HEADER ISOMERASE 13-JUL-07 2QLX TITLE CRYSTAL STRUCTURE OF RHAMNOSE MUTAROTASE RHAU OF RHIZOBIUM TITLE 2 LEGUMINOSARUM IN COMPLEX WITH L-RHAMNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-RHAMNOSE MUTAROTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RHAMNOSE 1-EPIMERASE, TYPE-3 MUTAROTASE; COMPND 5 EC: 5.1.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM LEGUMINOSARUM BV. TRIFOLII; SOURCE 3 ORGANISM_TAXID: 386; SOURCE 4 GENE: RHAM, RHAU; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RHAU, MUTAROTASE, RHIZOBIUM LEGUMINOSARUM. L-RHAMNOSE, CARBOHYDRATE KEYWDS 2 METABOLISM, ISOMERASE, RHAMNOSE METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR X.CARPENA,P.C.LOEWEN REVDAT 8 20-NOV-24 2QLX 1 REMARK REVDAT 7 15-NOV-23 2QLX 1 REMARK REVDAT 6 30-AUG-23 2QLX 1 HETSYN REVDAT 5 29-JUL-20 2QLX 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 18-OCT-17 2QLX 1 REMARK REVDAT 3 13-JUL-11 2QLX 1 VERSN REVDAT 2 09-DEC-08 2QLX 1 AUTHOR REVDAT 1 02-DEC-08 2QLX 0 JRNL AUTH J.S.RICHARDSON,X.CARPENA,J.SWITALA,R.PEREZ-LUQUE,L.J.DONALD, JRNL AUTH 2 P.C.LOEWEN,I.J.ORESNIK JRNL TITL RHAU OF RHIZOBIUM LEGUMINOSARUM IS A RHAMNOSE MUTAROTASE. JRNL REF J.BACTERIOL. V. 190 2903 2008 JRNL REFN ISSN 0021-9193 JRNL PMID 18156270 JRNL DOI 10.1128/JB.01120-07 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 18417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 942 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1281 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.1330 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.428 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1969 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1333 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2657 ; 1.777 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3293 ; 1.860 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 5.452 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;32.064 ;24.301 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;14.360 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.664 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 289 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2070 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 361 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 381 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1400 ; 0.210 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 918 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 951 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.300 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 55 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.181 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1383 ; 1.511 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 445 ; 0.341 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1853 ; 1.820 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 914 ; 3.093 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 796 ; 4.393 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 103 6 REMARK 3 1 B 1 B 103 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1386 ; 0.460 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1386 ; 1.540 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 3.4101 16.6404 10.8476 REMARK 3 T TENSOR REMARK 3 T11: -0.0404 T22: -0.0319 REMARK 3 T33: -0.0048 T12: -0.0119 REMARK 3 T13: 0.0123 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.8010 L22: 1.1042 REMARK 3 L33: 1.1940 L12: -0.0913 REMARK 3 L13: -0.4179 L23: 0.5572 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.0175 S13: -0.0832 REMARK 3 S21: 0.0979 S22: -0.1240 S23: 0.1589 REMARK 3 S31: 0.0974 S32: -0.1375 S33: 0.1408 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 106 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5032 26.8217 -5.2403 REMARK 3 T TENSOR REMARK 3 T11: -0.0428 T22: -0.0469 REMARK 3 T33: -0.0376 T12: 0.0024 REMARK 3 T13: -0.0130 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.8041 L22: 1.4390 REMARK 3 L33: 0.9413 L12: -0.3672 REMARK 3 L13: -0.1261 L23: -0.4867 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: 0.1059 S13: 0.0691 REMARK 3 S21: -0.0250 S22: -0.0653 S23: -0.1101 REMARK 3 S31: -0.0177 S32: 0.0146 S33: 0.0710 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23317 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2QLW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM FORMATE, 0.1M SODIUM ACETATE REMARK 280 PH 4.6, 20% GLYCEROL , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.14600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.57300 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 33.57300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.14600 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 373 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 11 O HOH A 452 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 356 O HOH B 392 3565 2.09 REMARK 500 O HOH A 356 O HOH B 391 3565 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 100 CG1 - CB - CG2 ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 42.86 -97.02 REMARK 500 ASN A 92 -7.02 75.74 REMARK 500 ASN B 52 17.99 55.96 REMARK 500 ASP B 63 33.18 -91.73 REMARK 500 ASN B 92 -5.27 81.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 317 O REMARK 620 2 HOH A 318 O 89.7 REMARK 620 3 HOH A 390 O 169.9 90.3 REMARK 620 4 HOH A 409 O 92.4 174.9 88.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 83 O REMARK 620 2 MSE B 86 O 94.7 REMARK 620 3 THR B 88 OG1 103.6 103.9 REMARK 620 4 HOH B 391 O 97.5 163.8 83.7 REMARK 620 5 HOH B 392 O 168.9 91.4 83.8 74.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QLW RELATED DB: PDB REMARK 900 RHAU MUTAROTASE DBREF 2QLX A 1 106 UNP Q7BSH1 RHAM_RHILT 1 106 DBREF 2QLX B 1 106 UNP Q7BSH1 RHAM_RHILT 1 106 SEQADV 2QLX GLY A -1 UNP Q7BSH1 EXPRESSION TAG SEQADV 2QLX ASP A 0 UNP Q7BSH1 EXPRESSION TAG SEQADV 2QLX GLY B -1 UNP Q7BSH1 EXPRESSION TAG SEQADV 2QLX ASP B 0 UNP Q7BSH1 EXPRESSION TAG SEQRES 1 A 108 GLY ASP MSE THR LEU GLU LYS HIS ALA PHE LYS MSE GLN SEQRES 2 A 108 LEU ASN PRO GLY MSE GLU ALA GLU TYR ARG LYS ARG HIS SEQRES 3 A 108 ASP GLU ILE TRP PRO GLU LEU VAL ASP LEU LEU HIS GLN SEQRES 4 A 108 SER GLY ALA SER ASP TYR SER ILE HIS LEU ASP ARG GLU SEQRES 5 A 108 THR ASN THR LEU PHE GLY VAL LEU THR ARG PRO LYS ASP SEQRES 6 A 108 HIS THR MSE ALA SER LEU PRO ASP HIS PRO VAL MSE LYS SEQRES 7 A 108 LYS TRP TRP ALA HIS MSE ALA ASP ILE MSE ALA THR ASN SEQRES 8 A 108 PRO ASP ASN SER PRO VAL GLN SER ASP LEU VAL THR LEU SEQRES 9 A 108 PHE HIS MSE PRO SEQRES 1 B 108 GLY ASP MSE THR LEU GLU LYS HIS ALA PHE LYS MSE GLN SEQRES 2 B 108 LEU ASN PRO GLY MSE GLU ALA GLU TYR ARG LYS ARG HIS SEQRES 3 B 108 ASP GLU ILE TRP PRO GLU LEU VAL ASP LEU LEU HIS GLN SEQRES 4 B 108 SER GLY ALA SER ASP TYR SER ILE HIS LEU ASP ARG GLU SEQRES 5 B 108 THR ASN THR LEU PHE GLY VAL LEU THR ARG PRO LYS ASP SEQRES 6 B 108 HIS THR MSE ALA SER LEU PRO ASP HIS PRO VAL MSE LYS SEQRES 7 B 108 LYS TRP TRP ALA HIS MSE ALA ASP ILE MSE ALA THR ASN SEQRES 8 B 108 PRO ASP ASN SER PRO VAL GLN SER ASP LEU VAL THR LEU SEQRES 9 B 108 PHE HIS MSE PRO MODRES 2QLX MSE A 1 MET SELENOMETHIONINE MODRES 2QLX MSE A 10 MET SELENOMETHIONINE MODRES 2QLX MSE A 16 MET SELENOMETHIONINE MODRES 2QLX MSE A 66 MET SELENOMETHIONINE MODRES 2QLX MSE A 75 MET SELENOMETHIONINE MODRES 2QLX MSE A 82 MET SELENOMETHIONINE MODRES 2QLX MSE A 86 MET SELENOMETHIONINE MODRES 2QLX MSE A 105 MET SELENOMETHIONINE MODRES 2QLX MSE B 1 MET SELENOMETHIONINE MODRES 2QLX MSE B 10 MET SELENOMETHIONINE MODRES 2QLX MSE B 16 MET SELENOMETHIONINE MODRES 2QLX MSE B 66 MET SELENOMETHIONINE MODRES 2QLX MSE B 75 MET SELENOMETHIONINE MODRES 2QLX MSE B 82 MET SELENOMETHIONINE MODRES 2QLX MSE B 86 MET SELENOMETHIONINE MODRES 2QLX MSE B 105 MET SELENOMETHIONINE HET MSE A 1 18 HET MSE A 10 8 HET MSE A 16 8 HET MSE A 66 8 HET MSE A 75 11 HET MSE A 82 8 HET MSE A 86 12 HET MSE A 105 8 HET MSE B 1 18 HET MSE B 10 8 HET MSE B 16 8 HET MSE B 66 8 HET MSE B 75 11 HET MSE B 82 8 HET MSE B 86 12 HET MSE B 105 8 HET RM4 A 300 11 HET MG A 200 1 HET FMT A 301 3 HET FMT A 302 3 HET FMT A 303 3 HET FMT A 304 3 HET FMT A 305 3 HET FMT A 306 3 HET FMT A 307 3 HET FMT A 308 3 HET MG B 200 1 HET RM4 B 300 11 HET FMT B 301 3 HET FMT B 302 3 HET FMT B 303 3 HET FMT B 304 3 HET FMT B 305 3 HET FMT B 306 3 HET FMT B 307 3 HETNAM MSE SELENOMETHIONINE HETNAM RM4 BETA-L-RHAMNOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID HETSYN RM4 BETA-L-RHAMNOSE; 6-DEOXY-BETA-L-MANNOPYRANOSE; L- HETSYN 2 RM4 RHAMNOSE; RHAMNOSE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 RM4 2(C6 H12 O5) FORMUL 4 MG 2(MG 2+) FORMUL 5 FMT 15(C H2 O2) FORMUL 22 HOH *204(H2 O) HELIX 1 1 MSE A 16 GLU A 26 1 11 HELIX 2 2 TRP A 28 GLY A 39 1 12 HELIX 3 3 THR A 65 ASP A 71 5 7 HELIX 4 4 HIS A 72 ALA A 83 1 12 HELIX 5 5 ASP A 84 MSE A 86 5 3 HELIX 6 6 MSE B 16 GLU B 26 1 11 HELIX 7 7 TRP B 28 GLY B 39 1 12 HELIX 8 8 THR B 65 ASP B 71 5 7 HELIX 9 9 HIS B 72 ALA B 83 1 12 SHEET 1 A 5 SER A 97 ASP A 98 0 SHEET 2 A 5 LEU A 3 GLN A 11 -1 N LYS A 9 O SER A 97 SHEET 3 A 5 THR A 53 PRO A 61 -1 O ARG A 60 N GLU A 4 SHEET 4 A 5 SER A 41 ASP A 48 -1 N ASP A 48 O THR A 53 SHEET 5 A 5 VAL B 100 MSE B 105 -1 O VAL B 100 N LEU A 47 SHEET 1 B 5 VAL A 100 MSE A 105 0 SHEET 2 B 5 SER B 41 LEU B 47 -1 O ILE B 45 N LEU A 102 SHEET 3 B 5 THR B 53 PRO B 61 -1 O PHE B 55 N HIS B 46 SHEET 4 B 5 LEU B 3 GLN B 11 -1 N PHE B 8 O GLY B 56 SHEET 5 B 5 SER B 97 ASP B 98 -1 O SER B 97 N LYS B 9 LINK C ASP A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N THR A 2 1555 1555 1.34 LINK C LYS A 9 N MSE A 10 1555 1555 1.32 LINK C MSE A 10 N GLN A 11 1555 1555 1.34 LINK C GLY A 15 N MSE A 16 1555 1555 1.34 LINK C MSE A 16 N GLU A 17 1555 1555 1.34 LINK C THR A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N ALA A 67 1555 1555 1.34 LINK C VAL A 74 N MSE A 75 1555 1555 1.34 LINK C MSE A 75 N LYS A 76 1555 1555 1.32 LINK C HIS A 81 N MSE A 82 1555 1555 1.34 LINK C MSE A 82 N ALA A 83 1555 1555 1.34 LINK C ILE A 85 N MSE A 86 1555 1555 1.35 LINK C MSE A 86 N ALA A 87 1555 1555 1.33 LINK C HIS A 104 N MSE A 105 1555 1555 1.32 LINK C MSE A 105 N PRO A 106 1555 1555 1.32 LINK C ASP B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N THR B 2 1555 1555 1.33 LINK C LYS B 9 N MSE B 10 1555 1555 1.32 LINK C MSE B 10 N GLN B 11 1555 1555 1.33 LINK C GLY B 15 N MSE B 16 1555 1555 1.32 LINK C MSE B 16 N GLU B 17 1555 1555 1.33 LINK C THR B 65 N MSE B 66 1555 1555 1.33 LINK C MSE B 66 N ALA B 67 1555 1555 1.34 LINK C VAL B 74 N MSE B 75 1555 1555 1.34 LINK C MSE B 75 N LYS B 76 1555 1555 1.32 LINK C HIS B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N ALA B 83 1555 1555 1.32 LINK C ILE B 85 N MSE B 86 1555 1555 1.33 LINK C MSE B 86 N ALA B 87 1555 1555 1.34 LINK C HIS B 104 N MSE B 105 1555 1555 1.32 LINK C MSE B 105 N PRO B 106 1555 1555 1.32 LINK MG MG A 200 O HOH A 317 1555 1555 2.21 LINK MG MG A 200 O HOH A 318 1555 1555 2.25 LINK MG MG A 200 O HOH A 390 1555 1555 2.40 LINK MG MG A 200 O HOH A 409 1555 1555 2.38 LINK O ALA B 83 MG MG B 200 1555 1555 2.26 LINK O MSE B 86 MG MG B 200 1555 1555 2.24 LINK OG1 THR B 88 MG MG B 200 1555 1555 2.48 LINK MG MG B 200 O HOH B 391 1555 1555 2.46 LINK MG MG B 200 O HOH B 392 1555 1555 2.46 CRYST1 68.652 68.652 100.719 90.00 90.00 120.00 P 32 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014566 0.008410 0.000000 0.00000 SCALE2 0.000000 0.016820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009929 0.00000 CONECT 7 13 CONECT 13 7 14 15 16 CONECT 14 13 17 19 CONECT 15 13 17 20 CONECT 16 13 17 21 CONECT 17 14 15 16 18 CONECT 17 31 CONECT 18 17 CONECT 19 14 22 CONECT 20 15 23 CONECT 21 16 24 CONECT 22 19 25 CONECT 23 20 26 CONECT 24 21 27 CONECT 25 22 28 CONECT 26 23 29 CONECT 27 24 30 CONECT 28 25 CONECT 29 26 CONECT 30 27 CONECT 31 17 CONECT 92 99 CONECT 99 92 100 CONECT 100 99 101 103 CONECT 101 100 102 107 CONECT 102 101 CONECT 103 100 104 CONECT 104 103 105 CONECT 105 104 106 CONECT 106 105 CONECT 107 101 CONECT 144 146 CONECT 146 144 147 CONECT 147 146 148 150 CONECT 148 147 149 154 CONECT 149 148 CONECT 150 147 151 CONECT 151 150 152 CONECT 152 151 153 CONECT 153 152 CONECT 154 148 CONECT 581 586 CONECT 586 581 587 CONECT 587 586 588 590 CONECT 588 587 589 594 CONECT 589 588 CONECT 590 587 591 CONECT 591 590 592 CONECT 592 591 593 CONECT 593 592 CONECT 594 588 CONECT 652 657 CONECT 657 652 658 CONECT 658 657 659 661 CONECT 659 658 660 668 CONECT 660 659 CONECT 661 658 662 663 CONECT 662 661 664 CONECT 663 661 665 CONECT 664 662 666 CONECT 665 663 667 CONECT 666 664 CONECT 667 665 CONECT 668 659 CONECT 725 733 CONECT 733 725 734 CONECT 734 733 735 737 CONECT 735 734 736 741 CONECT 736 735 CONECT 737 734 738 CONECT 738 737 739 CONECT 739 738 740 CONECT 740 739 CONECT 741 735 CONECT 756 762 CONECT 762 756 763 CONECT 763 762 764 766 767 CONECT 764 763 765 774 CONECT 765 764 CONECT 766 763 768 CONECT 767 763 769 CONECT 768 766 770 CONECT 769 767 771 CONECT 770 768 772 CONECT 771 769 773 CONECT 772 770 CONECT 773 771 CONECT 774 764 CONECT 910 918 CONECT 918 910 919 CONECT 919 918 920 922 CONECT 920 919 921 926 CONECT 921 920 CONECT 922 919 923 CONECT 923 922 924 CONECT 924 923 925 CONECT 925 924 CONECT 926 920 CONECT 941 947 CONECT 947 941 948 949 950 CONECT 948 947 951 953 CONECT 949 947 951 954 CONECT 950 947 951 955 CONECT 951 948 949 950 952 CONECT 951 965 CONECT 952 951 CONECT 953 948 956 CONECT 954 949 957 CONECT 955 950 958 CONECT 956 953 959 CONECT 957 954 960 CONECT 958 955 961 CONECT 959 956 962 CONECT 960 957 963 CONECT 961 958 964 CONECT 962 959 CONECT 963 960 CONECT 964 961 CONECT 965 951 CONECT 1026 1033 CONECT 1033 1026 1034 CONECT 1034 1033 1035 1037 CONECT 1035 1034 1036 1041 CONECT 1036 1035 CONECT 1037 1034 1038 CONECT 1038 1037 1039 CONECT 1039 1038 1040 CONECT 1040 1039 CONECT 1041 1035 CONECT 1075 1077 CONECT 1077 1075 1078 CONECT 1078 1077 1079 1081 CONECT 1079 1078 1080 1085 CONECT 1080 1079 CONECT 1081 1078 1082 CONECT 1082 1081 1083 CONECT 1083 1082 1084 CONECT 1084 1083 CONECT 1085 1079 CONECT 1507 1512 CONECT 1512 1507 1513 CONECT 1513 1512 1514 1516 CONECT 1514 1513 1515 1520 CONECT 1515 1514 CONECT 1516 1513 1517 CONECT 1517 1516 1518 CONECT 1518 1517 1519 CONECT 1519 1518 CONECT 1520 1514 CONECT 1582 1587 CONECT 1587 1582 1588 CONECT 1588 1587 1589 1591 CONECT 1589 1588 1590 1598 CONECT 1590 1589 CONECT 1591 1588 1592 1593 CONECT 1592 1591 1594 CONECT 1593 1591 1595 CONECT 1594 1592 1596 CONECT 1595 1593 1597 CONECT 1596 1594 CONECT 1597 1595 CONECT 1598 1589 CONECT 1651 1659 CONECT 1659 1651 1660 CONECT 1660 1659 1661 1663 CONECT 1661 1660 1662 1667 CONECT 1662 1661 CONECT 1663 1660 1664 CONECT 1664 1663 1665 CONECT 1665 1664 1666 CONECT 1666 1665 CONECT 1667 1661 CONECT 1670 1892 CONECT 1682 1688 CONECT 1688 1682 1689 CONECT 1689 1688 1690 1692 1693 CONECT 1690 1689 1691 1700 CONECT 1691 1690 1892 CONECT 1692 1689 1694 CONECT 1693 1689 1695 CONECT 1694 1692 1696 CONECT 1695 1693 1697 CONECT 1696 1694 1698 CONECT 1697 1695 1699 CONECT 1698 1696 CONECT 1699 1697 CONECT 1700 1690 CONECT 1710 1892 CONECT 1831 1839 CONECT 1839 1831 1840 CONECT 1840 1839 1841 1843 CONECT 1841 1840 1842 1847 CONECT 1842 1841 CONECT 1843 1840 1844 CONECT 1844 1843 1845 CONECT 1845 1844 1846 CONECT 1846 1845 CONECT 1847 1841 CONECT 1856 1857 1862 1866 CONECT 1857 1856 1858 1863 CONECT 1858 1857 1859 1864 CONECT 1859 1858 1860 1865 CONECT 1860 1859 1861 1866 CONECT 1861 1860 CONECT 1862 1856 CONECT 1863 1857 CONECT 1864 1858 CONECT 1865 1859 CONECT 1866 1856 1860 CONECT 1867 1931 1932 1972 1982 CONECT 1868 1869 1870 CONECT 1869 1868 CONECT 1870 1868 CONECT 1871 1872 1873 CONECT 1872 1871 CONECT 1873 1871 CONECT 1874 1875 1876 CONECT 1875 1874 CONECT 1876 1874 CONECT 1877 1878 1879 CONECT 1878 1877 CONECT 1879 1877 CONECT 1880 1881 1882 CONECT 1881 1880 CONECT 1882 1880 CONECT 1883 1884 1885 CONECT 1884 1883 CONECT 1885 1883 CONECT 1886 1887 1888 CONECT 1887 1886 CONECT 1888 1886 CONECT 1889 1890 1891 CONECT 1890 1889 CONECT 1891 1889 CONECT 1892 1670 1691 1710 2110 CONECT 1892 2111 CONECT 1893 1894 1899 1903 CONECT 1894 1893 1895 1900 CONECT 1895 1894 1896 1901 CONECT 1896 1895 1897 1902 CONECT 1897 1896 1898 1903 CONECT 1898 1897 CONECT 1899 1893 CONECT 1900 1894 CONECT 1901 1895 CONECT 1902 1896 CONECT 1903 1893 1897 CONECT 1904 1905 1906 CONECT 1905 1904 CONECT 1906 1904 CONECT 1907 1908 1909 CONECT 1908 1907 CONECT 1909 1907 CONECT 1910 1911 1912 CONECT 1911 1910 CONECT 1912 1910 CONECT 1913 1914 1915 CONECT 1914 1913 CONECT 1915 1913 CONECT 1916 1917 1918 CONECT 1917 1916 CONECT 1918 1916 CONECT 1919 1920 1921 CONECT 1920 1919 CONECT 1921 1919 CONECT 1922 1923 1924 CONECT 1923 1922 CONECT 1924 1922 CONECT 1931 1867 CONECT 1932 1867 CONECT 1972 1867 CONECT 1982 1867 CONECT 2110 1892 CONECT 2111 1892 MASTER 415 0 35 9 10 0 0 6 2021 2 274 18 END