HEADER TRANSFERASE 13-JUL-07 2QM3 TITLE CRYSTAL STRUCTURE OF A PREDICTED METHYLTRANSFERASE FROM PYROCOCCUS TITLE 2 FURIOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UNCHARACTERIZED PROTEIN PF1111; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS DSM 3638; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: DSM 3638, JCM 8422, VC1; SOURCE 5 ATCC: 43587; SOURCE 6 GENE: PF1111; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PUTATIVE METHYLTRANSFERASE, STRUCTURAL GENOMICS, PYROCOCCUS FURIOSUS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,E.DUGGAN,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2QM3 1 VERSN REVDAT 2 24-FEB-09 2QM3 1 VERSN REVDAT 1 11-SEP-07 2QM3 0 JRNL AUTH M.E.CUFF,E.DUGGAN,S.CLANCY,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A PREDICTED METHYLTRANSFERASE FROM JRNL TITL 2 PYROCOCCUS FURIOSUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 22125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1189 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1258 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2770 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 36.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.14000 REMARK 3 B22 (A**2) : -1.84000 REMARK 3 B33 (A**2) : 3.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.626 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2882 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3910 ; 1.387 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 5.553 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;36.845 ;24.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 521 ;15.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;22.952 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2196 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1324 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1997 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.057 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.137 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1758 ; 0.936 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2790 ; 1.405 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1268 ; 2.282 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1115 ; 3.517 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 47.9988 12.3660 42.8343 REMARK 3 T TENSOR REMARK 3 T11: -0.0734 T22: -0.0967 REMARK 3 T33: -0.1143 T12: -0.0193 REMARK 3 T13: 0.0102 T23: -0.0980 REMARK 3 L TENSOR REMARK 3 L11: 3.3019 L22: 1.3798 REMARK 3 L33: 0.2605 L12: -0.4801 REMARK 3 L13: 0.0095 L23: -0.0348 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: -0.4184 S13: 0.5407 REMARK 3 S21: 0.0955 S22: -0.0205 S23: -0.1954 REMARK 3 S31: -0.0725 S32: 0.0086 S33: -0.0283 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. THE LINK (RESIDUES 88 THROUGH 99) BETWEEN THE N- AND C-TERMINAL REMARK 3 STRUCTURAL DOMAINS IS MISSING. FOR THE TWO MOLECULES RELATED BY REMARK 3 THE REMARK 3 CRYSTALLOGRAPHIC 2-FOLD AXIS, THE PAIRING OF DOMAINS IS AMBIGUOUS. REMARK 3 THE AUTHORS HAVE MODELED THE MORE COMPACT COMBINATION, BUT THE REMARK 3 OTHER REMARK 3 REMAINS POSSIBLE GIVEN THE DATA AT HAND. REMARK 3 2. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 2QM3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB043769. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918, 0.97932 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22125 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 39.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41500 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, SHELXE, MLPHARE, DM, SOLVE/ REMARK 200 RESOLVE, ARP/WARP, CCP4, O, COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 0.2M CALCIUM REMARK 280 ACETATE, 10% PEG 8000, 4% BUTYROLACTONE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.19100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.63100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.19100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.63100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 EXPERIMENTALLY UNKNOWN, AND THAT THE DIMERIC ASSEMBLY SHOWN IN REMARK 300 REMARK 350 IS A PREDICTION BASED ON CRYSTAL PACKING. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 82.38200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 PHE A 88 REMARK 465 THR A 89 REMARK 465 CYS A 90 REMARK 465 PRO A 91 REMARK 465 HIS A 92 REMARK 465 CYS A 93 REMARK 465 GLN A 94 REMARK 465 GLY A 95 REMARK 465 LYS A 96 REMARK 465 THR A 97 REMARK 465 VAL A 98 REMARK 465 ASP A 99 REMARK 465 ASP A 343 REMARK 465 GLU A 344 REMARK 465 GLU A 345 REMARK 465 SER A 346 REMARK 465 SER A 347 REMARK 465 THR A 348 REMARK 465 THR A 349 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 33 O HOH A 510 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 65 72.79 -158.22 REMARK 500 ASP A 157 47.90 -147.31 REMARK 500 ASP A 198 46.00 -90.66 REMARK 500 GLU A 227 31.38 -92.81 REMARK 500 ASP A 333 -131.91 -114.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 490 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A 533 DISTANCE = 7.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 350 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 127 O REMARK 620 2 ASP A 158 OD1 92.4 REMARK 620 3 ASP A 158 OD2 78.5 50.8 REMARK 620 4 HOH A 521 O 84.3 82.3 128.5 REMARK 620 5 HOH A 514 O 93.1 156.1 152.9 75.1 REMARK 620 6 HOH A 517 O 171.4 96.0 108.2 95.1 78.5 REMARK 620 7 HOH A 529 O 95.4 130.5 83.1 147.1 72.0 80.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 351 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 623 O REMARK 620 2 HOH A 622 O 83.4 REMARK 620 3 HOH A 619 O 82.9 153.4 REMARK 620 4 HOH A 621 O 156.7 76.8 120.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC85638 RELATED DB: TARGETDB DBREF 2QM3 A 1 349 UNP Q8U1U4 Q8U1U4_PYRFU 1 349 SEQADV 2QM3 MSE A -23 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 HIS A -22 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 HIS A -21 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 HIS A -20 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 HIS A -19 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 HIS A -18 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 HIS A -17 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 SER A -16 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 SER A -15 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 GLY A -14 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 VAL A -13 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 ASP A -12 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 LEU A -11 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 GLY A -10 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 THR A -9 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 GLU A -8 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 ASN A -7 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 LEU A -6 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 TYR A -5 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 PHE A -4 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 GLN A -3 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 SER A -2 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 ASN A -1 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 ALA A 0 UNP Q8U1U4 EXPRESSION TAG SEQADV 2QM3 MSE A 1 UNP Q8U1U4 MET 1 MODIFIED RESIDUE SEQADV 2QM3 MSE A 141 UNP Q8U1U4 MET 141 MODIFIED RESIDUE SEQADV 2QM3 MSE A 166 UNP Q8U1U4 MET 166 MODIFIED RESIDUE SEQADV 2QM3 MSE A 319 UNP Q8U1U4 MET 319 MODIFIED RESIDUE SEQRES 1 A 373 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 373 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MSE LYS SEQRES 3 A 373 GLU ILE VAL GLU ARG VAL LYS THR LYS THR LYS ILE PRO SEQRES 4 A 373 VAL TYR GLU ARG SER VAL GLU ASN VAL LEU SER ALA VAL SEQRES 5 A 373 LEU ALA SER ASP ASP ILE TRP ARG ILE VAL ASP LEU SER SEQRES 6 A 373 GLU GLU PRO LEU PRO LEU VAL VAL ALA ILE LEU GLU SER SEQRES 7 A 373 LEU ASN GLU LEU GLY TYR VAL THR PHE GLU ASP GLY VAL SEQRES 8 A 373 LYS LEU THR GLU LYS GLY GLU GLU LEU VAL ALA GLU TYR SEQRES 9 A 373 GLY ILE GLY LYS ARG TYR ASP PHE THR CYS PRO HIS CYS SEQRES 10 A 373 GLN GLY LYS THR VAL ASP LEU GLN ALA PHE ALA ASP LEU SEQRES 11 A 373 LEU GLU GLN PHE ARG GLU ILE VAL LYS ASP ARG PRO GLU SEQRES 12 A 373 PRO LEU HIS GLU PHE ASP GLN ALA TYR VAL THR PRO GLU SEQRES 13 A 373 THR THR VAL ALA ARG VAL ILE LEU MSE HIS THR ARG GLY SEQRES 14 A 373 ASP LEU GLU ASN LYS ASP ILE PHE VAL LEU GLY ASP ASP SEQRES 15 A 373 ASP LEU THR SER ILE ALA LEU MSE LEU SER GLY LEU PRO SEQRES 16 A 373 LYS ARG ILE ALA VAL LEU ASP ILE ASP GLU ARG LEU THR SEQRES 17 A 373 LYS PHE ILE GLU LYS ALA ALA ASN GLU ILE GLY TYR GLU SEQRES 18 A 373 ASP ILE GLU ILE PHE THR PHE ASP LEU ARG LYS PRO LEU SEQRES 19 A 373 PRO ASP TYR ALA LEU HIS LYS PHE ASP THR PHE ILE THR SEQRES 20 A 373 ASP PRO PRO GLU THR LEU GLU ALA ILE ARG ALA PHE VAL SEQRES 21 A 373 GLY ARG GLY ILE ALA THR LEU LYS GLY PRO ARG CYS ALA SEQRES 22 A 373 GLY TYR PHE GLY ILE THR ARG ARG GLU SER SER LEU ASP SEQRES 23 A 373 LYS TRP ARG GLU ILE GLN LYS LEU LEU LEU ASN GLU PHE SEQRES 24 A 373 ASN VAL VAL ILE THR ASP ILE ILE ARG ASN PHE ASN GLU SEQRES 25 A 373 TYR VAL ASN TRP GLY TYR ALA GLU GLU THR ARG ALA TRP SEQRES 26 A 373 LYS LEU ILE PRO ILE LYS LYS LEU PRO GLU TYR ASN TRP SEQRES 27 A 373 TYR LYS SER TYR MSE PHE ARG ILE GLU THR LEU GLU GLY SEQRES 28 A 373 SER ARG GLY TYR GLU ASP GLU ILE PRO GLU GLU ASP ILE SEQRES 29 A 373 TYR ASN ASP GLU GLU SER SER THR THR MODRES 2QM3 MSE A 1 MET SELENOMETHIONINE MODRES 2QM3 MSE A 141 MET SELENOMETHIONINE MODRES 2QM3 MSE A 166 MET SELENOMETHIONINE MODRES 2QM3 MSE A 319 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 141 8 HET MSE A 166 8 HET MSE A 319 13 HET CA A 350 1 HET CA A 351 1 HET ACY A 401 4 HET ACY A 402 4 HET ACY A 403 4 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM ACY ACETIC ACID FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 ACY 3(C2 H4 O2) FORMUL 7 HOH *223(H2 O) HELIX 1 1 ASN A -1 THR A 10 1 12 HELIX 2 2 TYR A 17 SER A 31 1 15 HELIX 3 3 ASP A 33 GLU A 42 1 10 HELIX 4 4 PRO A 44 LEU A 58 1 15 HELIX 5 5 THR A 70 GLY A 81 1 12 HELIX 6 6 LEU A 100 ALA A 102 5 3 HELIX 7 7 PHE A 103 LYS A 115 1 13 HELIX 8 8 LEU A 121 ASP A 125 5 5 HELIX 9 9 THR A 130 ARG A 144 1 15 HELIX 10 10 LEU A 160 GLY A 169 1 10 HELIX 11 11 ASP A 180 GLY A 195 1 16 HELIX 12 12 THR A 228 THR A 242 1 15 HELIX 13 13 SER A 260 GLU A 274 1 15 HELIX 14 14 TYR A 294 GLU A 297 5 4 HELIX 15 15 THR A 298 ILE A 304 1 7 SHEET 1 A 2 VAL A 61 THR A 62 0 SHEET 2 A 2 LYS A 68 LEU A 69 -1 O LYS A 68 N THR A 62 SHEET 1 B 7 ILE A 199 PHE A 202 0 SHEET 2 B 7 ARG A 173 LEU A 177 1 N VAL A 176 O PHE A 202 SHEET 3 B 7 ASP A 151 LEU A 155 1 N VAL A 154 O ALA A 175 SHEET 4 B 7 THR A 220 THR A 223 1 O THR A 220 N PHE A 153 SHEET 5 B 7 ALA A 249 ILE A 254 1 O ALA A 249 N PHE A 221 SHEET 6 B 7 LYS A 316 GLU A 323 -1 O TYR A 318 N ILE A 254 SHEET 7 B 7 VAL A 278 GLU A 288 -1 N ILE A 283 O MSE A 319 LINK O ALA A 127 CA CA A 350 1555 1555 2.34 LINK OD1 ASP A 158 CA CA A 350 1555 1555 2.50 LINK OD2 ASP A 158 CA CA A 350 1555 1555 2.57 LINK CA CA A 350 O HOH A 521 1555 1555 2.41 LINK CA CA A 350 O HOH A 514 1555 1555 2.48 LINK CA CA A 350 O HOH A 517 1555 1555 2.55 LINK CA CA A 350 O HOH A 529 1555 1555 2.43 LINK CA CA A 351 O HOH A 623 1555 1555 2.80 LINK CA CA A 351 O HOH A 622 1555 1555 2.64 LINK CA CA A 351 O HOH A 619 1555 1555 2.78 LINK CA CA A 351 O HOH A 621 1555 1555 2.80 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.32 LINK C LEU A 140 N MSE A 141 1555 1555 1.33 LINK C MSE A 141 N HIS A 142 1555 1555 1.34 LINK C LEU A 165 N MSE A 166 1555 1555 1.34 LINK C MSE A 166 N LEU A 167 1555 1555 1.33 LINK C TYR A 318 N MSE A 319 1555 1555 1.34 LINK C MSE A 319 N PHE A 320 1555 1555 1.33 SITE 1 AC1 6 ALA A 127 ASP A 158 HOH A 514 HOH A 517 SITE 2 AC1 6 HOH A 521 HOH A 529 SITE 1 AC2 6 HOH A 619 HOH A 620 HOH A 621 HOH A 622 SITE 2 AC2 6 HOH A 623 HOH A 626 SITE 1 AC3 7 ASN A 291 TRP A 292 GLY A 293 TYR A 294 SITE 2 AC3 7 ALA A 295 TRP A 314 HOH A 422 SITE 1 AC4 2 VAL A 16 HOH A 618 SITE 1 AC5 6 HIS A 216 ILE A 240 LEU A 243 GLY A 245 SITE 2 AC5 6 SER A 328 ARG A 329 CRYST1 82.382 85.262 53.963 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012139 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018531 0.00000