ? ? 'Schizosaccharomyces pombe' 4896 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? 'BL21 star' ? ? ? ? ? ? ? ? ? ? ? pGEX-6p-1 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q9P805_SCHPO Q9P805 1 ;MEDENILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQRARVGYVILNRNSPENLYLF INHPSNVHLVDRYLIHRTENQHVVGLWMFDPNDMSRIFNIVKESLLR ; 1 ? 2 UNP O13828_SCHPO O13828 2 ;MSFTNATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLLWKWSK VHEEAFDDFLRYKTR ; 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QKL A 1 ? 127 ? Q9P805 1 ? 127 ? 1 127 2 2 2QKL B 1 ? 95 ? O13828 1 ? 95 ? 1 95 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PB non-polymer . 'LEAD (II) ION' ? 'Pb 2' 207.200 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2QKL _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1 M Ammonium Acetate and 5% PEG3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2005-10-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E+ SUPERBRIGHT' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2QKL _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.d_resolution_high 2.33 _reflns.d_resolution_low 20.0 _reflns.number_all 12284 _reflns.number_obs 11066 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.33 _reflns_shell.d_res_low 2.39 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.345 _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 9.5 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QKL _refine.ls_d_res_high 2.330 _refine.ls_d_res_low 20.000 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.970 _refine.ls_number_reflns_obs 10983 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.229 _refine.ls_R_factor_R_work 0.227 _refine.ls_R_factor_R_free 0.259 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 563 _refine.B_iso_mean 48.623 _refine.aniso_B[1][1] -0.340 _refine.aniso_B[2][2] -0.070 _refine.aniso_B[3][3] 0.410 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.940 _refine.correlation_coeff_Fo_to_Fc_free 0.934 _refine.pdbx_overall_ESU_R 0.411 _refine.pdbx_overall_ESU_R_Free 0.257 _refine.overall_SU_ML 0.187 _refine.overall_SU_B 14.972 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 12284 _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1769 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 1812 _refine_hist.d_res_high 2.330 _refine_hist.d_res_low 20.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1822 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2470 1.258 1.929 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 208 6.086 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 101 36.396 23.762 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 306 15.885 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 19.968 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 268 0.085 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1412 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 692 0.199 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1210 0.304 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 55 0.155 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 48 0.222 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.101 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1064 0.426 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1722 0.836 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 832 1.322 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 748 2.111 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.330 _refine_ls_shell.d_res_low 2.390 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.750 _refine_ls_shell.number_reflns_R_work 741 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.289 _refine_ls_shell.R_factor_R_free 0.390 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 49 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 790 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QKL _struct.title 'The crystal structure of fission yeast mRNA decapping enzyme Dcp1-Dcp2 complex' _struct.pdbx_descriptor 'SPBC3B9.21 protein, SPAC19A8.12 protein (E.C.3.6.1.30)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QKL _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'protein-protein complex, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details 'The asymmetric unit contains one biological unit of Dcp1-Dcp2 complex' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 2 ? TYR A 20 ? GLU A 2 TYR A 20 1 ? 19 HELX_P HELX_P2 2 HIS A 83 ? SER A 85 ? HIS A 83 SER A 85 5 ? 3 HELX_P HELX_P3 3 PRO A 111 ? LEU A 125 ? PRO A 111 LEU A 125 1 ? 15 HELX_P HELX_P4 4 THR B 7 ? ILE B 20 ? THR B 7 ILE B 20 1 ? 14 HELX_P HELX_P5 5 PRO B 24 ? GLN B 28 ? PRO B 24 GLN B 28 5 ? 5 HELX_P HELX_P6 6 SER B 30 ? PHE B 48 ? SER B 30 PHE B 48 1 ? 19 HELX_P HELX_P7 7 GLY B 60 ? CYS B 72 ? GLY B 60 CYS B 72 1 ? 13 HELX_P HELX_P8 8 PRO B 73 ? LYS B 80 ? PRO B 73 LYS B 80 1 ? 8 HELX_P HELX_P9 9 HIS B 82 ? ARG B 91 ? HIS B 82 ARG B 91 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 77 ? ILE A 81 ? LEU A 77 ILE A 81 A 2 VAL A 64 ? ASN A 70 ? VAL A 64 ASN A 70 A 3 LYS A 47 ? ASP A 59 ? LYS A 47 ASP A 59 A 4 ILE A 23 ? TYR A 36 ? ILE A 23 TYR A 36 A 5 HIS A 102 ? MET A 108 ? HIS A 102 MET A 108 A 6 TYR A 93 ? THR A 98 ? TYR A 93 THR A 98 A 7 VAL A 87 ? VAL A 90 ? VAL A 87 VAL A 90 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 81 ? O ILE A 81 N VAL A 64 ? N VAL A 64 A 2 3 O VAL A 67 ? O VAL A 67 N PHE A 55 ? N PHE A 55 A 3 4 O LEU A 56 ? O LEU A 56 N ILE A 27 ? N ILE A 27 A 4 5 N TYR A 36 ? N TYR A 36 O GLY A 105 ? O GLY A 105 A 5 6 O VAL A 104 ? O VAL A 104 N HIS A 96 ? N HIS A 96 A 6 7 O ILE A 95 ? O ILE A 95 N HIS A 88 ? N HIS A 88 # _atom_sites.entry_id 2QKL _atom_sites.fract_transf_matrix[1][1] 0.023407 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020135 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008692 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O PB S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 HIS 19 19 19 HIS HIS A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ASP 39 39 ? ? ? A . n A 1 40 VAL 40 40 ? ? ? A . n A 1 41 GLY 41 41 ? ? ? A . n A 1 42 SER 42 42 ? ? ? A . n A 1 43 GLN 43 43 ? ? ? A . n A 1 44 LYS 44 44 ? ? ? A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 HIS 83 83 83 HIS HIS A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 HIS 102 102 102 HIS HIS A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 TRP 107 107 107 TRP TRP A . n A 1 108 MET 108 108 108 MET MET A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 MET 114 114 114 MET MET A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 ASN 119 119 119 ASN ASN A . n A 1 120 ILE 120 120 120 ILE ILE A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 ARG 127 127 127 ARG ARG A . n B 2 1 MET 1 1 ? ? ? B . n B 2 2 SER 2 2 2 SER SER B . n B 2 3 PHE 3 3 3 PHE PHE B . n B 2 4 THR 4 4 4 THR THR B . n B 2 5 ASN 5 5 5 ASN ASN B . n B 2 6 ALA 6 6 6 ALA ALA B . n B 2 7 THR 7 7 7 THR THR B . n B 2 8 PHE 8 8 8 PHE PHE B . n B 2 9 SER 9 9 9 SER SER B . n B 2 10 GLN 10 10 10 GLN GLN B . n B 2 11 VAL 11 11 11 VAL VAL B . n B 2 12 LEU 12 12 12 LEU LEU B . n B 2 13 ASP 13 13 13 ASP ASP B . n B 2 14 ASP 14 14 14 ASP ASP B . n B 2 15 LEU 15 15 15 LEU LEU B . n B 2 16 SER 16 16 16 SER SER B . n B 2 17 ALA 17 17 17 ALA ALA B . n B 2 18 ARG 18 18 18 ARG ARG B . n B 2 19 PHE 19 19 19 PHE PHE B . n B 2 20 ILE 20 20 20 ILE ILE B . n B 2 21 LEU 21 21 21 LEU LEU B . n B 2 22 ASN 22 22 22 ASN ASN B . n B 2 23 LEU 23 23 23 LEU LEU B . n B 2 24 PRO 24 24 24 PRO PRO B . n B 2 25 ALA 25 25 25 ALA ALA B . n B 2 26 GLU 26 26 26 GLU GLU B . n B 2 27 GLU 27 27 27 GLU GLU B . n B 2 28 GLN 28 28 28 GLN GLN B . n B 2 29 SER 29 29 29 SER SER B . n B 2 30 SER 30 30 30 SER SER B . n B 2 31 VAL 31 31 31 VAL VAL B . n B 2 32 GLU 32 32 32 GLU GLU B . n B 2 33 ARG 33 33 33 ARG ARG B . n B 2 34 LEU 34 34 34 LEU LEU B . n B 2 35 CYS 35 35 35 CYS CYS B . n B 2 36 PHE 36 36 36 PHE PHE B . n B 2 37 GLN 37 37 37 GLN GLN B . n B 2 38 ILE 38 38 38 ILE ILE B . n B 2 39 GLU 39 39 39 GLU GLU B . n B 2 40 GLN 40 40 40 GLN GLN B . n B 2 41 ALA 41 41 41 ALA ALA B . n B 2 42 HIS 42 42 42 HIS HIS B . n B 2 43 TRP 43 43 43 TRP TRP B . n B 2 44 PHE 44 44 44 PHE PHE B . n B 2 45 TYR 45 45 45 TYR TYR B . n B 2 46 GLU 46 46 46 GLU GLU B . n B 2 47 ASP 47 47 47 ASP ASP B . n B 2 48 PHE 48 48 48 PHE PHE B . n B 2 49 ILE 49 49 49 ILE ILE B . n B 2 50 ARG 50 50 50 ARG ARG B . n B 2 51 ALA 51 51 51 ALA ALA B . n B 2 52 GLN 52 52 52 GLN GLN B . n B 2 53 ASN 53 53 53 ASN ASN B . n B 2 54 ASP 54 54 54 ASP ASP B . n B 2 55 GLN 55 55 55 GLN GLN B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 PRO 57 57 57 PRO PRO B . n B 2 58 SER 58 58 58 SER SER B . n B 2 59 LEU 59 59 59 LEU LEU B . n B 2 60 GLY 60 60 60 GLY GLY B . n B 2 61 LEU 61 61 61 LEU LEU B . n B 2 62 ARG 62 62 62 ARG ARG B . n B 2 63 VAL 63 63 63 VAL VAL B . n B 2 64 PHE 64 64 64 PHE PHE B . n B 2 65 SER 65 65 65 SER SER B . n B 2 66 ALA 66 66 66 ALA ALA B . n B 2 67 LYS 67 67 67 LYS LYS B . n B 2 68 LEU 68 68 68 LEU LEU B . n B 2 69 PHE 69 69 69 PHE PHE B . n B 2 70 ALA 70 70 70 ALA ALA B . n B 2 71 HIS 71 71 71 HIS HIS B . n B 2 72 CYS 72 72 72 CYS CYS B . n B 2 73 PRO 73 73 73 PRO PRO B . n B 2 74 LEU 74 74 74 LEU LEU B . n B 2 75 LEU 75 75 75 LEU LEU B . n B 2 76 TRP 76 76 76 TRP TRP B . n B 2 77 LYS 77 77 77 LYS LYS B . n B 2 78 TRP 78 78 78 TRP TRP B . n B 2 79 SER 79 79 79 SER SER B . n B 2 80 LYS 80 80 80 LYS LYS B . n B 2 81 VAL 81 81 81 VAL VAL B . n B 2 82 HIS 82 82 82 HIS HIS B . n B 2 83 GLU 83 83 83 GLU GLU B . n B 2 84 GLU 84 84 84 GLU GLU B . n B 2 85 ALA 85 85 85 ALA ALA B . n B 2 86 PHE 86 86 86 PHE PHE B . n B 2 87 ASP 87 87 87 ASP ASP B . n B 2 88 ASP 88 88 88 ASP ASP B . n B 2 89 PHE 89 89 89 PHE PHE B . n B 2 90 LEU 90 90 90 LEU LEU B . n B 2 91 ARG 91 91 91 ARG ARG B . n B 2 92 TYR 92 92 ? ? ? B . n B 2 93 LYS 93 93 ? ? ? B . n B 2 94 THR 94 94 ? ? ? B . n B 2 95 ARG 95 95 ? ? ? B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-03-25 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 61.9061 12.1877 6.7830 -0.2041 -0.1817 -0.1753 -0.0208 0.0077 -0.0052 2.8065 1.9185 3.5415 -0.0341 -0.0366 -0.8265 0.0021 -0.0110 0.0089 0.1755 0.1789 0.0249 -0.0372 -0.0324 -0.0328 'X-RAY DIFFRACTION' 2 ? refined 58.6497 10.8602 29.3864 -0.0858 -0.1503 -0.1435 -0.0189 0.0168 -0.0060 3.0263 3.4411 3.5563 -0.6515 0.3198 0.4242 -0.0161 -0.0186 0.0347 -0.1384 -0.0870 0.0100 0.3859 0.0934 -0.1352 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 127 ? A 1 A 127 'X-RAY DIFFRACTION' ? 2 2 B 2 B 91 ? B 2 B 91 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 d*TREK . ? ? ? ? 'data reduction' ? ? ? 3 d*TREK . ? ? ? ? 'data scaling' ? ? ? 4 SOLVE . ? ? ? ? phasing ? ? ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 37 ? ? -125.35 -60.16 2 1 ASP A 91 ? ? 59.88 -119.85 3 1 GLU A 99 ? ? 23.30 -101.30 4 1 ASP A 110 ? ? 77.61 97.50 5 1 ASN B 5 ? ? 70.25 -1.73 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 39 ? A ASP 39 2 1 Y 1 A VAL 40 ? A VAL 40 3 1 Y 1 A GLY 41 ? A GLY 41 4 1 Y 1 A SER 42 ? A SER 42 5 1 Y 1 A GLN 43 ? A GLN 43 6 1 Y 1 A LYS 44 ? A LYS 44 7 1 Y 1 B MET 1 ? B MET 1 8 1 Y 1 B TYR 92 ? B TYR 92 9 1 Y 1 B LYS 93 ? B LYS 93 10 1 Y 1 B THR 94 ? B THR 94 11 1 Y 1 B ARG 95 ? B ARG 95 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'LEAD (II) ION' PB 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PB 1 96 1 PB PB B . D 4 HOH 1 128 7 HOH HOH A . D 4 HOH 2 129 9 HOH HOH A . D 4 HOH 3 130 10 HOH HOH A . D 4 HOH 4 131 12 HOH HOH A . D 4 HOH 5 132 13 HOH HOH A . D 4 HOH 6 133 16 HOH HOH A . D 4 HOH 7 134 18 HOH HOH A . D 4 HOH 8 135 20 HOH HOH A . D 4 HOH 9 136 21 HOH HOH A . D 4 HOH 10 137 22 HOH HOH A . D 4 HOH 11 138 24 HOH HOH A . D 4 HOH 12 139 26 HOH HOH A . D 4 HOH 13 140 27 HOH HOH A . D 4 HOH 14 141 30 HOH HOH A . D 4 HOH 15 142 33 HOH HOH A . D 4 HOH 16 143 34 HOH HOH A . D 4 HOH 17 144 35 HOH HOH A . D 4 HOH 18 145 36 HOH HOH A . D 4 HOH 19 146 37 HOH HOH A . D 4 HOH 20 147 38 HOH HOH A . D 4 HOH 21 148 42 HOH HOH A . D 4 HOH 22 149 44 HOH HOH A . D 4 HOH 23 150 46 HOH HOH A . E 4 HOH 1 97 6 HOH HOH B . E 4 HOH 2 98 8 HOH HOH B . E 4 HOH 3 99 11 HOH HOH B . E 4 HOH 4 100 14 HOH HOH B . E 4 HOH 5 101 15 HOH HOH B . E 4 HOH 6 102 17 HOH HOH B . E 4 HOH 7 103 19 HOH HOH B . E 4 HOH 8 104 23 HOH HOH B . E 4 HOH 9 105 25 HOH HOH B . E 4 HOH 10 106 28 HOH HOH B . E 4 HOH 11 107 29 HOH HOH B . E 4 HOH 12 108 31 HOH HOH B . E 4 HOH 13 109 32 HOH HOH B . E 4 HOH 14 110 39 HOH HOH B . E 4 HOH 15 111 40 HOH HOH B . E 4 HOH 16 112 41 HOH HOH B . E 4 HOH 17 113 43 HOH HOH B . E 4 HOH 18 114 45 HOH HOH B . E 4 HOH 19 115 47 HOH HOH B . #