HEADER LIGASE 16-JUL-07 2QMO TITLE CRYSTAL STRUCTURE OF DETHIOBIOTIN SYNTHETASE (BIOD) FROM HELICOBACTER TITLE 2 PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DETHIOBIOTIN SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DETHIOBIOTIN SYNTHASE, DTB SYNTHETASE, DTBS; COMPND 5 EC: 6.3.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 ATCC: 700392; SOURCE 6 GENE: BIOD, HP_0029; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: P11 KEYWDS DETHIOBIOTIN SYNTHETASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 ATP-BINDING, BIOTIN BIOSYNTHESIS, LIGASE, MAGNESIUM, NUCLEOTIDE- KEYWDS 4 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.CHRUSZCZ,X.XU,M.CUFF,M.CYMBOROWSKI,H.ZHENG,A.SAVCHENKO,A.EDWARDS, AUTHOR 2 A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 11 16-OCT-24 2QMO 1 REMARK REVDAT 10 13-APR-22 2QMO 1 AUTHOR JRNL REMARK SEQADV REVDAT 10 2 1 LINK REVDAT 9 27-MAR-13 2QMO 1 JRNL REVDAT 8 28-MAR-12 2QMO 1 JRNL REVDAT 7 13-JUL-11 2QMO 1 VERSN REVDAT 6 17-MAR-09 2QMO 1 JRNL REVDAT 5 24-FEB-09 2QMO 1 VERSN REVDAT 4 10-JUN-08 2QMO 1 JRNL REVDAT 3 20-NOV-07 2QMO 1 JRNL REVDAT 2 21-AUG-07 2QMO 1 REMARK REVDAT 1 31-JUL-07 2QMO 0 JRNL AUTH P.J.POREBSKI,M.KLIMECKA,M.CHRUSZCZ,R.A.NICHOLLS,K.MURZYN, JRNL AUTH 2 M.E.CUFF,X.XU,M.CYMBOROWSKI,G.N.MURSHUDOV,A.SAVCHENKO, JRNL AUTH 3 A.EDWARDS,W.MINOR JRNL TITL STRUCTURAL CHARACTERIZATION OF HELICOBACTER PYLORI JRNL TITL 2 DETHIOBIOTIN SYNTHETASE REVEALS DIFFERENCES BETWEEN FAMILY JRNL TITL 3 MEMBERS. JRNL REF FEBS J. V. 279 1093 2012 JRNL REFN ISSN 1742-464X JRNL PMID 22284390 JRNL DOI 10.1111/J.1742-4658.2012.08506.X REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 35272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1769 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2298 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1729 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 326 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.190 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1849 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1701 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2528 ; 1.715 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3980 ; 0.876 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 5.866 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;35.920 ;25.443 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 332 ;11.294 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;23.228 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 303 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2091 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 347 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 383 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1693 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 937 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 960 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 201 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.105 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 56 ; 0.241 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1400 ; 1.537 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 466 ; 0.356 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1902 ; 1.655 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 742 ; 2.896 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 626 ; 4.139 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 26.6160 9.5830 15.1480 REMARK 3 T TENSOR REMARK 3 T11: -0.0095 T22: -0.0372 REMARK 3 T33: -0.0020 T12: 0.0035 REMARK 3 T13: -0.0148 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.1913 L22: 0.2299 REMARK 3 L33: 1.3927 L12: 0.0637 REMARK 3 L13: 0.2132 L23: -0.1989 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: 0.0404 S13: -0.1815 REMARK 3 S21: -0.0768 S22: 0.0010 S23: 0.0380 REMARK 3 S31: 0.1709 S32: -0.0127 S33: -0.0588 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5960 5.4910 7.4730 REMARK 3 T TENSOR REMARK 3 T11: -0.0031 T22: -0.0446 REMARK 3 T33: -0.0257 T12: 0.0362 REMARK 3 T13: -0.0244 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 3.1778 L22: 0.5989 REMARK 3 L33: 2.4612 L12: 0.3137 REMARK 3 L13: 1.2460 L23: 0.2891 REMARK 3 S TENSOR REMARK 3 S11: 0.1613 S12: 0.2623 S13: -0.3739 REMARK 3 S21: -0.1068 S22: -0.0484 S23: 0.0294 REMARK 3 S31: 0.2864 S32: 0.1082 S33: -0.1129 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 49.0620 12.4710 15.2500 REMARK 3 T TENSOR REMARK 3 T11: -0.0335 T22: 0.0200 REMARK 3 T33: -0.0246 T12: 0.0477 REMARK 3 T13: -0.0037 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 4.9923 L22: 4.3767 REMARK 3 L33: 0.2843 L12: -2.5904 REMARK 3 L13: -0.7114 L23: 0.7719 REMARK 3 S TENSOR REMARK 3 S11: 0.1872 S12: 0.2620 S13: 0.0753 REMARK 3 S21: -0.2477 S22: -0.2695 S23: -0.2831 REMARK 3 S31: 0.0542 S32: 0.2197 S33: 0.0822 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 95 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 35.6970 21.5490 7.2280 REMARK 3 T TENSOR REMARK 3 T11: -0.0273 T22: 0.0124 REMARK 3 T33: -0.0378 T12: -0.0029 REMARK 3 T13: 0.0177 T23: 0.0439 REMARK 3 L TENSOR REMARK 3 L11: 14.0341 L22: 3.1263 REMARK 3 L33: 5.0128 L12: 0.4352 REMARK 3 L13: 7.4310 L23: -0.0497 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: 0.4957 S13: 0.1761 REMARK 3 S21: -0.0524 S22: -0.0682 S23: -0.1106 REMARK 3 S31: 0.0412 S32: 0.1172 S33: 0.0363 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6780 19.5630 15.5570 REMARK 3 T TENSOR REMARK 3 T11: -0.0329 T22: -0.0334 REMARK 3 T33: -0.0141 T12: 0.0060 REMARK 3 T13: 0.0058 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.7296 L22: 0.8111 REMARK 3 L33: 0.9701 L12: -0.2496 REMARK 3 L13: 0.8431 L23: -0.2328 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.1019 S13: 0.1084 REMARK 3 S21: -0.0185 S22: -0.0040 S23: -0.0213 REMARK 3 S31: -0.0471 S32: 0.0480 S33: 0.0217 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 142 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6270 14.4810 30.7540 REMARK 3 T TENSOR REMARK 3 T11: -0.0209 T22: -0.0284 REMARK 3 T33: 0.0044 T12: 0.0115 REMARK 3 T13: 0.0017 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.9718 L22: 0.0383 REMARK 3 L33: 1.5518 L12: 0.1537 REMARK 3 L13: 0.2767 L23: -0.0997 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -0.0180 S13: 0.0013 REMARK 3 S21: 0.0505 S22: -0.0060 S23: -0.0468 REMARK 3 S31: -0.0793 S32: -0.0404 S33: 0.0016 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5090 14.8960 37.6540 REMARK 3 T TENSOR REMARK 3 T11: -0.0527 T22: -0.0276 REMARK 3 T33: -0.0029 T12: 0.0040 REMARK 3 T13: 0.0028 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.4622 L22: 2.4960 REMARK 3 L33: 1.6210 L12: 0.3319 REMARK 3 L13: -0.0215 L23: 0.1369 REMARK 3 S TENSOR REMARK 3 S11: 0.0487 S12: -0.0182 S13: 0.0629 REMARK 3 S21: 0.0850 S22: -0.0671 S23: -0.0736 REMARK 3 S31: -0.0811 S32: -0.0908 S33: 0.0185 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1030 15.3550 21.2560 REMARK 3 T TENSOR REMARK 3 T11: -0.0573 T22: -0.0029 REMARK 3 T33: -0.0036 T12: 0.0005 REMARK 3 T13: 0.0051 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.0240 L22: 4.9151 REMARK 3 L33: 3.0065 L12: -0.1837 REMARK 3 L13: 0.1237 L23: -3.0266 REMARK 3 S TENSOR REMARK 3 S11: 0.0886 S12: 0.1171 S13: 0.0474 REMARK 3 S21: -0.0684 S22: 0.0599 S23: 0.1763 REMARK 3 S31: 0.0283 S32: -0.1245 S33: -0.1485 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. COOT PROGRAM HAS ALSO BEEN USED IN REFINEMENT. REMARK 4 REMARK 4 2QMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35286 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 48.7540 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44400 REMARK 200 R SYM FOR SHELL (I) : 0.44400 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.04750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.72700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.04750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.72700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 68.23563 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 68.24288 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 62 105.11 -161.69 REMARK 500 SER A 79 -173.72 -65.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5858 RELATED DB: TARGETDB DBREF 2QMO A 1 218 UNP O24872 BIOD_HELPY 1 218 SEQADV 2QMO GLY A -1 UNP O24872 EXPRESSION TAG SEQADV 2QMO HIS A 0 UNP O24872 EXPRESSION TAG SEQADV 2QMO MSE A 1 UNP O24872 MET 1 MODIFIED RESIDUE SEQADV 2QMO MSE A 131 UNP O24872 MET 131 MODIFIED RESIDUE SEQADV 2QMO MSE A 142 UNP O24872 MET 142 MODIFIED RESIDUE SEQADV 2QMO MSE A 213 UNP O24872 MET 213 MODIFIED RESIDUE SEQRES 1 A 220 GLY HIS MSE LEU PHE ILE SER ALA THR ASN THR ASN ALA SEQRES 2 A 220 GLY LYS THR THR CYS ALA ARG LEU LEU ALA GLN TYR CYS SEQRES 3 A 220 ASN ALA CYS GLY VAL LYS THR ILE LEU LEU LYS PRO ILE SEQRES 4 A 220 GLU THR GLY VAL ASN ASP ALA ILE ASN HIS SER SER ASP SEQRES 5 A 220 ALA HIS LEU PHE LEU GLN ASP ASN ARG LEU LEU ASP ARG SEQRES 6 A 220 SER LEU THR LEU LYS ASP ILE SER PHE TYR ARG TYR HIS SEQRES 7 A 220 LYS VAL SER ALA PRO LEU ILE ALA GLN GLN GLU GLU ASP SEQRES 8 A 220 PRO ASN ALA PRO ILE ASP THR ASP ASN LEU THR GLN ARG SEQRES 9 A 220 LEU HIS ASN PHE THR LYS THR TYR ASP LEU VAL ILE VAL SEQRES 10 A 220 GLU GLY ALA GLY GLY LEU CYS VAL PRO ILE THR LEU GLU SEQRES 11 A 220 GLU ASN MSE LEU ASP PHE ALA LEU LYS LEU LYS ALA LYS SEQRES 12 A 220 MSE LEU LEU ILE SER HIS ASP ASN LEU GLY LEU ILE ASN SEQRES 13 A 220 ASP CYS LEU LEU ASN ASP PHE LEU LEU LYS SER HIS GLN SEQRES 14 A 220 LEU ASP TYR LYS ILE ALA ILE ASN LEU LYS GLY ASN ASN SEQRES 15 A 220 THR ALA PHE HIS SER ILE SER LEU PRO TYR ILE GLU LEU SEQRES 16 A 220 PHE ASN THR ARG SER ASN ASN PRO ILE VAL ILE PHE GLN SEQRES 17 A 220 GLN SER LEU LYS VAL LEU MSE SER PHE ALA LEU LYS MODRES 2QMO MSE A 1 MET SELENOMETHIONINE MODRES 2QMO MSE A 131 MET SELENOMETHIONINE MODRES 2QMO MSE A 142 MET SELENOMETHIONINE MODRES 2QMO MSE A 213 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 131 8 HET MSE A 142 8 HET MSE A 213 8 HET CL A 301 1 HET CL A 302 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 CL 2(CL 1-) FORMUL 4 HOH *326(H2 O) HELIX 1 1 GLY A 12 CYS A 27 1 16 HELIX 2 2 SER A 49 ARG A 59 1 11 HELIX 3 3 THR A 66 SER A 71 1 6 HELIX 4 4 ALA A 80 ASP A 89 1 10 HELIX 5 5 ASP A 95 PHE A 106 1 12 HELIX 6 6 THR A 107 THR A 109 5 3 HELIX 7 7 ASN A 130 LYS A 139 1 10 HELIX 8 8 GLY A 151 SER A 165 1 15 HELIX 9 9 ALA A 182 SER A 187 1 6 HELIX 10 10 SER A 187 SER A 198 1 12 HELIX 11 11 SER A 208 LYS A 218 1 11 SHEET 1 A 6 THR A 31 LEU A 34 0 SHEET 2 A 6 LEU A 112 GLU A 116 1 O GLU A 116 N LEU A 34 SHEET 3 A 6 MSE A 1 ALA A 6 1 N LEU A 2 O VAL A 115 SHEET 4 A 6 LYS A 141 SER A 146 1 O LYS A 141 N PHE A 3 SHEET 5 A 6 TYR A 170 ILE A 174 1 O LYS A 171 N LEU A 144 SHEET 6 A 6 VAL A 203 ILE A 204 1 O VAL A 203 N ILE A 174 SHEET 1 B 2 ILE A 37 GLU A 38 0 SHEET 2 B 2 TYR A 73 ARG A 74 1 O TYR A 73 N GLU A 38 LINK C HIS A 0 N MSE A 1 1555 1555 1.32 LINK C MSE A 1 N LEU A 2 1555 1555 1.33 LINK C ASN A 130 N MSE A 131 1555 1555 1.34 LINK C MSE A 131 N LEU A 132 1555 1555 1.32 LINK C LYS A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N LEU A 143 1555 1555 1.34 LINK C LEU A 212 N MSE A 213 1555 1555 1.34 LINK C MSE A 213 N SER A 214 1555 1555 1.35 CISPEP 1 GLY A -1 HIS A 0 0 -3.27 SITE 1 AC1 4 GLY A 151 LEU A 152 ILE A 153 SER A 187 SITE 1 AC2 3 LYS A 13 THR A 14 HOH A 517 CRYST1 82.095 37.454 69.636 90.00 101.48 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012180 0.000000 0.002470 0.00000 SCALE2 0.000000 0.026700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014650 0.00000