data_2QL1 # _entry.id 2QL1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2QL1 pdb_00002ql1 10.2210/pdb2ql1/pdb RCSB RCSB043731 ? ? WWPDB D_1000043731 ? ? # _pdbx_database_status.entry_id 2QL1 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-07-12 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Oganesyan, V.' 1 'Wu, H.' 2 ;Dall'Acqua, W.F. ; 3 # _citation.id primary _citation.title 'Structural characterization of a mutated, ADCC-enhanced human Fc fragment' _citation.journal_abbrev Mol.Immunol. _citation.journal_volume 45 _citation.page_first 1872 _citation.page_last 1882 _citation.year 2008 _citation.journal_id_ASTM MOIMD5 _citation.country UK _citation.journal_id_ISSN 0161-5890 _citation.journal_id_CSD 0921 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18078997 _citation.pdbx_database_id_DOI 10.1016/j.molimm.2007.10.042 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Oganesyan, V.' 1 ? primary 'Damschroder, M.M.' 2 ? primary 'Leach, W.' 3 ? primary 'Wu, H.' 4 ? primary ;Dall'Acqua, W.F. ; 5 ? # _cell.entry_id 2QL1 _cell.length_a 49.869 _cell.length_b 147.492 _cell.length_c 74.315 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QL1 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 20 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'IGHM protein' 25454.795 1 ? ? 'Antibody Fc fragment' ? 2 branched man ;beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; 1625.490 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 4 water nat water 18.015 24 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;THTCPPCPAPELLGGPDVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV VSVLTVLHQDWLNGKEYKCKVSNKALPLPEEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWE SNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK ; _entity_poly.pdbx_seq_one_letter_code_can ;THTCPPCPAPELLGGPDVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV VSVLTVLHQDWLNGKEYKCKVSNKALPLPEEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWE SNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 HIS n 1 3 THR n 1 4 CYS n 1 5 PRO n 1 6 PRO n 1 7 CYS n 1 8 PRO n 1 9 ALA n 1 10 PRO n 1 11 GLU n 1 12 LEU n 1 13 LEU n 1 14 GLY n 1 15 GLY n 1 16 PRO n 1 17 ASP n 1 18 VAL n 1 19 PHE n 1 20 LEU n 1 21 PHE n 1 22 PRO n 1 23 PRO n 1 24 LYS n 1 25 PRO n 1 26 LYS n 1 27 ASP n 1 28 THR n 1 29 LEU n 1 30 MET n 1 31 ILE n 1 32 SER n 1 33 ARG n 1 34 THR n 1 35 PRO n 1 36 GLU n 1 37 VAL n 1 38 THR n 1 39 CYS n 1 40 VAL n 1 41 VAL n 1 42 VAL n 1 43 ASP n 1 44 VAL n 1 45 SER n 1 46 HIS n 1 47 GLU n 1 48 ASP n 1 49 PRO n 1 50 GLU n 1 51 VAL n 1 52 LYS n 1 53 PHE n 1 54 ASN n 1 55 TRP n 1 56 TYR n 1 57 VAL n 1 58 ASP n 1 59 GLY n 1 60 VAL n 1 61 GLU n 1 62 VAL n 1 63 HIS n 1 64 ASN n 1 65 ALA n 1 66 LYS n 1 67 THR n 1 68 LYS n 1 69 PRO n 1 70 ARG n 1 71 GLU n 1 72 GLU n 1 73 GLN n 1 74 TYR n 1 75 ASN n 1 76 SER n 1 77 THR n 1 78 TYR n 1 79 ARG n 1 80 VAL n 1 81 VAL n 1 82 SER n 1 83 VAL n 1 84 LEU n 1 85 THR n 1 86 VAL n 1 87 LEU n 1 88 HIS n 1 89 GLN n 1 90 ASP n 1 91 TRP n 1 92 LEU n 1 93 ASN n 1 94 GLY n 1 95 LYS n 1 96 GLU n 1 97 TYR n 1 98 LYS n 1 99 CYS n 1 100 LYS n 1 101 VAL n 1 102 SER n 1 103 ASN n 1 104 LYS n 1 105 ALA n 1 106 LEU n 1 107 PRO n 1 108 LEU n 1 109 PRO n 1 110 GLU n 1 111 GLU n 1 112 LYS n 1 113 THR n 1 114 ILE n 1 115 SER n 1 116 LYS n 1 117 ALA n 1 118 LYS n 1 119 GLY n 1 120 GLN n 1 121 PRO n 1 122 ARG n 1 123 GLU n 1 124 PRO n 1 125 GLN n 1 126 VAL n 1 127 TYR n 1 128 THR n 1 129 LEU n 1 130 PRO n 1 131 PRO n 1 132 SER n 1 133 ARG n 1 134 GLU n 1 135 GLU n 1 136 MET n 1 137 THR n 1 138 LYS n 1 139 ASN n 1 140 GLN n 1 141 VAL n 1 142 SER n 1 143 LEU n 1 144 THR n 1 145 CYS n 1 146 LEU n 1 147 VAL n 1 148 LYS n 1 149 GLY n 1 150 PHE n 1 151 TYR n 1 152 PRO n 1 153 SER n 1 154 ASP n 1 155 ILE n 1 156 ALA n 1 157 VAL n 1 158 GLU n 1 159 TRP n 1 160 GLU n 1 161 SER n 1 162 ASN n 1 163 GLY n 1 164 GLN n 1 165 PRO n 1 166 GLU n 1 167 ASN n 1 168 ASN n 1 169 TYR n 1 170 LYS n 1 171 THR n 1 172 THR n 1 173 PRO n 1 174 PRO n 1 175 VAL n 1 176 LEU n 1 177 ASP n 1 178 SER n 1 179 ASP n 1 180 GLY n 1 181 SER n 1 182 PHE n 1 183 PHE n 1 184 LEU n 1 185 TYR n 1 186 SER n 1 187 LYS n 1 188 LEU n 1 189 THR n 1 190 VAL n 1 191 ASP n 1 192 LYS n 1 193 SER n 1 194 ARG n 1 195 TRP n 1 196 GLN n 1 197 GLN n 1 198 GLY n 1 199 ASN n 1 200 VAL n 1 201 PHE n 1 202 SER n 1 203 CYS n 1 204 SER n 1 205 VAL n 1 206 MET n 1 207 HIS n 1 208 GLU n 1 209 ALA n 1 210 LEU n 1 211 HIS n 1 212 ASN n 1 213 HIS n 1 214 TYR n 1 215 THR n 1 216 GLN n 1 217 LYS n 1 218 SER n 1 219 LEU n 1 220 SER n 1 221 LEU n 1 222 SER n 1 223 PRO n 1 224 GLY n 1 225 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene IGHM _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'HEK 293' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line mammalian _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type 'MAMMALIAN EXPRESSION VECTOR' _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6PJF1_HUMAN _struct_ref.pdbx_db_accession Q6PJF1 _struct_ref.pdbx_align_begin 256 _struct_ref.pdbx_seq_one_letter_code ;THTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV VSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWE SNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QL1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 225 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6PJF1 _struct_ref_seq.db_align_beg 256 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 480 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 223 _struct_ref_seq.pdbx_auth_seq_align_end 447 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QL1 ASP A 17 ? UNP Q6PJF1 SER 272 'engineered mutation' 239 1 1 2QL1 LEU A 108 ? UNP Q6PJF1 ALA 363 'engineered mutation' 330 2 1 2QL1 GLU A 110 ? UNP Q6PJF1 ILE 365 'engineered mutation' 332 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2QL1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_percent_sol 54.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '8% PEG 3350, 200 mM Zn Acetate, 5% Glycerol, 0.1 M Imidazole -Malate buffer, pH 8.0, VAPOR DIFFUSION, temperature 298.0K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 105.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2007-03-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2QL1 _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.53 _reflns.d_resolution_low 47.25 _reflns.number_all 8675 _reflns.number_obs 8675 _reflns.percent_possible_obs 92.6 _reflns.pdbx_Rmerge_I_obs 0.159 _reflns.pdbx_Rsym_value 0.159 _reflns.pdbx_netI_over_sigmaI 7.5 _reflns.B_iso_Wilson_estimate 36 _reflns.pdbx_redundancy 3.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.53 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.614 _reflns_shell.pdbx_Rsym_value 0.614 _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 924 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QL1 _refine.ls_number_reflns_obs 8264 _refine.ls_number_reflns_all 8675 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.25 _refine.ls_d_res_high 2.534 _refine.ls_percent_reflns_obs 91.42 _refine.ls_R_factor_obs 0.23506 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23215 _refine.ls_R_factor_R_free 0.29287 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 398 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.895 _refine.correlation_coeff_Fo_to_Fc_free 0.859 _refine.B_iso_mean 36.253 _refine.aniso_B[1][1] -2.66 _refine.aniso_B[2][2] -2.69 _refine.aniso_B[3][3] 5.34 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2DTQ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.824 _refine.pdbx_overall_ESU_R_Free 0.364 _refine.overall_SU_ML 0.312 _refine.overall_SU_B 27.075 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1675 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 114 _refine_hist.number_atoms_solvent 24 _refine_hist.number_atoms_total 1813 _refine_hist.d_res_high 2.534 _refine_hist.d_res_low 47.25 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1842 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.880 2.032 ? 2523 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.564 5.000 ? 208 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.681 25.128 ? 78 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.156 15.000 ? 294 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 22.242 15.000 ? 6 'X-RAY DIFFRACTION' ? r_chiral_restr 0.113 0.200 ? 300 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1327 'X-RAY DIFFRACTION' ? r_nbd_refined 0.238 0.200 ? 705 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.322 0.200 ? 1213 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.200 0.200 ? 57 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.133 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.224 0.200 ? 56 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.170 0.200 ? 8 'X-RAY DIFFRACTION' ? r_mcbond_it 0.740 1.500 ? 1089 'X-RAY DIFFRACTION' ? r_mcangle_it 1.136 2.000 ? 1728 'X-RAY DIFFRACTION' ? r_scbond_it 1.864 3.000 ? 856 'X-RAY DIFFRACTION' ? r_scangle_it 3.030 4.500 ? 795 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.534 _refine_ls_shell.d_res_low 2.600 _refine_ls_shell.number_reflns_R_work 528 _refine_ls_shell.R_factor_R_work 0.317 _refine_ls_shell.percent_reflns_obs 82.23 _refine_ls_shell.R_factor_R_free 0.502 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 32 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 924 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QL1 _struct.title 'Structural Characterization of a Mutated, ADCC-Enhanced Human Fc Fragment' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QL1 _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'antibody, ADCC, Fc fragment, mutation, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details 'The second part of the biological assembly is generated by the two fold axis: -x, y, -z+1/2' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 24 ? MET A 30 ? LYS A 246 MET A 252 1 ? 7 HELX_P HELX_P2 2 LEU A 87 ? ASN A 93 ? LEU A 309 ASN A 315 1 ? 7 HELX_P HELX_P3 3 ARG A 133 ? LYS A 138 ? ARG A 355 LYS A 360 5 ? 6 HELX_P HELX_P4 4 LYS A 192 ? GLY A 198 ? LYS A 414 GLY A 420 1 ? 7 HELX_P HELX_P5 5 LEU A 210 ? ASN A 212 ? LEU A 432 ASN A 434 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 39 SG ? ? ? 1_555 A CYS 99 SG ? ? A CYS 261 A CYS 321 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf2 disulf ? ? A CYS 145 SG ? ? ? 1_555 A CYS 203 SG ? ? A CYS 367 A CYS 425 1_555 ? ? ? ? ? ? ? 2.078 ? ? covale1 covale one ? A ASN 75 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 297 C NAG 1 1_555 ? ? ? ? ? ? ? 1.450 ? N-Glycosylation covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale3 covale both ? B NAG . O6 ? ? ? 1_555 B FUC . C1 ? ? C NAG 1 C FUC 9 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale4 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? C NAG 2 C BMA 3 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale5 covale both ? B BMA . O6 ? ? ? 1_555 B MAN . C1 ? ? C BMA 3 C MAN 4 1_555 ? ? ? ? ? ? ? 1.415 ? ? covale6 covale both ? B BMA . O3 ? ? ? 1_555 B MAN . C1 ? ? C BMA 3 C MAN 7 1_555 ? ? ? ? ? ? ? 1.451 ? ? covale7 covale both ? B MAN . O2 ? ? ? 1_555 B NAG . C1 ? ? C MAN 4 C NAG 5 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale8 covale both ? B NAG . O4 ? ? ? 1_555 B GAL . C1 ? ? C NAG 5 C GAL 6 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale9 covale both ? B MAN . O2 ? ? ? 1_555 B NAG . C1 ? ? C MAN 7 C NAG 8 1_555 ? ? ? ? ? ? ? 1.462 ? ? metalc1 metalc ? ? C ZN . ZN ? ? ? 1_555 A HIS 88 NE2 ? ? A ZN 1 A HIS 310 1_555 ? ? ? ? ? ? ? 1.903 ? ? metalc2 metalc ? ? C ZN . ZN ? ? ? 1_555 A HIS 213 NE2 ? ? A ZN 1 A HIS 435 1_555 ? ? ? ? ? ? ? 2.024 ? ? metalc3 metalc ? ? D ZN . ZN ? ? ? 1_555 A HIS 211 NE2 ? ? A ZN 2 A HIS 433 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc4 metalc ? ? E ZN . ZN ? ? ? 1_555 A GLU 96 OE2 ? ? A ZN 3 A GLU 318 1_555 ? ? ? ? ? ? ? 2.250 ? ? metalc5 metalc ? ? E ZN . ZN ? ? ? 1_555 G HOH . O ? ? A ZN 3 A HOH 465 1_555 ? ? ? ? ? ? ? 1.856 ? ? metalc6 metalc ? ? F ZN . ZN ? ? ? 1_555 A GLU 123 OE1 ? ? A ZN 4 A GLU 345 1_555 ? ? ? ? ? ? ? 2.266 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 14 A . ? GLY 236 A GLY 15 A ? GLY 237 A 1 4.98 2 TYR 151 A . ? TYR 373 A PRO 152 A ? PRO 374 A 1 0.47 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? D ? 4 ? E ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 17 ? PHE A 21 ? ASP A 239 PHE A 243 A 2 GLU A 36 ? SER A 45 ? GLU A 258 SER A 267 A 3 THR A 77 ? THR A 85 ? THR A 299 THR A 307 A 4 LYS A 66 ? THR A 67 ? LYS A 288 THR A 289 B 1 VAL A 60 ? VAL A 62 ? VAL A 282 VAL A 284 B 2 LYS A 52 ? VAL A 57 ? LYS A 274 VAL A 279 B 3 TYR A 97 ? SER A 102 ? TYR A 319 SER A 324 B 4 GLU A 110 ? ILE A 114 ? GLU A 332 ILE A 336 C 1 GLN A 125 ? LEU A 129 ? GLN A 347 LEU A 351 C 2 GLN A 140 ? PHE A 150 ? GLN A 362 PHE A 372 C 3 PHE A 182 ? ASP A 191 ? PHE A 404 ASP A 413 C 4 TYR A 169 ? THR A 171 ? TYR A 391 THR A 393 D 1 GLN A 125 ? LEU A 129 ? GLN A 347 LEU A 351 D 2 GLN A 140 ? PHE A 150 ? GLN A 362 PHE A 372 D 3 PHE A 182 ? ASP A 191 ? PHE A 404 ASP A 413 D 4 VAL A 175 ? LEU A 176 ? VAL A 397 LEU A 398 E 1 ALA A 156 ? GLU A 160 ? ALA A 378 GLU A 382 E 2 PHE A 201 ? MET A 206 ? PHE A 423 MET A 428 E 3 TYR A 214 ? LEU A 219 ? TYR A 436 LEU A 441 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 19 ? N PHE A 241 O VAL A 40 ? O VAL A 262 A 2 3 N CYS A 39 ? N CYS A 261 O SER A 82 ? O SER A 304 A 3 4 O VAL A 83 ? O VAL A 305 N LYS A 66 ? N LYS A 288 B 1 2 O VAL A 62 ? O VAL A 284 N TRP A 55 ? N TRP A 277 B 2 3 N ASN A 54 ? N ASN A 276 O LYS A 100 ? O LYS A 322 B 3 4 N VAL A 101 ? N VAL A 323 O GLU A 110 ? O GLU A 332 C 1 2 N LEU A 129 ? N LEU A 351 O THR A 144 ? O THR A 366 C 2 3 N LEU A 143 ? N LEU A 365 O LEU A 188 ? O LEU A 410 C 3 4 O LYS A 187 ? O LYS A 409 N LYS A 170 ? N LYS A 392 D 1 2 N LEU A 129 ? N LEU A 351 O THR A 144 ? O THR A 366 D 2 3 N LEU A 143 ? N LEU A 365 O LEU A 188 ? O LEU A 410 D 3 4 O PHE A 183 ? O PHE A 405 N VAL A 175 ? N VAL A 397 E 1 2 N ALA A 156 ? N ALA A 378 O MET A 206 ? O MET A 428 E 2 3 N PHE A 201 ? N PHE A 423 O LEU A 219 ? O LEU A 441 # _atom_sites.entry_id 2QL1 _atom_sites.fract_transf_matrix[1][1] 0.020053 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006780 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013456 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _database_PDB_caveat.text 'FUC C 9 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 223 ? ? ? A . n A 1 2 HIS 2 224 ? ? ? A . n A 1 3 THR 3 225 ? ? ? A . n A 1 4 CYS 4 226 ? ? ? A . n A 1 5 PRO 5 227 ? ? ? A . n A 1 6 PRO 6 228 ? ? ? A . n A 1 7 CYS 7 229 ? ? ? A . n A 1 8 PRO 8 230 ? ? ? A . n A 1 9 ALA 9 231 ? ? ? A . n A 1 10 PRO 10 232 ? ? ? A . n A 1 11 GLU 11 233 ? ? ? A . n A 1 12 LEU 12 234 ? ? ? A . n A 1 13 LEU 13 235 ? ? ? A . n A 1 14 GLY 14 236 236 GLY GLY A . n A 1 15 GLY 15 237 237 GLY GLY A . n A 1 16 PRO 16 238 238 PRO PRO A . n A 1 17 ASP 17 239 239 ASP ASP A . n A 1 18 VAL 18 240 240 VAL VAL A . n A 1 19 PHE 19 241 241 PHE PHE A . n A 1 20 LEU 20 242 242 LEU LEU A . n A 1 21 PHE 21 243 243 PHE PHE A . n A 1 22 PRO 22 244 244 PRO PRO A . n A 1 23 PRO 23 245 245 PRO PRO A . n A 1 24 LYS 24 246 246 LYS LYS A . n A 1 25 PRO 25 247 247 PRO PRO A . n A 1 26 LYS 26 248 248 LYS LYS A . n A 1 27 ASP 27 249 249 ASP ASP A . n A 1 28 THR 28 250 250 THR THR A . n A 1 29 LEU 29 251 251 LEU LEU A . n A 1 30 MET 30 252 252 MET MET A . n A 1 31 ILE 31 253 253 ILE ILE A . n A 1 32 SER 32 254 254 SER SER A . n A 1 33 ARG 33 255 255 ARG ARG A . n A 1 34 THR 34 256 256 THR THR A . n A 1 35 PRO 35 257 257 PRO PRO A . n A 1 36 GLU 36 258 258 GLU GLU A . n A 1 37 VAL 37 259 259 VAL VAL A . n A 1 38 THR 38 260 260 THR THR A . n A 1 39 CYS 39 261 261 CYS CYS A . n A 1 40 VAL 40 262 262 VAL VAL A . n A 1 41 VAL 41 263 263 VAL VAL A . n A 1 42 VAL 42 264 264 VAL VAL A . n A 1 43 ASP 43 265 265 ASP ASP A . n A 1 44 VAL 44 266 266 VAL VAL A . n A 1 45 SER 45 267 267 SER SER A . n A 1 46 HIS 46 268 268 HIS HIS A . n A 1 47 GLU 47 269 269 GLU GLU A . n A 1 48 ASP 48 270 270 ASP ASP A . n A 1 49 PRO 49 271 271 PRO PRO A . n A 1 50 GLU 50 272 272 GLU GLU A . n A 1 51 VAL 51 273 273 VAL VAL A . n A 1 52 LYS 52 274 274 LYS LYS A . n A 1 53 PHE 53 275 275 PHE PHE A . n A 1 54 ASN 54 276 276 ASN ASN A . n A 1 55 TRP 55 277 277 TRP TRP A . n A 1 56 TYR 56 278 278 TYR TYR A . n A 1 57 VAL 57 279 279 VAL VAL A . n A 1 58 ASP 58 280 280 ASP ASP A . n A 1 59 GLY 59 281 281 GLY GLY A . n A 1 60 VAL 60 282 282 VAL VAL A . n A 1 61 GLU 61 283 283 GLU GLU A . n A 1 62 VAL 62 284 284 VAL VAL A . n A 1 63 HIS 63 285 285 HIS HIS A . n A 1 64 ASN 64 286 286 ASN ASN A . n A 1 65 ALA 65 287 287 ALA ALA A . n A 1 66 LYS 66 288 288 LYS LYS A . n A 1 67 THR 67 289 289 THR THR A . n A 1 68 LYS 68 290 290 LYS LYS A . n A 1 69 PRO 69 291 291 PRO PRO A . n A 1 70 ARG 70 292 292 ARG ARG A . n A 1 71 GLU 71 293 293 GLU GLU A . n A 1 72 GLU 72 294 294 GLU GLU A . n A 1 73 GLN 73 295 295 GLN GLN A . n A 1 74 TYR 74 296 296 TYR TYR A . n A 1 75 ASN 75 297 297 ASN ASN A . n A 1 76 SER 76 298 298 SER SER A . n A 1 77 THR 77 299 299 THR THR A . n A 1 78 TYR 78 300 300 TYR TYR A . n A 1 79 ARG 79 301 301 ARG ARG A . n A 1 80 VAL 80 302 302 VAL VAL A . n A 1 81 VAL 81 303 303 VAL VAL A . n A 1 82 SER 82 304 304 SER SER A . n A 1 83 VAL 83 305 305 VAL VAL A . n A 1 84 LEU 84 306 306 LEU LEU A . n A 1 85 THR 85 307 307 THR THR A . n A 1 86 VAL 86 308 308 VAL VAL A . n A 1 87 LEU 87 309 309 LEU LEU A . n A 1 88 HIS 88 310 310 HIS HIS A . n A 1 89 GLN 89 311 311 GLN GLN A . n A 1 90 ASP 90 312 312 ASP ASP A . n A 1 91 TRP 91 313 313 TRP TRP A . n A 1 92 LEU 92 314 314 LEU LEU A . n A 1 93 ASN 93 315 315 ASN ASN A . n A 1 94 GLY 94 316 316 GLY GLY A . n A 1 95 LYS 95 317 317 LYS LYS A . n A 1 96 GLU 96 318 318 GLU GLU A . n A 1 97 TYR 97 319 319 TYR TYR A . n A 1 98 LYS 98 320 320 LYS LYS A . n A 1 99 CYS 99 321 321 CYS CYS A . n A 1 100 LYS 100 322 322 LYS LYS A . n A 1 101 VAL 101 323 323 VAL VAL A . n A 1 102 SER 102 324 324 SER SER A . n A 1 103 ASN 103 325 325 ASN ASN A . n A 1 104 LYS 104 326 326 LYS LYS A . n A 1 105 ALA 105 327 327 ALA ALA A . n A 1 106 LEU 106 328 328 LEU LEU A . n A 1 107 PRO 107 329 329 PRO PRO A . n A 1 108 LEU 108 330 330 LEU LEU A . n A 1 109 PRO 109 331 331 PRO PRO A . n A 1 110 GLU 110 332 332 GLU GLU A . n A 1 111 GLU 111 333 333 GLU GLU A . n A 1 112 LYS 112 334 334 LYS LYS A . n A 1 113 THR 113 335 335 THR THR A . n A 1 114 ILE 114 336 336 ILE ILE A . n A 1 115 SER 115 337 337 SER SER A . n A 1 116 LYS 116 338 338 LYS LYS A . n A 1 117 ALA 117 339 339 ALA ALA A . n A 1 118 LYS 118 340 340 LYS LYS A . n A 1 119 GLY 119 341 341 GLY GLY A . n A 1 120 GLN 120 342 342 GLN GLN A . n A 1 121 PRO 121 343 343 PRO PRO A . n A 1 122 ARG 122 344 344 ARG ARG A . n A 1 123 GLU 123 345 345 GLU GLU A . n A 1 124 PRO 124 346 346 PRO PRO A . n A 1 125 GLN 125 347 347 GLN GLN A . n A 1 126 VAL 126 348 348 VAL VAL A . n A 1 127 TYR 127 349 349 TYR TYR A . n A 1 128 THR 128 350 350 THR THR A . n A 1 129 LEU 129 351 351 LEU LEU A . n A 1 130 PRO 130 352 352 PRO PRO A . n A 1 131 PRO 131 353 353 PRO PRO A . n A 1 132 SER 132 354 354 SER SER A . n A 1 133 ARG 133 355 355 ARG ARG A . n A 1 134 GLU 134 356 356 GLU GLU A . n A 1 135 GLU 135 357 357 GLU GLU A . n A 1 136 MET 136 358 358 MET MET A . n A 1 137 THR 137 359 359 THR THR A . n A 1 138 LYS 138 360 360 LYS LYS A . n A 1 139 ASN 139 361 361 ASN ASN A . n A 1 140 GLN 140 362 362 GLN GLN A . n A 1 141 VAL 141 363 363 VAL VAL A . n A 1 142 SER 142 364 364 SER SER A . n A 1 143 LEU 143 365 365 LEU LEU A . n A 1 144 THR 144 366 366 THR THR A . n A 1 145 CYS 145 367 367 CYS CYS A . n A 1 146 LEU 146 368 368 LEU LEU A . n A 1 147 VAL 147 369 369 VAL VAL A . n A 1 148 LYS 148 370 370 LYS LYS A . n A 1 149 GLY 149 371 371 GLY GLY A . n A 1 150 PHE 150 372 372 PHE PHE A . n A 1 151 TYR 151 373 373 TYR TYR A . n A 1 152 PRO 152 374 374 PRO PRO A . n A 1 153 SER 153 375 375 SER SER A . n A 1 154 ASP 154 376 376 ASP ASP A . n A 1 155 ILE 155 377 377 ILE ILE A . n A 1 156 ALA 156 378 378 ALA ALA A . n A 1 157 VAL 157 379 379 VAL VAL A . n A 1 158 GLU 158 380 380 GLU GLU A . n A 1 159 TRP 159 381 381 TRP TRP A . n A 1 160 GLU 160 382 382 GLU GLU A . n A 1 161 SER 161 383 383 SER SER A . n A 1 162 ASN 162 384 384 ASN ASN A . n A 1 163 GLY 163 385 385 GLY GLY A . n A 1 164 GLN 164 386 386 GLN GLN A . n A 1 165 PRO 165 387 387 PRO PRO A . n A 1 166 GLU 166 388 388 GLU GLU A . n A 1 167 ASN 167 389 389 ASN ASN A . n A 1 168 ASN 168 390 390 ASN ASN A . n A 1 169 TYR 169 391 391 TYR TYR A . n A 1 170 LYS 170 392 392 LYS LYS A . n A 1 171 THR 171 393 393 THR THR A . n A 1 172 THR 172 394 394 THR THR A . n A 1 173 PRO 173 395 395 PRO PRO A . n A 1 174 PRO 174 396 396 PRO PRO A . n A 1 175 VAL 175 397 397 VAL VAL A . n A 1 176 LEU 176 398 398 LEU LEU A . n A 1 177 ASP 177 399 399 ASP ASP A . n A 1 178 SER 178 400 400 SER SER A . n A 1 179 ASP 179 401 401 ASP ASP A . n A 1 180 GLY 180 402 402 GLY GLY A . n A 1 181 SER 181 403 403 SER SER A . n A 1 182 PHE 182 404 404 PHE PHE A . n A 1 183 PHE 183 405 405 PHE PHE A . n A 1 184 LEU 184 406 406 LEU LEU A . n A 1 185 TYR 185 407 407 TYR TYR A . n A 1 186 SER 186 408 408 SER SER A . n A 1 187 LYS 187 409 409 LYS LYS A . n A 1 188 LEU 188 410 410 LEU LEU A . n A 1 189 THR 189 411 411 THR THR A . n A 1 190 VAL 190 412 412 VAL VAL A . n A 1 191 ASP 191 413 413 ASP ASP A . n A 1 192 LYS 192 414 414 LYS LYS A . n A 1 193 SER 193 415 415 SER SER A . n A 1 194 ARG 194 416 416 ARG ARG A . n A 1 195 TRP 195 417 417 TRP TRP A . n A 1 196 GLN 196 418 418 GLN GLN A . n A 1 197 GLN 197 419 419 GLN GLN A . n A 1 198 GLY 198 420 420 GLY GLY A . n A 1 199 ASN 199 421 421 ASN ASN A . n A 1 200 VAL 200 422 422 VAL VAL A . n A 1 201 PHE 201 423 423 PHE PHE A . n A 1 202 SER 202 424 424 SER SER A . n A 1 203 CYS 203 425 425 CYS CYS A . n A 1 204 SER 204 426 426 SER SER A . n A 1 205 VAL 205 427 427 VAL VAL A . n A 1 206 MET 206 428 428 MET MET A . n A 1 207 HIS 207 429 429 HIS HIS A . n A 1 208 GLU 208 430 430 GLU GLU A . n A 1 209 ALA 209 431 431 ALA ALA A . n A 1 210 LEU 210 432 432 LEU LEU A . n A 1 211 HIS 211 433 433 HIS HIS A . n A 1 212 ASN 212 434 434 ASN ASN A . n A 1 213 HIS 213 435 435 HIS HIS A . n A 1 214 TYR 214 436 436 TYR TYR A . n A 1 215 THR 215 437 437 THR THR A . n A 1 216 GLN 216 438 438 GLN GLN A . n A 1 217 LYS 217 439 439 LYS LYS A . n A 1 218 SER 218 440 440 SER SER A . n A 1 219 LEU 219 441 441 LEU LEU A . n A 1 220 SER 220 442 442 SER SER A . n A 1 221 LEU 221 443 443 LEU LEU A . n A 1 222 SER 222 444 444 SER SER A . n A 1 223 PRO 223 445 ? ? ? A . n A 1 224 GLY 224 446 ? ? ? A . n A 1 225 LYS 225 447 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 1 1 ZN ZN A . D 3 ZN 1 2 2 ZN ZN A . E 3 ZN 1 3 3 ZN ZN A . F 3 ZN 1 4 4 ZN ZN A . G 4 HOH 1 448 1 HOH HOH A . G 4 HOH 2 449 2 HOH HOH A . G 4 HOH 3 450 3 HOH HOH A . G 4 HOH 4 451 4 HOH HOH A . G 4 HOH 5 452 5 HOH HOH A . G 4 HOH 6 453 6 HOH HOH A . G 4 HOH 7 454 7 HOH HOH A . G 4 HOH 8 455 8 HOH HOH A . G 4 HOH 9 456 9 HOH HOH A . G 4 HOH 10 457 11 HOH HOH A . G 4 HOH 11 458 12 HOH HOH A . G 4 HOH 12 459 13 HOH HOH A . G 4 HOH 13 460 14 HOH HOH A . G 4 HOH 14 461 15 HOH HOH A . G 4 HOH 15 462 16 HOH HOH A . G 4 HOH 16 463 17 HOH HOH A . G 4 HOH 17 464 18 HOH HOH A . G 4 HOH 18 465 19 HOH HOH A . G 4 HOH 19 466 20 HOH HOH A . G 4 HOH 20 467 21 HOH HOH A . G 4 HOH 21 468 24 HOH HOH A . H 4 HOH 1 10 10 HOH HOH C . H 4 HOH 2 22 22 HOH HOH C . H 4 HOH 3 23 23 HOH HOH C . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 75 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 297 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7660 ? 1 MORE -184.2 ? 1 'SSA (A^2)' 23860 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -37.1575000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 88 ? A HIS 310 ? 1_555 ZN ? C ZN . ? A ZN 1 ? 1_555 NE2 ? A HIS 213 ? A HIS 435 ? 1_555 111.7 ? 2 OE2 ? A GLU 96 ? A GLU 318 ? 1_555 ZN ? E ZN . ? A ZN 3 ? 1_555 O ? G HOH . ? A HOH 465 ? 1_555 113.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-04-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2021-10-20 5 'Structure model' 2 2 2023-08-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Advisory 4 3 'Structure model' 'Atomic model' 5 3 'Structure model' 'Data collection' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Structure summary' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' database_PDB_caveat 4 3 'Structure model' entity 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_nonpoly_scheme 13 3 'Structure model' pdbx_struct_assembly_gen 14 3 'Structure model' pdbx_struct_conn_angle 15 3 'Structure model' pdbx_validate_chiral 16 3 'Structure model' struct_asym 17 3 'Structure model' struct_conn 18 3 'Structure model' struct_site 19 3 'Structure model' struct_site_gen 20 4 'Structure model' chem_comp 21 4 'Structure model' database_2 22 4 'Structure model' struct_ref_seq_dif 23 5 'Structure model' chem_comp_atom 24 5 'Structure model' chem_comp_bond 25 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.occupancy' 14 3 'Structure model' '_atom_site.type_symbol' 15 3 'Structure model' '_chem_comp.name' 16 3 'Structure model' '_chem_comp.type' 17 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 3 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 3 'Structure model' '_struct_conn.pdbx_role' 24 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_chem_comp.pdbx_synonyms' 37 4 'Structure model' '_database_2.pdbx_DOI' 38 4 'Structure model' '_database_2.pdbx_database_accession' 39 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -17.1500 23.3843 -6.6168 0.1980 0.2094 0.1444 0.0332 -0.0284 -0.1088 3.8717 7.3491 2.0751 0.6229 -0.1046 2.0150 0.0421 -0.3740 0.9143 0.1806 -0.0694 0.0450 -0.2612 0.0562 0.0273 'X-RAY DIFFRACTION' 2 ? refined -3.8896 -7.4152 -11.1079 0.2069 0.2663 0.2397 0.0092 0.0400 0.1799 10.2996 2.0696 2.1965 0.0759 -1.5432 -0.2099 -0.1999 -1.1838 -1.5697 0.1274 -0.1235 -0.0953 0.0812 0.2294 0.3234 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 236 A 14 A 347 A 125 ? 'X-RAY DIFFRACTION' ? 2 2 A 348 A 126 A 444 A 222 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.2 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 406 ? ? CB A LEU 406 ? ? CG A LEU 406 ? ? 129.90 115.30 14.60 2.30 N 2 1 CB A LEU 406 ? ? CG A LEU 406 ? ? CD1 A LEU 406 ? ? 99.73 111.00 -11.27 1.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 268 ? ? -29.02 -30.63 2 1 TYR A 296 ? ? -67.73 6.73 3 1 SER A 354 ? ? -48.15 159.29 4 1 ASN A 384 ? ? 17.33 74.62 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id C _pdbx_validate_chiral.auth_comp_id FUC _pdbx_validate_chiral.auth_seq_id 9 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 223 ? A THR 1 2 1 Y 1 A HIS 224 ? A HIS 2 3 1 Y 1 A THR 225 ? A THR 3 4 1 Y 1 A CYS 226 ? A CYS 4 5 1 Y 1 A PRO 227 ? A PRO 5 6 1 Y 1 A PRO 228 ? A PRO 6 7 1 Y 1 A CYS 229 ? A CYS 7 8 1 Y 1 A PRO 230 ? A PRO 8 9 1 Y 1 A ALA 231 ? A ALA 9 10 1 Y 1 A PRO 232 ? A PRO 10 11 1 Y 1 A GLU 233 ? A GLU 11 12 1 Y 1 A LEU 234 ? A LEU 12 13 1 Y 1 A LEU 235 ? A LEU 13 14 1 Y 1 A PRO 445 ? A PRO 223 15 1 Y 1 A GLY 446 ? A GLY 224 16 1 Y 1 A LYS 447 ? A LYS 225 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 FUC C1 C N R 112 FUC C2 C N S 113 FUC C3 C N R 114 FUC C4 C N S 115 FUC C5 C N S 116 FUC C6 C N N 117 FUC O1 O N N 118 FUC O2 O N N 119 FUC O3 O N N 120 FUC O4 O N N 121 FUC O5 O N N 122 FUC H1 H N N 123 FUC H2 H N N 124 FUC H3 H N N 125 FUC H4 H N N 126 FUC H5 H N N 127 FUC H61 H N N 128 FUC H62 H N N 129 FUC H63 H N N 130 FUC HO1 H N N 131 FUC HO2 H N N 132 FUC HO3 H N N 133 FUC HO4 H N N 134 GAL C1 C N R 135 GAL C2 C N R 136 GAL C3 C N S 137 GAL C4 C N R 138 GAL C5 C N R 139 GAL C6 C N N 140 GAL O1 O N N 141 GAL O2 O N N 142 GAL O3 O N N 143 GAL O4 O N N 144 GAL O5 O N N 145 GAL O6 O N N 146 GAL H1 H N N 147 GAL H2 H N N 148 GAL H3 H N N 149 GAL H4 H N N 150 GAL H5 H N N 151 GAL H61 H N N 152 GAL H62 H N N 153 GAL HO1 H N N 154 GAL HO2 H N N 155 GAL HO3 H N N 156 GAL HO4 H N N 157 GAL HO6 H N N 158 GLN N N N N 159 GLN CA C N S 160 GLN C C N N 161 GLN O O N N 162 GLN CB C N N 163 GLN CG C N N 164 GLN CD C N N 165 GLN OE1 O N N 166 GLN NE2 N N N 167 GLN OXT O N N 168 GLN H H N N 169 GLN H2 H N N 170 GLN HA H N N 171 GLN HB2 H N N 172 GLN HB3 H N N 173 GLN HG2 H N N 174 GLN HG3 H N N 175 GLN HE21 H N N 176 GLN HE22 H N N 177 GLN HXT H N N 178 GLU N N N N 179 GLU CA C N S 180 GLU C C N N 181 GLU O O N N 182 GLU CB C N N 183 GLU CG C N N 184 GLU CD C N N 185 GLU OE1 O N N 186 GLU OE2 O N N 187 GLU OXT O N N 188 GLU H H N N 189 GLU H2 H N N 190 GLU HA H N N 191 GLU HB2 H N N 192 GLU HB3 H N N 193 GLU HG2 H N N 194 GLU HG3 H N N 195 GLU HE2 H N N 196 GLU HXT H N N 197 GLY N N N N 198 GLY CA C N N 199 GLY C C N N 200 GLY O O N N 201 GLY OXT O N N 202 GLY H H N N 203 GLY H2 H N N 204 GLY HA2 H N N 205 GLY HA3 H N N 206 GLY HXT H N N 207 HIS N N N N 208 HIS CA C N S 209 HIS C C N N 210 HIS O O N N 211 HIS CB C N N 212 HIS CG C Y N 213 HIS ND1 N Y N 214 HIS CD2 C Y N 215 HIS CE1 C Y N 216 HIS NE2 N Y N 217 HIS OXT O N N 218 HIS H H N N 219 HIS H2 H N N 220 HIS HA H N N 221 HIS HB2 H N N 222 HIS HB3 H N N 223 HIS HD1 H N N 224 HIS HD2 H N N 225 HIS HE1 H N N 226 HIS HE2 H N N 227 HIS HXT H N N 228 HOH O O N N 229 HOH H1 H N N 230 HOH H2 H N N 231 ILE N N N N 232 ILE CA C N S 233 ILE C C N N 234 ILE O O N N 235 ILE CB C N S 236 ILE CG1 C N N 237 ILE CG2 C N N 238 ILE CD1 C N N 239 ILE OXT O N N 240 ILE H H N N 241 ILE H2 H N N 242 ILE HA H N N 243 ILE HB H N N 244 ILE HG12 H N N 245 ILE HG13 H N N 246 ILE HG21 H N N 247 ILE HG22 H N N 248 ILE HG23 H N N 249 ILE HD11 H N N 250 ILE HD12 H N N 251 ILE HD13 H N N 252 ILE HXT H N N 253 LEU N N N N 254 LEU CA C N S 255 LEU C C N N 256 LEU O O N N 257 LEU CB C N N 258 LEU CG C N N 259 LEU CD1 C N N 260 LEU CD2 C N N 261 LEU OXT O N N 262 LEU H H N N 263 LEU H2 H N N 264 LEU HA H N N 265 LEU HB2 H N N 266 LEU HB3 H N N 267 LEU HG H N N 268 LEU HD11 H N N 269 LEU HD12 H N N 270 LEU HD13 H N N 271 LEU HD21 H N N 272 LEU HD22 H N N 273 LEU HD23 H N N 274 LEU HXT H N N 275 LYS N N N N 276 LYS CA C N S 277 LYS C C N N 278 LYS O O N N 279 LYS CB C N N 280 LYS CG C N N 281 LYS CD C N N 282 LYS CE C N N 283 LYS NZ N N N 284 LYS OXT O N N 285 LYS H H N N 286 LYS H2 H N N 287 LYS HA H N N 288 LYS HB2 H N N 289 LYS HB3 H N N 290 LYS HG2 H N N 291 LYS HG3 H N N 292 LYS HD2 H N N 293 LYS HD3 H N N 294 LYS HE2 H N N 295 LYS HE3 H N N 296 LYS HZ1 H N N 297 LYS HZ2 H N N 298 LYS HZ3 H N N 299 LYS HXT H N N 300 MAN C1 C N S 301 MAN C2 C N S 302 MAN C3 C N S 303 MAN C4 C N S 304 MAN C5 C N R 305 MAN C6 C N N 306 MAN O1 O N N 307 MAN O2 O N N 308 MAN O3 O N N 309 MAN O4 O N N 310 MAN O5 O N N 311 MAN O6 O N N 312 MAN H1 H N N 313 MAN H2 H N N 314 MAN H3 H N N 315 MAN H4 H N N 316 MAN H5 H N N 317 MAN H61 H N N 318 MAN H62 H N N 319 MAN HO1 H N N 320 MAN HO2 H N N 321 MAN HO3 H N N 322 MAN HO4 H N N 323 MAN HO6 H N N 324 MET N N N N 325 MET CA C N S 326 MET C C N N 327 MET O O N N 328 MET CB C N N 329 MET CG C N N 330 MET SD S N N 331 MET CE C N N 332 MET OXT O N N 333 MET H H N N 334 MET H2 H N N 335 MET HA H N N 336 MET HB2 H N N 337 MET HB3 H N N 338 MET HG2 H N N 339 MET HG3 H N N 340 MET HE1 H N N 341 MET HE2 H N N 342 MET HE3 H N N 343 MET HXT H N N 344 NAG C1 C N R 345 NAG C2 C N R 346 NAG C3 C N R 347 NAG C4 C N S 348 NAG C5 C N R 349 NAG C6 C N N 350 NAG C7 C N N 351 NAG C8 C N N 352 NAG N2 N N N 353 NAG O1 O N N 354 NAG O3 O N N 355 NAG O4 O N N 356 NAG O5 O N N 357 NAG O6 O N N 358 NAG O7 O N N 359 NAG H1 H N N 360 NAG H2 H N N 361 NAG H3 H N N 362 NAG H4 H N N 363 NAG H5 H N N 364 NAG H61 H N N 365 NAG H62 H N N 366 NAG H81 H N N 367 NAG H82 H N N 368 NAG H83 H N N 369 NAG HN2 H N N 370 NAG HO1 H N N 371 NAG HO3 H N N 372 NAG HO4 H N N 373 NAG HO6 H N N 374 PHE N N N N 375 PHE CA C N S 376 PHE C C N N 377 PHE O O N N 378 PHE CB C N N 379 PHE CG C Y N 380 PHE CD1 C Y N 381 PHE CD2 C Y N 382 PHE CE1 C Y N 383 PHE CE2 C Y N 384 PHE CZ C Y N 385 PHE OXT O N N 386 PHE H H N N 387 PHE H2 H N N 388 PHE HA H N N 389 PHE HB2 H N N 390 PHE HB3 H N N 391 PHE HD1 H N N 392 PHE HD2 H N N 393 PHE HE1 H N N 394 PHE HE2 H N N 395 PHE HZ H N N 396 PHE HXT H N N 397 PRO N N N N 398 PRO CA C N S 399 PRO C C N N 400 PRO O O N N 401 PRO CB C N N 402 PRO CG C N N 403 PRO CD C N N 404 PRO OXT O N N 405 PRO H H N N 406 PRO HA H N N 407 PRO HB2 H N N 408 PRO HB3 H N N 409 PRO HG2 H N N 410 PRO HG3 H N N 411 PRO HD2 H N N 412 PRO HD3 H N N 413 PRO HXT H N N 414 SER N N N N 415 SER CA C N S 416 SER C C N N 417 SER O O N N 418 SER CB C N N 419 SER OG O N N 420 SER OXT O N N 421 SER H H N N 422 SER H2 H N N 423 SER HA H N N 424 SER HB2 H N N 425 SER HB3 H N N 426 SER HG H N N 427 SER HXT H N N 428 THR N N N N 429 THR CA C N S 430 THR C C N N 431 THR O O N N 432 THR CB C N R 433 THR OG1 O N N 434 THR CG2 C N N 435 THR OXT O N N 436 THR H H N N 437 THR H2 H N N 438 THR HA H N N 439 THR HB H N N 440 THR HG1 H N N 441 THR HG21 H N N 442 THR HG22 H N N 443 THR HG23 H N N 444 THR HXT H N N 445 TRP N N N N 446 TRP CA C N S 447 TRP C C N N 448 TRP O O N N 449 TRP CB C N N 450 TRP CG C Y N 451 TRP CD1 C Y N 452 TRP CD2 C Y N 453 TRP NE1 N Y N 454 TRP CE2 C Y N 455 TRP CE3 C Y N 456 TRP CZ2 C Y N 457 TRP CZ3 C Y N 458 TRP CH2 C Y N 459 TRP OXT O N N 460 TRP H H N N 461 TRP H2 H N N 462 TRP HA H N N 463 TRP HB2 H N N 464 TRP HB3 H N N 465 TRP HD1 H N N 466 TRP HE1 H N N 467 TRP HE3 H N N 468 TRP HZ2 H N N 469 TRP HZ3 H N N 470 TRP HH2 H N N 471 TRP HXT H N N 472 TYR N N N N 473 TYR CA C N S 474 TYR C C N N 475 TYR O O N N 476 TYR CB C N N 477 TYR CG C Y N 478 TYR CD1 C Y N 479 TYR CD2 C Y N 480 TYR CE1 C Y N 481 TYR CE2 C Y N 482 TYR CZ C Y N 483 TYR OH O N N 484 TYR OXT O N N 485 TYR H H N N 486 TYR H2 H N N 487 TYR HA H N N 488 TYR HB2 H N N 489 TYR HB3 H N N 490 TYR HD1 H N N 491 TYR HD2 H N N 492 TYR HE1 H N N 493 TYR HE2 H N N 494 TYR HH H N N 495 TYR HXT H N N 496 VAL N N N N 497 VAL CA C N S 498 VAL C C N N 499 VAL O O N N 500 VAL CB C N N 501 VAL CG1 C N N 502 VAL CG2 C N N 503 VAL OXT O N N 504 VAL H H N N 505 VAL H2 H N N 506 VAL HA H N N 507 VAL HB H N N 508 VAL HG11 H N N 509 VAL HG12 H N N 510 VAL HG13 H N N 511 VAL HG21 H N N 512 VAL HG22 H N N 513 VAL HG23 H N N 514 VAL HXT H N N 515 ZN ZN ZN N N 516 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 FUC C1 C2 sing N N 107 FUC C1 O1 sing N N 108 FUC C1 O5 sing N N 109 FUC C1 H1 sing N N 110 FUC C2 C3 sing N N 111 FUC C2 O2 sing N N 112 FUC C2 H2 sing N N 113 FUC C3 C4 sing N N 114 FUC C3 O3 sing N N 115 FUC C3 H3 sing N N 116 FUC C4 C5 sing N N 117 FUC C4 O4 sing N N 118 FUC C4 H4 sing N N 119 FUC C5 C6 sing N N 120 FUC C5 O5 sing N N 121 FUC C5 H5 sing N N 122 FUC C6 H61 sing N N 123 FUC C6 H62 sing N N 124 FUC C6 H63 sing N N 125 FUC O1 HO1 sing N N 126 FUC O2 HO2 sing N N 127 FUC O3 HO3 sing N N 128 FUC O4 HO4 sing N N 129 GAL C1 C2 sing N N 130 GAL C1 O1 sing N N 131 GAL C1 O5 sing N N 132 GAL C1 H1 sing N N 133 GAL C2 C3 sing N N 134 GAL C2 O2 sing N N 135 GAL C2 H2 sing N N 136 GAL C3 C4 sing N N 137 GAL C3 O3 sing N N 138 GAL C3 H3 sing N N 139 GAL C4 C5 sing N N 140 GAL C4 O4 sing N N 141 GAL C4 H4 sing N N 142 GAL C5 C6 sing N N 143 GAL C5 O5 sing N N 144 GAL C5 H5 sing N N 145 GAL C6 O6 sing N N 146 GAL C6 H61 sing N N 147 GAL C6 H62 sing N N 148 GAL O1 HO1 sing N N 149 GAL O2 HO2 sing N N 150 GAL O3 HO3 sing N N 151 GAL O4 HO4 sing N N 152 GAL O6 HO6 sing N N 153 GLN N CA sing N N 154 GLN N H sing N N 155 GLN N H2 sing N N 156 GLN CA C sing N N 157 GLN CA CB sing N N 158 GLN CA HA sing N N 159 GLN C O doub N N 160 GLN C OXT sing N N 161 GLN CB CG sing N N 162 GLN CB HB2 sing N N 163 GLN CB HB3 sing N N 164 GLN CG CD sing N N 165 GLN CG HG2 sing N N 166 GLN CG HG3 sing N N 167 GLN CD OE1 doub N N 168 GLN CD NE2 sing N N 169 GLN NE2 HE21 sing N N 170 GLN NE2 HE22 sing N N 171 GLN OXT HXT sing N N 172 GLU N CA sing N N 173 GLU N H sing N N 174 GLU N H2 sing N N 175 GLU CA C sing N N 176 GLU CA CB sing N N 177 GLU CA HA sing N N 178 GLU C O doub N N 179 GLU C OXT sing N N 180 GLU CB CG sing N N 181 GLU CB HB2 sing N N 182 GLU CB HB3 sing N N 183 GLU CG CD sing N N 184 GLU CG HG2 sing N N 185 GLU CG HG3 sing N N 186 GLU CD OE1 doub N N 187 GLU CD OE2 sing N N 188 GLU OE2 HE2 sing N N 189 GLU OXT HXT sing N N 190 GLY N CA sing N N 191 GLY N H sing N N 192 GLY N H2 sing N N 193 GLY CA C sing N N 194 GLY CA HA2 sing N N 195 GLY CA HA3 sing N N 196 GLY C O doub N N 197 GLY C OXT sing N N 198 GLY OXT HXT sing N N 199 HIS N CA sing N N 200 HIS N H sing N N 201 HIS N H2 sing N N 202 HIS CA C sing N N 203 HIS CA CB sing N N 204 HIS CA HA sing N N 205 HIS C O doub N N 206 HIS C OXT sing N N 207 HIS CB CG sing N N 208 HIS CB HB2 sing N N 209 HIS CB HB3 sing N N 210 HIS CG ND1 sing Y N 211 HIS CG CD2 doub Y N 212 HIS ND1 CE1 doub Y N 213 HIS ND1 HD1 sing N N 214 HIS CD2 NE2 sing Y N 215 HIS CD2 HD2 sing N N 216 HIS CE1 NE2 sing Y N 217 HIS CE1 HE1 sing N N 218 HIS NE2 HE2 sing N N 219 HIS OXT HXT sing N N 220 HOH O H1 sing N N 221 HOH O H2 sing N N 222 ILE N CA sing N N 223 ILE N H sing N N 224 ILE N H2 sing N N 225 ILE CA C sing N N 226 ILE CA CB sing N N 227 ILE CA HA sing N N 228 ILE C O doub N N 229 ILE C OXT sing N N 230 ILE CB CG1 sing N N 231 ILE CB CG2 sing N N 232 ILE CB HB sing N N 233 ILE CG1 CD1 sing N N 234 ILE CG1 HG12 sing N N 235 ILE CG1 HG13 sing N N 236 ILE CG2 HG21 sing N N 237 ILE CG2 HG22 sing N N 238 ILE CG2 HG23 sing N N 239 ILE CD1 HD11 sing N N 240 ILE CD1 HD12 sing N N 241 ILE CD1 HD13 sing N N 242 ILE OXT HXT sing N N 243 LEU N CA sing N N 244 LEU N H sing N N 245 LEU N H2 sing N N 246 LEU CA C sing N N 247 LEU CA CB sing N N 248 LEU CA HA sing N N 249 LEU C O doub N N 250 LEU C OXT sing N N 251 LEU CB CG sing N N 252 LEU CB HB2 sing N N 253 LEU CB HB3 sing N N 254 LEU CG CD1 sing N N 255 LEU CG CD2 sing N N 256 LEU CG HG sing N N 257 LEU CD1 HD11 sing N N 258 LEU CD1 HD12 sing N N 259 LEU CD1 HD13 sing N N 260 LEU CD2 HD21 sing N N 261 LEU CD2 HD22 sing N N 262 LEU CD2 HD23 sing N N 263 LEU OXT HXT sing N N 264 LYS N CA sing N N 265 LYS N H sing N N 266 LYS N H2 sing N N 267 LYS CA C sing N N 268 LYS CA CB sing N N 269 LYS CA HA sing N N 270 LYS C O doub N N 271 LYS C OXT sing N N 272 LYS CB CG sing N N 273 LYS CB HB2 sing N N 274 LYS CB HB3 sing N N 275 LYS CG CD sing N N 276 LYS CG HG2 sing N N 277 LYS CG HG3 sing N N 278 LYS CD CE sing N N 279 LYS CD HD2 sing N N 280 LYS CD HD3 sing N N 281 LYS CE NZ sing N N 282 LYS CE HE2 sing N N 283 LYS CE HE3 sing N N 284 LYS NZ HZ1 sing N N 285 LYS NZ HZ2 sing N N 286 LYS NZ HZ3 sing N N 287 LYS OXT HXT sing N N 288 MAN C1 C2 sing N N 289 MAN C1 O1 sing N N 290 MAN C1 O5 sing N N 291 MAN C1 H1 sing N N 292 MAN C2 C3 sing N N 293 MAN C2 O2 sing N N 294 MAN C2 H2 sing N N 295 MAN C3 C4 sing N N 296 MAN C3 O3 sing N N 297 MAN C3 H3 sing N N 298 MAN C4 C5 sing N N 299 MAN C4 O4 sing N N 300 MAN C4 H4 sing N N 301 MAN C5 C6 sing N N 302 MAN C5 O5 sing N N 303 MAN C5 H5 sing N N 304 MAN C6 O6 sing N N 305 MAN C6 H61 sing N N 306 MAN C6 H62 sing N N 307 MAN O1 HO1 sing N N 308 MAN O2 HO2 sing N N 309 MAN O3 HO3 sing N N 310 MAN O4 HO4 sing N N 311 MAN O6 HO6 sing N N 312 MET N CA sing N N 313 MET N H sing N N 314 MET N H2 sing N N 315 MET CA C sing N N 316 MET CA CB sing N N 317 MET CA HA sing N N 318 MET C O doub N N 319 MET C OXT sing N N 320 MET CB CG sing N N 321 MET CB HB2 sing N N 322 MET CB HB3 sing N N 323 MET CG SD sing N N 324 MET CG HG2 sing N N 325 MET CG HG3 sing N N 326 MET SD CE sing N N 327 MET CE HE1 sing N N 328 MET CE HE2 sing N N 329 MET CE HE3 sing N N 330 MET OXT HXT sing N N 331 NAG C1 C2 sing N N 332 NAG C1 O1 sing N N 333 NAG C1 O5 sing N N 334 NAG C1 H1 sing N N 335 NAG C2 C3 sing N N 336 NAG C2 N2 sing N N 337 NAG C2 H2 sing N N 338 NAG C3 C4 sing N N 339 NAG C3 O3 sing N N 340 NAG C3 H3 sing N N 341 NAG C4 C5 sing N N 342 NAG C4 O4 sing N N 343 NAG C4 H4 sing N N 344 NAG C5 C6 sing N N 345 NAG C5 O5 sing N N 346 NAG C5 H5 sing N N 347 NAG C6 O6 sing N N 348 NAG C6 H61 sing N N 349 NAG C6 H62 sing N N 350 NAG C7 C8 sing N N 351 NAG C7 N2 sing N N 352 NAG C7 O7 doub N N 353 NAG C8 H81 sing N N 354 NAG C8 H82 sing N N 355 NAG C8 H83 sing N N 356 NAG N2 HN2 sing N N 357 NAG O1 HO1 sing N N 358 NAG O3 HO3 sing N N 359 NAG O4 HO4 sing N N 360 NAG O6 HO6 sing N N 361 PHE N CA sing N N 362 PHE N H sing N N 363 PHE N H2 sing N N 364 PHE CA C sing N N 365 PHE CA CB sing N N 366 PHE CA HA sing N N 367 PHE C O doub N N 368 PHE C OXT sing N N 369 PHE CB CG sing N N 370 PHE CB HB2 sing N N 371 PHE CB HB3 sing N N 372 PHE CG CD1 doub Y N 373 PHE CG CD2 sing Y N 374 PHE CD1 CE1 sing Y N 375 PHE CD1 HD1 sing N N 376 PHE CD2 CE2 doub Y N 377 PHE CD2 HD2 sing N N 378 PHE CE1 CZ doub Y N 379 PHE CE1 HE1 sing N N 380 PHE CE2 CZ sing Y N 381 PHE CE2 HE2 sing N N 382 PHE CZ HZ sing N N 383 PHE OXT HXT sing N N 384 PRO N CA sing N N 385 PRO N CD sing N N 386 PRO N H sing N N 387 PRO CA C sing N N 388 PRO CA CB sing N N 389 PRO CA HA sing N N 390 PRO C O doub N N 391 PRO C OXT sing N N 392 PRO CB CG sing N N 393 PRO CB HB2 sing N N 394 PRO CB HB3 sing N N 395 PRO CG CD sing N N 396 PRO CG HG2 sing N N 397 PRO CG HG3 sing N N 398 PRO CD HD2 sing N N 399 PRO CD HD3 sing N N 400 PRO OXT HXT sing N N 401 SER N CA sing N N 402 SER N H sing N N 403 SER N H2 sing N N 404 SER CA C sing N N 405 SER CA CB sing N N 406 SER CA HA sing N N 407 SER C O doub N N 408 SER C OXT sing N N 409 SER CB OG sing N N 410 SER CB HB2 sing N N 411 SER CB HB3 sing N N 412 SER OG HG sing N N 413 SER OXT HXT sing N N 414 THR N CA sing N N 415 THR N H sing N N 416 THR N H2 sing N N 417 THR CA C sing N N 418 THR CA CB sing N N 419 THR CA HA sing N N 420 THR C O doub N N 421 THR C OXT sing N N 422 THR CB OG1 sing N N 423 THR CB CG2 sing N N 424 THR CB HB sing N N 425 THR OG1 HG1 sing N N 426 THR CG2 HG21 sing N N 427 THR CG2 HG22 sing N N 428 THR CG2 HG23 sing N N 429 THR OXT HXT sing N N 430 TRP N CA sing N N 431 TRP N H sing N N 432 TRP N H2 sing N N 433 TRP CA C sing N N 434 TRP CA CB sing N N 435 TRP CA HA sing N N 436 TRP C O doub N N 437 TRP C OXT sing N N 438 TRP CB CG sing N N 439 TRP CB HB2 sing N N 440 TRP CB HB3 sing N N 441 TRP CG CD1 doub Y N 442 TRP CG CD2 sing Y N 443 TRP CD1 NE1 sing Y N 444 TRP CD1 HD1 sing N N 445 TRP CD2 CE2 doub Y N 446 TRP CD2 CE3 sing Y N 447 TRP NE1 CE2 sing Y N 448 TRP NE1 HE1 sing N N 449 TRP CE2 CZ2 sing Y N 450 TRP CE3 CZ3 doub Y N 451 TRP CE3 HE3 sing N N 452 TRP CZ2 CH2 doub Y N 453 TRP CZ2 HZ2 sing N N 454 TRP CZ3 CH2 sing Y N 455 TRP CZ3 HZ3 sing N N 456 TRP CH2 HH2 sing N N 457 TRP OXT HXT sing N N 458 TYR N CA sing N N 459 TYR N H sing N N 460 TYR N H2 sing N N 461 TYR CA C sing N N 462 TYR CA CB sing N N 463 TYR CA HA sing N N 464 TYR C O doub N N 465 TYR C OXT sing N N 466 TYR CB CG sing N N 467 TYR CB HB2 sing N N 468 TYR CB HB3 sing N N 469 TYR CG CD1 doub Y N 470 TYR CG CD2 sing Y N 471 TYR CD1 CE1 sing Y N 472 TYR CD1 HD1 sing N N 473 TYR CD2 CE2 doub Y N 474 TYR CD2 HD2 sing N N 475 TYR CE1 CZ doub Y N 476 TYR CE1 HE1 sing N N 477 TYR CE2 CZ sing Y N 478 TYR CE2 HE2 sing N N 479 TYR CZ OH sing N N 480 TYR OH HH sing N N 481 TYR OXT HXT sing N N 482 VAL N CA sing N N 483 VAL N H sing N N 484 VAL N H2 sing N N 485 VAL CA C sing N N 486 VAL CA CB sing N N 487 VAL CA HA sing N N 488 VAL C O doub N N 489 VAL C OXT sing N N 490 VAL CB CG1 sing N N 491 VAL CB CG2 sing N N 492 VAL CB HB sing N N 493 VAL CG1 HG11 sing N N 494 VAL CG1 HG12 sing N N 495 VAL CG1 HG13 sing N N 496 VAL CG2 HG21 sing N N 497 VAL CG2 HG22 sing N N 498 VAL CG2 HG23 sing N N 499 VAL OXT HXT sing N N 500 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 C NAG 1 C NAG 1 n B 2 NAG 2 C NAG 2 C NAG 2 n B 2 BMA 3 C BMA 3 C BMA 3 n B 2 MAN 4 C MAN 4 C MAN 7 n B 2 NAG 5 C NAG 5 C NAG 8 n B 2 GAL 6 C GAL 6 C GAL 9 n B 2 MAN 7 C MAN 7 C MAN 4 n B 2 NAG 8 C NAG 8 C NAG 5 n B 2 FUC 9 C FUC 9 C FUC 11 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 ;WURCS=2.0/5,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-3-1-4-5/a4-b1_a6-i1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_g4-h1 ; WURCS PDB2Glycan 1.1.0 3 2 ;[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{}}[(6+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}}}[(6+1)][b-L-Fucp]{}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 2 4 MAN C1 O1 3 BMA O6 HO6 sing ? 4 2 5 NAG C1 O1 4 MAN O2 HO2 sing ? 5 2 6 GAL C1 O1 5 NAG O4 HO4 sing ? 6 2 7 MAN C1 O1 3 BMA O3 HO3 sing ? 7 2 8 NAG C1 O1 7 MAN O2 HO2 sing ? 8 2 9 FUC C1 O1 1 NAG O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 2 MAN 4 n 2 NAG 5 n 2 GAL 6 n 2 MAN 7 n 2 NAG 8 n 2 FUC 9 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2DTQ _pdbx_initial_refinement_model.details ? #