HEADER FLUORESCENT PROTEIN 12-JUL-07 2QLE TITLE GFP/S205V MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GFP MUTANT, ALTERNATIVE EXCITED STATE PROTON TRANSFER PATHWAY, KEYWDS 2 FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.SHU,S.J.REMINGTON REVDAT 5 15-NOV-23 2QLE 1 REMARK REVDAT 4 30-AUG-23 2QLE 1 REMARK LINK REVDAT 3 27-JUN-18 2QLE 1 COMPND SOURCE DBREF SEQADV REVDAT 2 24-FEB-09 2QLE 1 VERSN REVDAT 1 12-FEB-08 2QLE 0 JRNL AUTH X.SHU,P.LEIDERMAN,R.GEPSHTEIN,N.R.SMITH,K.KALLIO,D.HUPPERT, JRNL AUTH 2 S.J.REMINGTON JRNL TITL AN ALTERNATIVE EXCITED-STATE PROTON TRANSFER PATHWAY IN JRNL TITL 2 GREEN FLUORESCENT PROTEIN VARIANT S205V. JRNL REF PROTEIN SCI. V. 16 2703 2007 JRNL REFN ISSN 0961-8368 JRNL PMID 17965188 JRNL DOI 10.1110/PS.073112007 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 119117 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.1760 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7000 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 859 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : NULL ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QLE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000043744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119117 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: TNT REMARK 200 STARTING MODEL: PDB ENTRY 1EMA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM IMIDAZOL PH 8.0, 1.1M NA CITRATE REMARK 280 AT ROOM TEMPERATURE FOR 6-7 MONTHS., TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 75.74800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 232 REMARK 465 MET B 233 REMARK 465 ASP B 234 REMARK 465 GLU B 235 REMARK 465 LEU B 236 REMARK 465 TYR B 237 REMARK 465 LYS B 238 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 LYS C 3 REMARK 465 GLY C 232 REMARK 465 MET C 233 REMARK 465 ASP C 234 REMARK 465 GLU C 235 REMARK 465 LEU C 236 REMARK 465 TYR C 237 REMARK 465 LYS C 238 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 LYS D 3 REMARK 465 GLY D 232 REMARK 465 MET D 233 REMARK 465 ASP D 234 REMARK 465 GLU D 235 REMARK 465 LEU D 236 REMARK 465 TYR D 237 REMARK 465 LYS D 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 5 OE2 REMARK 470 LYS A 26 NZ REMARK 470 LYS A 52 CD CE NZ REMARK 470 CRO A 66 CG1 REMARK 470 GLU A 90 OE2 REMARK 470 LYS A 101 CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 LYS A 131 NZ REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 GLN A 157 CB CG CD OE1 NE2 REMARK 470 LYS A 158 CB CG CD CE NZ REMARK 470 LYS A 162 CE NZ REMARK 470 GLU A 172 CD OE1 OE2 REMARK 470 LEU A 221 CD1 REMARK 470 GLU B 5 CG CD OE1 OE2 REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 ASP B 19 CG OD1 OD2 REMARK 470 LYS B 26 CD CE NZ REMARK 470 GLU B 32 CD OE1 OE2 REMARK 470 LYS B 52 CE NZ REMARK 470 CRO B 66 CG1 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 GLU B 90 CD OE1 OE2 REMARK 470 ASP B 117 CG OD1 OD2 REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 ASP B 133 CB CG OD1 OD2 REMARK 470 LYS B 156 CB CG CD CE NZ REMARK 470 GLN B 157 CB CG CD OE1 NE2 REMARK 470 LYS B 158 CB CG CD CE NZ REMARK 470 ASN B 159 CG OD1 ND2 REMARK 470 LYS B 162 CD CE NZ REMARK 470 ASN B 164 OD1 REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 SER B 175 OG REMARK 470 GLN B 184 CG CD OE1 NE2 REMARK 470 ASP B 190 CB CG OD1 OD2 REMARK 470 THR B 230 CG2 REMARK 470 GLU C 5 OE1 OE2 REMARK 470 GLU C 6 CG CD OE1 OE2 REMARK 470 GLU C 17 CD OE1 OE2 REMARK 470 LYS C 26 CE NZ REMARK 470 LYS C 52 CG CD CE NZ REMARK 470 CRO C 66 CG1 REMARK 470 ASP C 76 CG OD1 OD2 REMARK 470 LYS C 101 CD CE NZ REMARK 470 GLU C 132 CG CD OE1 OE2 REMARK 470 ASP C 133 CB CG OD1 OD2 REMARK 470 LYS C 156 CG CD CE NZ REMARK 470 GLN C 157 CB CG CD OE1 NE2 REMARK 470 LYS C 158 CB CG CD CE NZ REMARK 470 ASN C 159 OD1 REMARK 470 LYS C 162 CD CE NZ REMARK 470 LEU C 178 CD2 REMARK 470 ASP C 190 OD1 OD2 REMARK 470 LEU C 221 CD2 REMARK 470 GLU D 5 CD OE1 OE2 REMARK 470 GLU D 6 CG CD OE1 OE2 REMARK 470 LEU D 15 CG CD1 CD2 REMARK 470 LYS D 26 CD CE NZ REMARK 470 SER D 30 CB OG REMARK 470 LYS D 52 CB CG CD CE NZ REMARK 470 CRO D 66 CG1 REMARK 470 LYS D 79 CB CG CD CE NZ REMARK 470 ARG D 80 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU D 90 CB CG CD OE1 OE2 REMARK 470 LYS D 101 CG CD CE NZ REMARK 470 LYS D 107 CE NZ REMARK 470 GLU D 124 CD OE1 OE2 REMARK 470 LYS D 126 CD CE NZ REMARK 470 ASP D 129 CB CG OD1 OD2 REMARK 470 LYS D 131 CD CE NZ REMARK 470 GLU D 132 CG CD OE1 OE2 REMARK 470 ASP D 133 CG OD1 OD2 REMARK 470 ASP D 155 OD2 REMARK 470 LYS D 156 CB CG CD CE NZ REMARK 470 GLN D 157 CB CG CD OE1 NE2 REMARK 470 LYS D 158 CB CG CD CE NZ REMARK 470 LYS D 162 CG CD CE NZ REMARK 470 ASP D 173 CB CG OD1 OD2 REMARK 470 GLN D 184 CG CD OE1 NE2 REMARK 470 ASP D 190 OD1 OD2 REMARK 470 VAL D 193 CG2 REMARK 470 LYS D 214 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 474 O HOH D 354 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 224 CB VAL A 224 CG1 -0.149 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 18 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 ARG A 215 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 THR B 97 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 ASP B 180 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 VAL B 224 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 LEU C 15 CB - CG - CD2 ANGL. DEV. = -13.6 DEGREES REMARK 500 ILE C 128 CB - CA - C ANGL. DEV. = -13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 136 -73.79 -84.13 REMARK 500 ILE B 136 -77.38 -80.85 REMARK 500 GLN B 157 -7.63 68.16 REMARK 500 HIS B 199 -178.35 -173.00 REMARK 500 ILE C 136 -70.92 -80.98 REMARK 500 HIS C 139 63.57 34.24 REMARK 500 SER C 175 -172.35 -66.49 REMARK 500 ASN D 23 19.97 55.68 REMARK 500 ASN D 159 65.19 36.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 156 GLN B 157 -139.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD C 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD D 239 DBREF 2QLE A 1 238 UNP P42212 GFP_AEQVI 1 238 DBREF 2QLE B 1 238 UNP P42212 GFP_AEQVI 1 238 DBREF 2QLE C 1 238 UNP P42212 GFP_AEQVI 1 238 DBREF 2QLE D 1 238 UNP P42212 GFP_AEQVI 1 238 SEQADV 2QLE CRO A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 2QLE CRO A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 2QLE CRO A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 2QLE ARG A 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 2QLE VAL A 205 UNP P42212 SER 205 ENGINEERED MUTATION SEQADV 2QLE CRO B 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 2QLE CRO B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 2QLE CRO B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 2QLE ARG B 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 2QLE VAL B 205 UNP P42212 SER 205 ENGINEERED MUTATION SEQADV 2QLE CRO C 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 2QLE CRO C 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 2QLE CRO C 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 2QLE ARG C 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 2QLE VAL C 205 UNP P42212 SER 205 ENGINEERED MUTATION SEQADV 2QLE CRO D 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 2QLE CRO D 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 2QLE CRO D 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 2QLE ARG D 80 UNP P42212 GLN 80 ENGINEERED MUTATION SEQADV 2QLE VAL D 205 UNP P42212 SER 205 ENGINEERED MUTATION SEQRES 1 A 236 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 A 236 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 A 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE CRO SEQRES 6 A 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 A 236 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 A 236 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 A 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 A 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 A 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 A 236 ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 A 236 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 A 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 A 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 A 236 ASN HIS TYR LEU SER THR GLN VAL ALA LEU SER LYS ASP SEQRES 17 A 236 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 A 236 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 19 A 236 TYR LYS SEQRES 1 B 236 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 B 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 B 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 B 236 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 B 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE CRO SEQRES 6 B 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 B 236 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 B 236 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 B 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 B 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 B 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 B 236 ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 B 236 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 B 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 B 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 B 236 ASN HIS TYR LEU SER THR GLN VAL ALA LEU SER LYS ASP SEQRES 17 B 236 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 B 236 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 19 B 236 TYR LYS SEQRES 1 C 236 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 C 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 C 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 C 236 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 C 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE CRO SEQRES 6 C 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 C 236 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 C 236 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 C 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 C 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 C 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 C 236 ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 C 236 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 C 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 C 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 C 236 ASN HIS TYR LEU SER THR GLN VAL ALA LEU SER LYS ASP SEQRES 17 C 236 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 C 236 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 19 C 236 TYR LYS SEQRES 1 D 236 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 D 236 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 D 236 PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR TYR SEQRES 4 D 236 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 D 236 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE CRO SEQRES 6 D 236 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 D 236 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 D 236 GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN TYR SEQRES 9 D 236 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 D 236 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 D 236 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN TYR SEQRES 12 D 236 ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN LYS SEQRES 13 D 236 ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN ILE SEQRES 14 D 236 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 D 236 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 D 236 ASN HIS TYR LEU SER THR GLN VAL ALA LEU SER LYS ASP SEQRES 17 D 236 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 D 236 VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU SEQRES 19 D 236 TYR LYS MODRES 2QLE CRO A 66 SER CHROMOPHORE MODRES 2QLE CRO A 66 TYR CHROMOPHORE MODRES 2QLE CRO A 66 GLY CHROMOPHORE MODRES 2QLE CRO B 66 SER CHROMOPHORE MODRES 2QLE CRO B 66 TYR CHROMOPHORE MODRES 2QLE CRO B 66 GLY CHROMOPHORE MODRES 2QLE CRO C 66 SER CHROMOPHORE MODRES 2QLE CRO C 66 TYR CHROMOPHORE MODRES 2QLE CRO C 66 GLY CHROMOPHORE MODRES 2QLE CRO D 66 SER CHROMOPHORE MODRES 2QLE CRO D 66 TYR CHROMOPHORE MODRES 2QLE CRO D 66 GLY CHROMOPHORE HET CRO A 66 21 HET CRO B 66 21 HET CRO C 66 21 HET CRO D 66 21 HET IMD A 239 5 HET IMD B 239 5 HET IMD C 239 5 HET IMD D 239 5 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM IMD IMIDAZOLE HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO 4(C15 H17 N3 O5) FORMUL 5 IMD 4(C3 H5 N2 1+) FORMUL 9 HOH *859(H2 O) HELIX 1 1 GLY A 4 THR A 9 5 6 HELIX 2 2 PRO A 56 VAL A 61 5 6 HELIX 3 3 VAL A 68 SER A 72 5 5 HELIX 4 4 PRO A 75 HIS A 81 5 7 HELIX 5 5 ASP A 82 ALA A 87 1 6 HELIX 6 6 GLY B 4 THR B 9 5 6 HELIX 7 7 PRO B 56 VAL B 61 5 6 HELIX 8 8 VAL B 68 SER B 72 5 5 HELIX 9 9 PRO B 75 HIS B 81 5 7 HELIX 10 10 ASP B 82 ALA B 87 1 6 HELIX 11 11 GLY C 4 THR C 9 5 6 HELIX 12 12 PRO C 56 VAL C 61 5 6 HELIX 13 13 VAL C 68 SER C 72 5 5 HELIX 14 14 PRO C 75 HIS C 81 5 7 HELIX 15 15 ASP C 82 ALA C 87 1 6 HELIX 16 16 LYS C 156 ASN C 159 5 4 HELIX 17 17 GLY D 4 THR D 9 5 6 HELIX 18 18 PRO D 56 VAL D 61 5 6 HELIX 19 19 VAL D 68 SER D 72 5 5 HELIX 20 20 PRO D 75 HIS D 81 5 7 HELIX 21 21 ASP D 82 ALA D 87 1 6 SHEET 1 A12 VAL A 11 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O GLY A 31 N VAL A 16 SHEET 3 A12 LYS A 41 CYS A 48 -1 O ILE A 47 N SER A 30 SHEET 4 A12 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 A12 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 A12 HIS A 148 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 A12 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 A12 VAL A 176 PRO A 187 -1 O ALA A 179 N ILE A 167 SHEET 9 A12 TYR A 92 PHE A 100 -1 N GLU A 95 O GLN A 184 SHEET 10 A12 ASN A 105 GLU A 115 -1 O TYR A 106 N ILE A 98 SHEET 11 A12 THR A 118 ILE A 128 -1 O ARG A 122 N GLU A 111 SHEET 12 A12 VAL A 11 VAL A 22 1 N GLU A 17 O ILE A 123 SHEET 1 B12 VAL B 11 VAL B 22 0 SHEET 2 B12 HIS B 25 ASP B 36 -1 O GLY B 31 N VAL B 16 SHEET 3 B12 LYS B 41 CYS B 48 -1 O LYS B 41 N ASP B 36 SHEET 4 B12 HIS B 217 ALA B 227 -1 O LEU B 220 N LEU B 44 SHEET 5 B12 HIS B 199 SER B 208 -1 N ALA B 206 O LEU B 221 SHEET 6 B12 HIS B 148 ALA B 154 -1 N ILE B 152 O HIS B 199 SHEET 7 B12 ILE B 161 ASN B 170 -1 O LYS B 162 N MET B 153 SHEET 8 B12 VAL B 176 PRO B 187 -1 O GLN B 177 N HIS B 169 SHEET 9 B12 TYR B 92 PHE B 100 -1 N PHE B 99 O ASP B 180 SHEET 10 B12 ASN B 105 GLU B 115 -1 O VAL B 112 N TYR B 92 SHEET 11 B12 THR B 118 ILE B 128 -1 O VAL B 120 N LYS B 113 SHEET 12 B12 VAL B 11 VAL B 22 1 N ASP B 21 O GLY B 127 SHEET 1 C12 VAL C 12 VAL C 22 0 SHEET 2 C12 HIS C 25 ASP C 36 -1 O PHE C 27 N GLY C 20 SHEET 3 C12 LYS C 41 CYS C 48 -1 O ILE C 47 N SER C 30 SHEET 4 C12 HIS C 217 ALA C 227 -1 O LEU C 220 N LEU C 44 SHEET 5 C12 HIS C 199 SER C 208 -1 N SER C 202 O THR C 225 SHEET 6 C12 HIS C 148 ASP C 155 -1 N ILE C 152 O HIS C 199 SHEET 7 C12 GLY C 160 ASN C 170 -1 O LYS C 162 N MET C 153 SHEET 8 C12 VAL C 176 PRO C 187 -1 O GLN C 177 N HIS C 169 SHEET 9 C12 TYR C 92 PHE C 100 -1 N VAL C 93 O THR C 186 SHEET 10 C12 ASN C 105 GLU C 115 -1 O ALA C 110 N GLN C 94 SHEET 11 C12 THR C 118 ILE C 128 -1 O VAL C 120 N LYS C 113 SHEET 12 C12 VAL C 12 VAL C 22 1 N GLU C 17 O ILE C 123 SHEET 1 D12 VAL D 12 VAL D 22 0 SHEET 2 D12 HIS D 25 ASP D 36 -1 O PHE D 27 N GLY D 20 SHEET 3 D12 LYS D 41 CYS D 48 -1 O ILE D 47 N SER D 30 SHEET 4 D12 HIS D 217 ALA D 227 -1 O LEU D 220 N LEU D 44 SHEET 5 D12 HIS D 199 SER D 208 -1 N TYR D 200 O ALA D 227 SHEET 6 D12 HIS D 148 ASP D 155 -1 N ILE D 152 O HIS D 199 SHEET 7 D12 GLY D 160 ASN D 170 -1 O GLY D 160 N ASP D 155 SHEET 8 D12 VAL D 176 PRO D 187 -1 O GLN D 177 N HIS D 169 SHEET 9 D12 TYR D 92 PHE D 100 -1 N VAL D 93 O THR D 186 SHEET 10 D12 ASN D 105 GLU D 115 -1 O ALA D 110 N GLN D 94 SHEET 11 D12 THR D 118 ILE D 128 -1 O GLU D 124 N ARG D 109 SHEET 12 D12 VAL D 12 VAL D 22 1 N GLU D 17 O ILE D 123 LINK C PHE A 64 N1 CRO A 66 1555 1555 1.34 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.32 LINK C PHE B 64 N1 CRO B 66 1555 1555 1.34 LINK C3 CRO B 66 N VAL B 68 1555 1555 1.32 LINK C PHE C 64 N1 CRO C 66 1555 1555 1.34 LINK C3 CRO C 66 N VAL C 68 1555 1555 1.31 LINK C PHE D 64 N1 CRO D 66 1555 1555 1.33 LINK C3 CRO D 66 N VAL D 68 1555 1555 1.33 CISPEP 1 MET A 88 PRO A 89 0 1.17 CISPEP 2 MET B 88 PRO B 89 0 6.29 CISPEP 3 MET C 88 PRO C 89 0 5.24 CISPEP 4 MET D 88 PRO D 89 0 4.69 SITE 1 AC1 7 ASN A 144 TYR A 145 VAL A 205 LEU A 207 SITE 2 AC1 7 TYR C 39 LYS C 41 HOH C 388 SITE 1 AC2 7 ASN B 144 TYR B 145 VAL B 205 LEU B 207 SITE 2 AC2 7 HOH B 467 TYR D 39 LYS D 41 SITE 1 AC3 6 TYR A 39 LYS A 41 ASN C 144 TYR C 145 SITE 2 AC3 6 VAL C 205 LEU C 207 SITE 1 AC4 7 TYR B 39 LYS B 41 ASN D 144 TYR D 145 SITE 2 AC4 7 VAL D 205 ALA D 206 LEU D 207 CRYST1 54.832 151.496 59.729 90.00 110.23 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018238 0.000000 0.006721 0.00000 SCALE2 0.000000 0.006601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017843 0.00000