HEADER ISOMERASE 13-JUL-07 2QLX TITLE CRYSTAL STRUCTURE OF RHAMNOSE MUTAROTASE RHAU OF RHIZOBIUM TITLE 2 LEGUMINOSARUM IN COMPLEX WITH L-RHAMNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-RHAMNOSE MUTAROTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RHAMNOSE 1-EPIMERASE, TYPE-3 MUTAROTASE; COMPND 5 EC: 5.1.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM LEGUMINOSARUM BV. TRIFOLII; SOURCE 3 ORGANISM_TAXID: 386; SOURCE 4 GENE: RHAM, RHAU; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RHAU, MUTAROTASE, RHIZOBIUM LEGUMINOSARUM. L-RHAMNOSE, CARBOHYDRATE KEYWDS 2 METABOLISM, ISOMERASE, RHAMNOSE METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR X.CARPENA,P.C.LOEWEN REVDAT 7 15-NOV-23 2QLX 1 REMARK REVDAT 6 30-AUG-23 2QLX 1 HETSYN REVDAT 5 29-JUL-20 2QLX 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 18-OCT-17 2QLX 1 REMARK REVDAT 3 13-JUL-11 2QLX 1 VERSN REVDAT 2 09-DEC-08 2QLX 1 AUTHOR REVDAT 1 02-DEC-08 2QLX 0 JRNL AUTH J.S.RICHARDSON,X.CARPENA,J.SWITALA,R.PEREZ-LUQUE,L.J.DONALD, JRNL AUTH 2 P.C.LOEWEN,I.J.ORESNIK JRNL TITL RHAU OF RHIZOBIUM LEGUMINOSARUM IS A RHAMNOSE MUTAROTASE. JRNL REF J.BACTERIOL. V. 190 2903 2008 JRNL REFN ISSN 0021-9193 JRNL PMID 18156270 JRNL DOI 10.1128/JB.01120-07 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 18417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 942 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1281 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.1330 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.428 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1969 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1333 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2657 ; 1.777 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3293 ; 1.860 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 5.452 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;32.064 ;24.301 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;14.360 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.664 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2070 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 361 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 381 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1400 ; 0.210 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 918 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 951 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.300 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 55 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.181 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1383 ; 1.511 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 445 ; 0.341 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1853 ; 1.820 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 914 ; 3.093 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 796 ; 4.393 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 103 6 REMARK 3 1 B 1 B 103 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1386 ; 0.460 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1386 ; 1.540 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4101 16.6404 10.8476 REMARK 3 T TENSOR REMARK 3 T11: -0.0404 T22: -0.0319 REMARK 3 T33: -0.0048 T12: -0.0119 REMARK 3 T13: 0.0123 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.8010 L22: 1.1042 REMARK 3 L33: 1.1940 L12: -0.0913 REMARK 3 L13: -0.4179 L23: 0.5572 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.0175 S13: -0.0832 REMARK 3 S21: 0.0979 S22: -0.1240 S23: 0.1589 REMARK 3 S31: 0.0974 S32: -0.1375 S33: 0.1408 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5032 26.8217 -5.2403 REMARK 3 T TENSOR REMARK 3 T11: -0.0428 T22: -0.0469 REMARK 3 T33: -0.0376 T12: 0.0024 REMARK 3 T13: -0.0130 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.8041 L22: 1.4390 REMARK 3 L33: 0.9413 L12: -0.3672 REMARK 3 L13: -0.1261 L23: -0.4867 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: 0.1059 S13: 0.0691 REMARK 3 S21: -0.0250 S22: -0.0653 S23: -0.1101 REMARK 3 S31: -0.0177 S32: 0.0146 S33: 0.0710 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23317 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2QLW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM FORMATE, 0.1M SODIUM ACETATE REMARK 280 PH 4.6, 20% GLYCEROL , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.14600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.57300 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 33.57300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.14600 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 373 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 11 O HOH A 452 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 356 O HOH B 392 3565 2.09 REMARK 500 O HOH A 356 O HOH B 391 3565 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 100 CG1 - CB - CG2 ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 42.86 -97.02 REMARK 500 ASN A 92 -7.02 75.74 REMARK 500 ASN B 52 17.99 55.96 REMARK 500 ASP B 63 33.18 -91.73 REMARK 500 ASN B 92 -5.27 81.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 317 O REMARK 620 2 HOH A 318 O 89.7 REMARK 620 3 HOH A 390 O 169.9 90.3 REMARK 620 4 HOH A 409 O 92.4 174.9 88.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 83 O REMARK 620 2 MSE B 86 O 94.7 REMARK 620 3 THR B 88 OG1 103.6 103.9 REMARK 620 4 HOH B 391 O 97.5 163.8 83.7 REMARK 620 5 HOH B 392 O 168.9 91.4 83.8 74.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QLW RELATED DB: PDB REMARK 900 RHAU MUTAROTASE DBREF 2QLX A 1 106 UNP Q7BSH1 RHAM_RHILT 1 106 DBREF 2QLX B 1 106 UNP Q7BSH1 RHAM_RHILT 1 106 SEQADV 2QLX GLY A -1 UNP Q7BSH1 EXPRESSION TAG SEQADV 2QLX ASP A 0 UNP Q7BSH1 EXPRESSION TAG SEQADV 2QLX GLY B -1 UNP Q7BSH1 EXPRESSION TAG SEQADV 2QLX ASP B 0 UNP Q7BSH1 EXPRESSION TAG SEQRES 1 A 108 GLY ASP MSE THR LEU GLU LYS HIS ALA PHE LYS MSE GLN SEQRES 2 A 108 LEU ASN PRO GLY MSE GLU ALA GLU TYR ARG LYS ARG HIS SEQRES 3 A 108 ASP GLU ILE TRP PRO GLU LEU VAL ASP LEU LEU HIS GLN SEQRES 4 A 108 SER GLY ALA SER ASP TYR SER ILE HIS LEU ASP ARG GLU SEQRES 5 A 108 THR ASN THR LEU PHE GLY VAL LEU THR ARG PRO LYS ASP SEQRES 6 A 108 HIS THR MSE ALA SER LEU PRO ASP HIS PRO VAL MSE LYS SEQRES 7 A 108 LYS TRP TRP ALA HIS MSE ALA ASP ILE MSE ALA THR ASN SEQRES 8 A 108 PRO ASP ASN SER PRO VAL GLN SER ASP LEU VAL THR LEU SEQRES 9 A 108 PHE HIS MSE PRO SEQRES 1 B 108 GLY ASP MSE THR LEU GLU LYS HIS ALA PHE LYS MSE GLN SEQRES 2 B 108 LEU ASN PRO GLY MSE GLU ALA GLU TYR ARG LYS ARG HIS SEQRES 3 B 108 ASP GLU ILE TRP PRO GLU LEU VAL ASP LEU LEU HIS GLN SEQRES 4 B 108 SER GLY ALA SER ASP TYR SER ILE HIS LEU ASP ARG GLU SEQRES 5 B 108 THR ASN THR LEU PHE GLY VAL LEU THR ARG PRO LYS ASP SEQRES 6 B 108 HIS THR MSE ALA SER LEU PRO ASP HIS PRO VAL MSE LYS SEQRES 7 B 108 LYS TRP TRP ALA HIS MSE ALA ASP ILE MSE ALA THR ASN SEQRES 8 B 108 PRO ASP ASN SER PRO VAL GLN SER ASP LEU VAL THR LEU SEQRES 9 B 108 PHE HIS MSE PRO MODRES 2QLX MSE A 1 MET SELENOMETHIONINE MODRES 2QLX MSE A 10 MET SELENOMETHIONINE MODRES 2QLX MSE A 16 MET SELENOMETHIONINE MODRES 2QLX MSE A 66 MET SELENOMETHIONINE MODRES 2QLX MSE A 75 MET SELENOMETHIONINE MODRES 2QLX MSE A 82 MET SELENOMETHIONINE MODRES 2QLX MSE A 86 MET SELENOMETHIONINE MODRES 2QLX MSE A 105 MET SELENOMETHIONINE MODRES 2QLX MSE B 1 MET SELENOMETHIONINE MODRES 2QLX MSE B 10 MET SELENOMETHIONINE MODRES 2QLX MSE B 16 MET SELENOMETHIONINE MODRES 2QLX MSE B 66 MET SELENOMETHIONINE MODRES 2QLX MSE B 75 MET SELENOMETHIONINE MODRES 2QLX MSE B 82 MET SELENOMETHIONINE MODRES 2QLX MSE B 86 MET SELENOMETHIONINE MODRES 2QLX MSE B 105 MET SELENOMETHIONINE HET MSE A 1 18 HET MSE A 10 8 HET MSE A 16 8 HET MSE A 66 8 HET MSE A 75 11 HET MSE A 82 8 HET MSE A 86 12 HET MSE A 105 8 HET MSE B 1 18 HET MSE B 10 8 HET MSE B 16 8 HET MSE B 66 8 HET MSE B 75 11 HET MSE B 82 8 HET MSE B 86 12 HET MSE B 105 8 HET RM4 A 300 11 HET MG A 200 1 HET FMT A 301 3 HET FMT A 302 3 HET FMT A 303 3 HET FMT A 304 3 HET FMT A 305 3 HET FMT A 306 3 HET FMT A 307 3 HET FMT A 308 3 HET MG B 200 1 HET RM4 B 300 11 HET FMT B 301 3 HET FMT B 302 3 HET FMT B 303 3 HET FMT B 304 3 HET FMT B 305 3 HET FMT B 306 3 HET FMT B 307 3 HETNAM MSE SELENOMETHIONINE HETNAM RM4 BETA-L-RHAMNOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID HETSYN RM4 BETA-L-RHAMNOSE; 6-DEOXY-BETA-L-MANNOPYRANOSE; L- HETSYN 2 RM4 RHAMNOSE; RHAMNOSE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 RM4 2(C6 H12 O5) FORMUL 4 MG 2(MG 2+) FORMUL 5 FMT 15(C H2 O2) FORMUL 22 HOH *204(H2 O) HELIX 1 1 MSE A 16 GLU A 26 1 11 HELIX 2 2 TRP A 28 GLY A 39 1 12 HELIX 3 3 THR A 65 ASP A 71 5 7 HELIX 4 4 HIS A 72 ALA A 83 1 12 HELIX 5 5 ASP A 84 MSE A 86 5 3 HELIX 6 6 MSE B 16 GLU B 26 1 11 HELIX 7 7 TRP B 28 GLY B 39 1 12 HELIX 8 8 THR B 65 ASP B 71 5 7 HELIX 9 9 HIS B 72 ALA B 83 1 12 SHEET 1 A 5 SER A 97 ASP A 98 0 SHEET 2 A 5 LEU A 3 GLN A 11 -1 N LYS A 9 O SER A 97 SHEET 3 A 5 THR A 53 PRO A 61 -1 O ARG A 60 N GLU A 4 SHEET 4 A 5 SER A 41 ASP A 48 -1 N ASP A 48 O THR A 53 SHEET 5 A 5 VAL B 100 MSE B 105 -1 O VAL B 100 N LEU A 47 SHEET 1 B 5 VAL A 100 MSE A 105 0 SHEET 2 B 5 SER B 41 LEU B 47 -1 O ILE B 45 N LEU A 102 SHEET 3 B 5 THR B 53 PRO B 61 -1 O PHE B 55 N HIS B 46 SHEET 4 B 5 LEU B 3 GLN B 11 -1 N PHE B 8 O GLY B 56 SHEET 5 B 5 SER B 97 ASP B 98 -1 O SER B 97 N LYS B 9 LINK C ASP A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N THR A 2 1555 1555 1.34 LINK C LYS A 9 N MSE A 10 1555 1555 1.32 LINK C MSE A 10 N GLN A 11 1555 1555 1.34 LINK C GLY A 15 N MSE A 16 1555 1555 1.34 LINK C MSE A 16 N GLU A 17 1555 1555 1.34 LINK C THR A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N ALA A 67 1555 1555 1.34 LINK C VAL A 74 N MSE A 75 1555 1555 1.34 LINK C MSE A 75 N LYS A 76 1555 1555 1.32 LINK C HIS A 81 N MSE A 82 1555 1555 1.34 LINK C MSE A 82 N ALA A 83 1555 1555 1.34 LINK C ILE A 85 N MSE A 86 1555 1555 1.35 LINK C MSE A 86 N ALA A 87 1555 1555 1.33 LINK C HIS A 104 N MSE A 105 1555 1555 1.32 LINK C MSE A 105 N PRO A 106 1555 1555 1.32 LINK C ASP B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N THR B 2 1555 1555 1.33 LINK C LYS B 9 N MSE B 10 1555 1555 1.32 LINK C MSE B 10 N GLN B 11 1555 1555 1.33 LINK C GLY B 15 N MSE B 16 1555 1555 1.32 LINK C MSE B 16 N GLU B 17 1555 1555 1.33 LINK C THR B 65 N MSE B 66 1555 1555 1.33 LINK C MSE B 66 N ALA B 67 1555 1555 1.34 LINK C VAL B 74 N MSE B 75 1555 1555 1.34 LINK C MSE B 75 N LYS B 76 1555 1555 1.32 LINK C HIS B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N ALA B 83 1555 1555 1.32 LINK C ILE B 85 N MSE B 86 1555 1555 1.33 LINK C MSE B 86 N ALA B 87 1555 1555 1.34 LINK C HIS B 104 N MSE B 105 1555 1555 1.32 LINK C MSE B 105 N PRO B 106 1555 1555 1.32 LINK MG MG A 200 O HOH A 317 1555 1555 2.21 LINK MG MG A 200 O HOH A 318 1555 1555 2.25 LINK MG MG A 200 O HOH A 390 1555 1555 2.40 LINK MG MG A 200 O HOH A 409 1555 1555 2.38 LINK O ALA B 83 MG MG B 200 1555 1555 2.26 LINK O MSE B 86 MG MG B 200 1555 1555 2.24 LINK OG1 THR B 88 MG MG B 200 1555 1555 2.48 LINK MG MG B 200 O HOH B 391 1555 1555 2.46 LINK MG MG B 200 O HOH B 392 1555 1555 2.46 CRYST1 68.652 68.652 100.719 90.00 90.00 120.00 P 32 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014566 0.008410 0.000000 0.00000 SCALE2 0.000000 0.016820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009929 0.00000