data_2QKZ # _entry.id 2QKZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QKZ RCSB RCSB043729 WWPDB D_1000043729 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2010-01-26 _pdbx_database_PDB_obs_spr.pdb_id 2KKD _pdbx_database_PDB_obs_spr.replace_pdb_id 2QKZ _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 8RXN 'X-Ray structure of the same protein, but with native iron centre.' unspecified PDB 2QL0 'NMR structure of the ZN substituted form of the same protein.' unspecified # _pdbx_database_status.entry_id 2QKZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-07-12 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Goodfellow, B.J.' 1 'Nunes, S.G.' 2 'Volkman, B.F.' 3 'Moura, J.J.G.' 4 'Macedo, A.L.' 5 'Duarte, I.C.' 6 'Markley, J.L.' 7 'Moura, I.' 8 # _citation.id primary _citation.title ? _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Goodfellow, B.J.' 1 primary 'Nunes, S.G.' 2 primary 'Volkman, B.F.' 3 primary 'Moura, J.J.G.' 4 primary 'Macedo, A.L.' 5 primary 'Duarte, I.C.' 6 primary 'Markley, J.L.' 7 primary 'Moura, I.' 8 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Rubredoxin 5578.174 1 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Rd # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MKKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEAA _entity_poly.pdbx_seq_one_letter_code_can MKKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEAA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 LYS n 1 4 TYR n 1 5 VAL n 1 6 CYS n 1 7 THR n 1 8 VAL n 1 9 CYS n 1 10 GLY n 1 11 TYR n 1 12 GLU n 1 13 TYR n 1 14 ASP n 1 15 PRO n 1 16 ALA n 1 17 GLU n 1 18 GLY n 1 19 ASP n 1 20 PRO n 1 21 ASP n 1 22 ASN n 1 23 GLY n 1 24 VAL n 1 25 LYS n 1 26 PRO n 1 27 GLY n 1 28 THR n 1 29 SER n 1 30 PHE n 1 31 ASP n 1 32 ASP n 1 33 LEU n 1 34 PRO n 1 35 ALA n 1 36 ASP n 1 37 TRP n 1 38 VAL n 1 39 CYS n 1 40 PRO n 1 41 VAL n 1 42 CYS n 1 43 GLY n 1 44 ALA n 1 45 PRO n 1 46 LYS n 1 47 SER n 1 48 GLU n 1 49 PHE n 1 50 GLU n 1 51 ALA n 1 52 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene rub _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Hildenborough/ATCC 29579/NCIMB 8303' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Desulfovibrio vulgaris' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RUBR_DESVH _struct_ref.pdbx_db_accession P00269 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MKKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEFEAA _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QKZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 52 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00269 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 52 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 52 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 2 1 '2D NOESY' 3 2 1 '2D TOCSY' 4 1 1 '15N-1H HSQC' 5 1 1 3D_15N-separated_TOCSY 6 3 1 '1D NOE difference with super-WEFT' 7 3 1 '2D NOESY with fast recycle' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '2mM Ni-Rubredoxin U-15N; 50mM phosphate buffer' '95% H2O/5% D2O' 2 '2mM Ni-Rubredoxin unlabeled; 50mM phosphate buffer' '95% H2O/5% D2O' 3 '2mM Ni-Rubredoxin unlabeled; 50mM phosphate buffer' '100% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DRX 500 2 ? Bruker DRX 750 3 ? Bruker DRX 600 4 ? Bruker DRX 400 # _pdbx_nmr_refine.entry_id 2QKZ _pdbx_nmr_refine.method 'Automated methods along with torsion angle dynamics were used for backbone chemical shift assignment and iterative noe refinement.' _pdbx_nmr_refine.details ;a total of 529 constraints (161 intra, 95 short, 96 medium, 177 long). Hydrogen bonds distance constraints: 16. A total of 147 pseudocontact shifts restraints were also used for structure refinement. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2QKZ _pdbx_nmr_ensemble.conformers_calculated_total_number 500 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2QKZ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal CYANA 2.1 'structure solution' 'Guntert P.' 1 NMRPipe 2004 processing 'Delagio,F. et al.' 2 XWINNMR 3.5 collection Bruker 3 SPARKY 3.112 'data analysis' 'T.D. Goddard, D.G. Kneller' 4 FANTASIAN 2.0 'structure solution' 'A.Romagnoli, G.Gori-Savellini' 5 PSEUDYANA 1.5 'structure solution' 'Banci L, Bertini I, Cremonini MA, Gori-Savellini G, Luchinat C, Wurthrich K, Guntert PG' 6 PSEUDYANA 1.5 refinement 'Banci L, Bertini I, Cremonini MA, Gori-Savellini G, Luchinat C, Wurthrich K, Guntert PG' 7 # _exptl.method 'SOLUTION NMR' _exptl.entry_id 2QKZ _exptl.crystals_number ? # _struct.entry_id 2QKZ _struct.title 'Nickel-substituted Rubredoxin from Desulfovibrio Vulgaris' _struct.pdbx_descriptor Rubredoxin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QKZ _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text '[Fe-4S], Electron Transport, Iron, Metal-binding' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 29 ? LEU A 33 ? SER A 29 LEU A 33 5 ? 5 HELX_P HELX_P2 2 PRO A 45 ? SER A 47 ? PRO A 45 SER A 47 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A CYS 6 SG ? ? ? 1_555 B NI . NI ? ? A CYS 6 A NI 53 1_555 ? ? ? ? ? ? ? 2.444 ? metalc2 metalc ? ? A CYS 9 SG ? ? ? 1_555 B NI . NI ? ? A CYS 9 A NI 53 1_555 ? ? ? ? ? ? ? 2.625 ? metalc3 metalc ? ? A CYS 39 SG ? ? ? 1_555 B NI . NI ? ? A CYS 39 A NI 53 1_555 ? ? ? ? ? ? ? 2.021 ? metalc4 metalc ? ? A CYS 42 SG ? ? ? 1_555 B NI . NI ? ? A CYS 42 A NI 53 1_555 ? ? ? ? ? ? ? 2.599 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 5 ? CYS A 6 ? VAL A 5 CYS A 6 A 2 PHE A 49 ? GLU A 50 ? PHE A 49 GLU A 50 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 5 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 5 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id GLU _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 50 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLU _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 50 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE NI A 53' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 CYS A 6 ? CYS A 6 . ? 1_555 ? 2 AC1 3 CYS A 9 ? CYS A 9 . ? 1_555 ? 3 AC1 3 TYR A 11 ? TYR A 11 . ? 1_555 ? # _atom_sites.entry_id 2QKZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N NI O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 PRO 34 34 34 PRO PRO A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 TRP 37 37 37 TRP TRP A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ALA 52 52 52 ALA ALA A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NI _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 53 _pdbx_nonpoly_scheme.auth_seq_num 53 _pdbx_nonpoly_scheme.pdb_mon_id NI _pdbx_nonpoly_scheme.auth_mon_id NI _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 6 ? A CYS 6 ? 1_555 NI ? B NI . ? A NI 53 ? 1_555 SG ? A CYS 9 ? A CYS 9 ? 1_555 103.8 ? 2 SG ? A CYS 6 ? A CYS 6 ? 1_555 NI ? B NI . ? A NI 53 ? 1_555 SG ? A CYS 39 ? A CYS 39 ? 1_555 95.3 ? 3 SG ? A CYS 9 ? A CYS 9 ? 1_555 NI ? B NI . ? A NI 53 ? 1_555 SG ? A CYS 39 ? A CYS 39 ? 1_555 125.2 ? 4 SG ? A CYS 6 ? A CYS 6 ? 1_555 NI ? B NI . ? A NI 53 ? 1_555 SG ? A CYS 42 ? A CYS 42 ? 1_555 83.8 ? 5 SG ? A CYS 9 ? A CYS 9 ? 1_555 NI ? B NI . ? A NI 53 ? 1_555 SG ? A CYS 42 ? A CYS 42 ? 1_555 110.3 ? 6 SG ? A CYS 39 ? A CYS 39 ? 1_555 NI ? B NI . ? A NI 53 ? 1_555 SG ? A CYS 42 ? A CYS 42 ? 1_555 122.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-08 2 'Structure model' 1 1 2010-01-26 3 'Structure model' 1 2 2011-07-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 3 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A PRO 45 ? ? H A GLU 48 ? ? 1.45 2 1 O A ASP 19 ? ? H A VAL 24 ? ? 1.53 3 2 O A PRO 45 ? ? H A GLU 48 ? ? 1.57 4 2 O A SER 29 ? ? H A ASP 32 ? ? 1.58 5 3 O A ASP 19 ? ? H A VAL 24 ? ? 1.52 6 4 O A SER 29 ? ? H A ASP 32 ? ? 1.56 7 5 O A ASP 19 ? ? H A VAL 24 ? ? 1.49 8 6 O A PRO 45 ? ? H A GLU 48 ? ? 1.41 9 6 O A SER 29 ? ? H A ASP 32 ? ? 1.56 10 7 O A ASP 19 ? ? H A VAL 24 ? ? 1.49 11 7 O A PRO 45 ? ? H A GLU 48 ? ? 1.53 12 7 O A SER 29 ? ? H A ASP 32 ? ? 1.58 13 8 O A PRO 45 ? ? H A GLU 48 ? ? 1.57 14 8 O A CYS 6 ? ? H A CYS 9 ? ? 1.60 15 9 O A SER 29 ? ? H A ASP 32 ? ? 1.57 16 10 O A SER 29 ? ? H A ASP 32 ? ? 1.56 17 11 O A PRO 45 ? ? H A GLU 48 ? ? 1.42 18 11 O A LYS 25 ? ? HG1 A THR 28 ? ? 1.54 19 12 O A LYS 25 ? ? HG1 A THR 28 ? ? 1.45 20 12 O A SER 29 ? ? H A ASP 32 ? ? 1.51 21 13 O A ASP 19 ? ? H A VAL 24 ? ? 1.50 22 13 O A SER 29 ? ? H A ASP 32 ? ? 1.52 23 14 O A PRO 45 ? ? H A GLU 48 ? ? 1.48 24 14 O A SER 29 ? ? H A ASP 32 ? ? 1.57 25 15 O A PRO 45 ? ? H A GLU 48 ? ? 1.48 26 15 O A PRO 20 ? ? H A GLY 23 ? ? 1.55 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 4 ? ? -107.39 -165.02 2 1 THR A 7 ? ? -86.77 38.28 3 1 VAL A 8 ? ? -140.40 11.30 4 1 CYS A 9 ? ? 179.55 -38.67 5 1 TYR A 11 ? ? -78.15 -166.81 6 1 ASP A 19 ? ? 178.68 109.52 7 1 ASP A 21 ? ? -38.21 -36.68 8 1 CYS A 39 ? ? -36.69 114.69 9 1 VAL A 41 ? ? -160.97 -45.86 10 2 LYS A 2 ? ? 42.87 -133.82 11 2 LYS A 3 ? ? 64.80 119.65 12 2 TYR A 4 ? ? -113.77 -161.63 13 2 THR A 7 ? ? -37.44 -31.70 14 2 CYS A 9 ? ? 82.60 -52.22 15 2 GLU A 17 ? ? -123.16 -58.39 16 2 ASP A 19 ? ? 175.79 118.23 17 2 VAL A 38 ? ? 41.62 -127.89 18 2 VAL A 41 ? ? -122.53 -53.23 19 2 CYS A 42 ? ? -97.16 -159.87 20 2 ALA A 44 ? ? -36.80 130.98 21 3 LYS A 2 ? ? -161.20 -161.85 22 3 LYS A 3 ? ? 66.85 124.06 23 3 TYR A 4 ? ? -111.05 -164.70 24 3 VAL A 8 ? ? -156.10 -55.75 25 3 ASP A 19 ? ? -179.55 106.50 26 3 ASP A 21 ? ? -38.27 -37.09 27 3 ASN A 22 ? ? -105.12 -63.27 28 3 VAL A 38 ? ? 44.36 -124.05 29 3 ALA A 44 ? ? -30.60 126.11 30 4 LYS A 2 ? ? 64.69 -148.95 31 4 LYS A 3 ? ? 42.47 94.76 32 4 TYR A 4 ? ? -79.51 -166.13 33 4 THR A 7 ? ? 48.12 23.33 34 4 VAL A 8 ? ? -144.81 -58.53 35 4 GLU A 17 ? ? -123.24 -60.77 36 4 ASP A 19 ? ? 177.74 106.50 37 4 VAL A 38 ? ? 44.70 -128.94 38 4 CYS A 42 ? ? -108.30 -165.31 39 4 ALA A 44 ? ? -32.16 128.38 40 5 LYS A 2 ? ? 173.76 144.06 41 5 THR A 7 ? ? -97.32 46.41 42 5 VAL A 8 ? ? -149.54 -45.52 43 5 ASP A 19 ? ? 179.61 107.33 44 5 ASP A 21 ? ? -38.29 -38.73 45 5 VAL A 38 ? ? 44.72 -137.83 46 5 VAL A 41 ? ? -145.77 20.86 47 5 ALA A 44 ? ? -23.83 117.92 48 6 LYS A 2 ? ? 60.33 153.38 49 6 LYS A 3 ? ? 47.13 94.48 50 6 TYR A 4 ? ? -116.95 -163.36 51 6 VAL A 8 ? ? -130.74 -48.91 52 6 ASP A 19 ? ? 178.74 105.55 53 6 CYS A 39 ? ? -38.45 118.10 54 6 VAL A 41 ? ? -152.06 -50.84 55 7 LYS A 2 ? ? 59.83 -168.68 56 7 LYS A 3 ? ? 59.40 110.78 57 7 TYR A 4 ? ? -112.69 -162.08 58 7 THR A 7 ? ? -85.42 38.78 59 7 VAL A 8 ? ? -144.59 -48.05 60 7 TYR A 11 ? ? -106.82 -162.01 61 7 ASP A 19 ? ? 177.68 106.97 62 7 VAL A 38 ? ? 48.60 -142.33 63 7 VAL A 41 ? ? -141.55 13.10 64 7 ALA A 44 ? ? -28.23 116.52 65 8 LYS A 2 ? ? 56.97 -152.33 66 8 LYS A 3 ? ? 80.35 98.78 67 8 TYR A 11 ? ? -67.04 -168.56 68 8 GLU A 17 ? ? -120.70 -54.59 69 8 ASP A 19 ? ? 177.51 107.16 70 8 ASP A 21 ? ? -37.93 -38.37 71 8 VAL A 38 ? ? 52.57 -163.90 72 8 PRO A 40 ? ? -75.02 48.88 73 8 VAL A 41 ? ? -164.99 -42.37 74 8 CYS A 42 ? ? -105.65 -60.17 75 9 LYS A 2 ? ? -64.88 -138.99 76 9 LYS A 3 ? ? 64.03 123.24 77 9 THR A 7 ? ? -88.70 42.38 78 9 VAL A 8 ? ? -147.67 -43.97 79 9 TYR A 11 ? ? -49.17 -179.89 80 9 GLU A 17 ? ? -123.70 -51.57 81 9 ASP A 19 ? ? 175.78 107.08 82 9 ASP A 21 ? ? -35.13 -38.58 83 9 VAL A 38 ? ? 46.14 -129.53 84 9 CYS A 42 ? ? -101.56 -156.11 85 9 ALA A 44 ? ? -30.94 128.27 86 10 LYS A 2 ? ? -176.91 137.43 87 10 LYS A 3 ? ? 48.98 97.93 88 10 TYR A 4 ? ? -111.56 -167.88 89 10 VAL A 8 ? ? -144.01 -53.01 90 10 GLU A 17 ? ? -126.98 -64.51 91 10 ASP A 19 ? ? 176.29 120.68 92 10 LEU A 33 ? ? -42.11 154.16 93 10 VAL A 38 ? ? 38.32 -132.24 94 10 CYS A 42 ? ? -115.84 -166.92 95 10 ALA A 44 ? ? -30.81 123.25 96 11 LYS A 3 ? ? 59.15 116.17 97 11 THR A 7 ? ? -32.90 -39.44 98 11 GLU A 17 ? ? -121.12 -60.00 99 11 ASP A 19 ? ? 175.85 120.57 100 11 THR A 28 ? ? -96.16 -115.74 101 11 SER A 29 ? ? 165.98 133.29 102 11 CYS A 39 ? ? -38.19 117.11 103 11 VAL A 41 ? ? -151.96 -49.14 104 12 LYS A 2 ? ? -38.66 149.68 105 12 THR A 7 ? ? -86.33 40.03 106 12 VAL A 8 ? ? -143.69 -43.76 107 12 ASP A 19 ? ? 178.47 120.26 108 12 LEU A 33 ? ? -43.32 157.46 109 12 VAL A 38 ? ? 46.08 -129.36 110 12 CYS A 42 ? ? -107.20 -169.10 111 12 ALA A 44 ? ? -31.94 129.18 112 13 TYR A 4 ? ? -113.42 -164.84 113 13 THR A 7 ? ? -88.54 38.01 114 13 VAL A 8 ? ? -145.92 -48.89 115 13 GLU A 17 ? ? -121.87 -58.79 116 13 ASP A 19 ? ? -176.74 108.68 117 13 VAL A 38 ? ? 47.21 -132.87 118 13 CYS A 42 ? ? -103.42 -162.79 119 13 ALA A 44 ? ? -33.96 129.28 120 14 TYR A 4 ? ? -92.03 -158.85 121 14 THR A 7 ? ? -37.83 -35.77 122 14 CYS A 9 ? ? 91.35 -42.69 123 14 ASP A 19 ? ? 176.18 108.31 124 14 ASP A 21 ? ? -34.33 -37.73 125 14 VAL A 38 ? ? 52.91 -168.65 126 14 VAL A 41 ? ? -157.94 -45.23 127 15 LYS A 2 ? ? -175.31 146.67 128 15 TYR A 4 ? ? -109.56 -163.31 129 15 THR A 7 ? ? -94.13 41.07 130 15 VAL A 8 ? ? -139.68 -45.12 131 15 GLU A 17 ? ? -121.46 -65.29 132 15 ASP A 19 ? ? 175.53 120.28 133 15 LEU A 33 ? ? -39.67 154.06 134 15 VAL A 38 ? ? 48.58 -142.66 135 15 ALA A 44 ? ? -30.95 123.58 136 15 GLU A 48 ? ? -98.73 30.42 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'NICKEL (II) ION' _pdbx_entity_nonpoly.comp_id NI #