HEADER UNKNOWN FUNCTION 16-JUL-07 2QML TITLE CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN (BH2621) FROM BACILLUS TITLE 2 HALODURANS AT 1.55 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BH2621 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS; SOURCE 3 ORGANISM_TAXID: 86665; SOURCE 4 STRAIN: C-125, DSM 18197, FERM 7344, JCM 9153; SOURCE 5 ATCC: BAA-125; SOURCE 6 GENE: NP_243487.1, BH2621; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2QML 1 REMARK SEQADV REVDAT 6 24-JUL-19 2QML 1 REMARK LINK REVDAT 5 25-OCT-17 2QML 1 REMARK REVDAT 4 13-JUL-11 2QML 1 VERSN REVDAT 3 23-MAR-11 2QML 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2QML 1 VERSN REVDAT 1 04-SEP-07 2QML 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN BH2621 JRNL TITL 2 (NP_243487.1) FROM BACILLUS HALODURANS AT 1.55 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 34365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1733 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2330 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57000 REMARK 3 B22 (A**2) : 0.57000 REMARK 3 B33 (A**2) : -1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1759 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1193 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2395 ; 1.679 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2931 ; 1.077 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 4.619 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;35.710 ;25.116 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 314 ;11.820 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;17.337 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 246 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1965 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 349 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 367 ; 0.210 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1263 ; 0.182 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 867 ; 0.182 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 829 ; 0.089 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 242 ; 0.193 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.238 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 41 ; 0.267 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.249 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1113 ; 1.958 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 402 ; 0.508 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1689 ; 2.730 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 829 ; 4.663 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 706 ; 6.187 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 62.3920 54.1800 20.6840 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: -0.0155 REMARK 3 T33: -0.0699 T12: -0.0214 REMARK 3 T13: 0.0097 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.6306 L22: 0.4337 REMARK 3 L33: 1.1769 L12: 0.1201 REMARK 3 L13: -0.0292 L23: 0.2195 REMARK 3 S TENSOR REMARK 3 S11: 0.0601 S12: 0.0177 S13: -0.0145 REMARK 3 S21: 0.0120 S22: -0.0702 S23: 0.0043 REMARK 3 S31: 0.0347 S32: -0.0864 S33: 0.0102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. ONE SODIUM ION, THREE CHLORIDE IONS AND TWO GLYCEROL MOLECULES REMARK 3 WERE MODELED. REMARK 3 5. RESIDUES 1 TO 4 ARE DISORDERED AND NOT MODELED IN THE REMARK 3 STRUCTURE. REMARK 3 6. ELECTRON DENSITY NEAR RESIDUES 47, 119, 123 AND 150 IS REMARK 3 UNMODELED. REMARK 4 REMARK 4 2QML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043787. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920, 0.91837, 0.97891 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34417 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 28.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.94500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M SODIUM CHLORIDE, 2.0M REMARK 280 AMMONIUM SULFATE, 0.1M SODIUM CACODYLATE PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.28000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.39000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.64000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.39000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.92000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.39000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.39000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.64000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.39000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.39000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.92000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.28000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1,2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION REMARK 300 ON BURIED SURFACE AREA. REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY INDICATES THAT THE MONOMER REMARK 300 IS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 70.56000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 223 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 CYS A 3 REMARK 465 ASN A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 5 CG OD1 OD2 REMARK 470 GLU A 91 OE1 OE2 REMARK 470 GLU A 101 CD OE1 OE2 REMARK 470 LYS A 151 NZ REMARK 470 LYS A 152 CD CE NZ REMARK 470 GLN A 163 CD OE1 NE2 REMARK 470 LYS A 187 CE NZ REMARK 470 LYS A 196 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 81 9.83 -152.74 REMARK 500 VAL A 165 -62.11 -107.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 376113 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2QML A 1 197 UNP Q9K9M4 Q9K9M4_BACHD 1 197 SEQADV 2QML GLY A 0 UNP Q9K9M4 EXPRESSION TAG SEQADV 2QML MSE A 1 UNP Q9K9M4 MET 1 MODIFIED RESIDUE SEQADV 2QML MSE A 28 UNP Q9K9M4 MET 28 MODIFIED RESIDUE SEQADV 2QML MSE A 33 UNP Q9K9M4 MET 33 MODIFIED RESIDUE SEQADV 2QML MSE A 38 UNP Q9K9M4 MET 38 MODIFIED RESIDUE SEQADV 2QML MSE A 72 UNP Q9K9M4 MET 72 MODIFIED RESIDUE SEQADV 2QML MSE A 81 UNP Q9K9M4 MET 81 MODIFIED RESIDUE SEQADV 2QML MSE A 130 UNP Q9K9M4 MET 130 MODIFIED RESIDUE SEQADV 2QML MSE A 153 UNP Q9K9M4 MET 153 MODIFIED RESIDUE SEQADV 2QML MSE A 178 UNP Q9K9M4 MET 178 MODIFIED RESIDUE SEQADV 2QML MSE A 194 UNP Q9K9M4 MET 194 MODIFIED RESIDUE SEQRES 1 A 198 GLY MSE LYS CYS ASN ASP LYS LEU ALA PRO PHE GLU VAL SEQRES 2 A 198 PHE ASP HIS VAL VAL ASN LYS LYS LEU SER PHE ARG HIS SEQRES 3 A 198 VAL THR MSE ASP ASP VAL ASP MSE LEU HIS SER TRP MSE SEQRES 4 A 198 HIS GLU GLU HIS VAL ILE PRO TYR TRP LYS LEU ASN ILE SEQRES 5 A 198 PRO LEU VAL ASP TYR LYS LYS HIS LEU GLN THR PHE LEU SEQRES 6 A 198 ASN ASP ASP HIS GLN THR LEU MSE VAL GLY ALA ILE ASN SEQRES 7 A 198 GLY VAL PRO MSE SER TYR TRP GLU SER TYR TRP VAL LYS SEQRES 8 A 198 GLU ASP ILE ILE ALA ASN TYR TYR PRO PHE GLU GLU HIS SEQRES 9 A 198 ASP GLN GLY ILE HIS LEU LEU ILE GLY PRO GLN GLU TYR SEQRES 10 A 198 LEU GLY GLN GLY LEU ILE TYR PRO LEU LEU LEU ALA ILE SEQRES 11 A 198 MSE GLN GLN LYS PHE GLN GLU PRO ASP THR ASN THR ILE SEQRES 12 A 198 VAL ALA GLU PRO ASP ARG ARG ASN LYS LYS MSE ILE HIS SEQRES 13 A 198 VAL PHE LYS LYS CYS GLY PHE GLN PRO VAL LYS GLU VAL SEQRES 14 A 198 GLU LEU PRO ASP LYS ILE GLY LEU LEU MSE LYS CYS GLU SEQRES 15 A 198 GLN ASN VAL PHE GLU LYS ARG TRP SER ASP TRP LYS MSE SEQRES 16 A 198 ASN LYS PHE MODRES 2QML MSE A 28 MET SELENOMETHIONINE MODRES 2QML MSE A 33 MET SELENOMETHIONINE MODRES 2QML MSE A 38 MET SELENOMETHIONINE MODRES 2QML MSE A 72 MET SELENOMETHIONINE MODRES 2QML MSE A 81 MET SELENOMETHIONINE MODRES 2QML MSE A 130 MET SELENOMETHIONINE MODRES 2QML MSE A 153 MET SELENOMETHIONINE MODRES 2QML MSE A 178 MET SELENOMETHIONINE MODRES 2QML MSE A 194 MET SELENOMETHIONINE HET MSE A 28 8 HET MSE A 33 8 HET MSE A 38 8 HET MSE A 72 16 HET MSE A 81 8 HET MSE A 130 16 HET MSE A 153 8 HET MSE A 178 8 HET MSE A 194 8 HET CL A 198 1 HET CL A 199 1 HET CL A 200 1 HET GOL A 201 6 HET GOL A 202 6 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 CL 3(CL 1-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *168(H2 O) HELIX 1 1 THR A 27 ASP A 29 5 3 HELIX 2 2 ASP A 30 MSE A 38 1 9 HELIX 3 3 VAL A 43 LYS A 48 1 6 HELIX 4 4 PRO A 52 ASN A 65 1 14 HELIX 5 5 LYS A 90 TYR A 98 5 9 HELIX 6 6 PRO A 113 LEU A 117 5 5 HELIX 7 7 LEU A 121 GLN A 135 1 15 HELIX 8 8 ASN A 150 CYS A 160 1 11 HELIX 9 9 GLN A 182 MSE A 194 1 13 SHEET 1 A 8 PHE A 10 ASP A 14 0 SHEET 2 A 8 LYS A 19 HIS A 25 -1 O LEU A 21 N VAL A 12 SHEET 3 A 8 GLN A 69 ILE A 76 -1 O ALA A 75 N SER A 22 SHEET 4 A 8 VAL A 79 TRP A 88 -1 O SER A 86 N THR A 70 SHEET 5 A 8 GLN A 105 ILE A 111 -1 O GLY A 106 N TYR A 87 SHEET 6 A 8 THR A 141 ALA A 144 1 O VAL A 143 N GLN A 105 SHEET 7 A 8 ILE A 174 GLU A 181 -1 O CYS A 180 N ILE A 142 SHEET 8 A 8 GLN A 163 GLU A 169 -1 N VAL A 165 O LEU A 177 LINK C THR A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N ASP A 29 1555 1555 1.34 LINK C ASP A 32 N MSE A 33 1555 1555 1.32 LINK C MSE A 33 N LEU A 34 1555 1555 1.32 LINK C TRP A 37 N MSE A 38 1555 1555 1.35 LINK C MSE A 38 N HIS A 39 1555 1555 1.32 LINK C LEU A 71 N AMSE A 72 1555 1555 1.33 LINK C LEU A 71 N BMSE A 72 1555 1555 1.33 LINK C AMSE A 72 N VAL A 73 1555 1555 1.33 LINK C BMSE A 72 N VAL A 73 1555 1555 1.34 LINK C PRO A 80 N MSE A 81 1555 1555 1.32 LINK C MSE A 81 N SER A 82 1555 1555 1.33 LINK C ILE A 129 N BMSE A 130 1555 1555 1.33 LINK C ILE A 129 N AMSE A 130 1555 1555 1.34 LINK C BMSE A 130 N GLN A 131 1555 1555 1.33 LINK C AMSE A 130 N GLN A 131 1555 1555 1.32 LINK C LYS A 152 N MSE A 153 1555 1555 1.34 LINK C MSE A 153 N ILE A 154 1555 1555 1.32 LINK C LEU A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N LYS A 179 1555 1555 1.33 LINK C LYS A 193 N MSE A 194 1555 1555 1.33 LINK C MSE A 194 N ASN A 195 1555 1555 1.33 SITE 1 AC1 4 PHE A 13 ASP A 14 HIS A 15 LYS A 193 SITE 1 AC2 4 ASP A 147 ASN A 150 GOL A 202 HOH A 236 SITE 1 AC3 4 PHE A 13 LYS A 193 HOH A 223 HOH A 279 SITE 1 AC4 10 ASP A 5 LEU A 7 GLN A 69 THR A 70 SITE 2 AC4 10 SER A 86 TYR A 87 TRP A 88 GLN A 105 SITE 3 AC4 10 HOH A 318 HOH A 370 SITE 1 AC5 8 HIS A 108 LEU A 109 GLU A 145 PRO A 146 SITE 2 AC5 8 MSE A 153 PHE A 157 LYS A 173 CL A 199 CRYST1 80.780 80.780 70.560 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012379 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014172 0.00000