HEADER TRANSLATION 17-JUL-07 2QMU TITLE STRUCTURE OF AN ARCHAEAL HETEROTRIMERIC INITIATION FACTOR 2 REVEALS A TITLE 2 NUCLEOTIDE STATE BETWEEN THE GTP AND THE GDP STATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION INITIATION FACTOR 2 GAMMA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EIF-2-GAMMA, AIF2- GAMMA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSLATION INITIATION FACTOR 2 ALPHA SUBUNIT; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: AIF2-ALPHA3 DOMAIN; COMPND 10 SYNONYM: EIF-2-ALPHA, AIF2- ALPHA; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT; COMPND 14 CHAIN: C; COMPND 15 SYNONYM: EIF-2-BETA, AIF2-BETA; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 GENE: EIF2G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3ALPA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 13 ORGANISM_TAXID: 273057; SOURCE 14 STRAIN: P2; SOURCE 15 GENE: EIF2A; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA-DE3; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET3ALPA; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 23 ORGANISM_TAXID: 273057; SOURCE 24 STRAIN: P2; SOURCE 25 GENE: EIF2B; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: ROSETTA-DE3; SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PET3ALPA KEYWDS INITIATION OF TRANSLATION, GTP-BINDING, INITIATION FACTOR, KEYWDS 2 NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS, RNA-BINDING, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR L.YATIME,Y.MECHULAM,S.BLANQUET,E.SCHMITT REVDAT 6 06-NOV-24 2QMU 1 REMARK REVDAT 5 30-AUG-23 2QMU 1 REMARK SEQADV REVDAT 4 13-JUL-11 2QMU 1 VERSN REVDAT 3 24-FEB-09 2QMU 1 VERSN REVDAT 2 11-DEC-07 2QMU 1 JRNL REVDAT 1 06-NOV-07 2QMU 0 JRNL AUTH L.YATIME,Y.MECHULAM,S.BLANQUET,E.SCHMITT JRNL TITL STRUCTURE OF AN ARCHAEAL HETEROTRIMERIC INITIATION FACTOR 2 JRNL TITL 2 REVEALS A NUCLEOTIDE STATE BETWEEN THE GTP AND THE GDP JRNL TITL 3 STATES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 18445 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 18000047 JRNL DOI 10.1073/PNAS.0706784104 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 20674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.25 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 53 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4989 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -9.77200 REMARK 3 B22 (A**2) : -9.77200 REMARK 3 B33 (A**2) : 19.54500 REMARK 3 B12 (A**2) : -27.04800 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QMU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.007 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21823 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33800 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: CHAIN A FROM 2AHO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM CITRATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.63267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.81633 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.81633 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.63267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4590 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15010 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 107.63267 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C 2 REMARK 465 ARG C 23 REMARK 465 LYS C 24 REMARK 465 GLU C 25 REMARK 465 GLY C 26 REMARK 465 THR C 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 258 CG OD1 ND2 REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 LYS B 266 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU B 212 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 LEU B 214 N - CA - C ANGL. DEV. = -22.4 DEGREES REMARK 500 SER C 29 N - CA - C ANGL. DEV. = -21.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 17 -146.52 -80.59 REMARK 500 ASP A 19 -0.84 70.82 REMARK 500 LYS A 22 40.23 -70.73 REMARK 500 THR A 23 -35.49 -147.64 REMARK 500 SER A 35 12.38 -68.50 REMARK 500 HIS A 37 30.14 -98.14 REMARK 500 LYS A 42 -127.66 -178.26 REMARK 500 GLU A 66 1.51 -54.27 REMARK 500 SER A 73 174.96 -51.85 REMARK 500 CYS A 74 17.80 -151.92 REMARK 500 SER A 76 3.46 -51.77 REMARK 500 ASP A 80 -21.84 -146.00 REMARK 500 LEU A 86 -64.89 -92.12 REMARK 500 VAL A 99 -71.17 -61.16 REMARK 500 LEU A 100 -3.07 -43.40 REMARK 500 MET A 101 -36.91 -39.64 REMARK 500 PHE A 133 -71.43 -60.97 REMARK 500 ASP A 152 27.08 -73.78 REMARK 500 VAL A 153 21.89 -158.98 REMARK 500 LYS A 171 154.15 -47.75 REMARK 500 ILE A 180 32.96 -147.47 REMARK 500 ILE A 181 92.04 -36.23 REMARK 500 ALA A 185 -38.26 -39.78 REMARK 500 LEU A 209 22.10 -73.17 REMARK 500 ASN A 224 118.67 -24.55 REMARK 500 THR A 228 128.27 -26.50 REMARK 500 GLN A 229 178.62 -56.20 REMARK 500 LEU A 246 148.56 -177.71 REMARK 500 VAL A 249 167.65 -44.69 REMARK 500 ASP A 250 20.00 48.99 REMARK 500 GLU A 262 74.07 -115.89 REMARK 500 PRO A 271 142.63 -31.24 REMARK 500 GLU A 288 133.83 -177.44 REMARK 500 PRO A 291 141.51 -31.62 REMARK 500 THR A 299 -162.27 -107.29 REMARK 500 LYS A 307 -19.55 -47.36 REMARK 500 LEU A 311 12.31 -67.52 REMARK 500 ALA A 342 -138.71 -99.03 REMARK 500 LYS A 343 -39.73 -152.84 REMARK 500 MET A 345 93.52 -47.68 REMARK 500 LYS A 347 155.93 -47.71 REMARK 500 LYS A 354 -6.92 55.75 REMARK 500 VAL A 361 80.46 -152.45 REMARK 500 VAL A 373 66.55 -153.19 REMARK 500 LEU B 191 63.28 -117.01 REMARK 500 VAL B 193 -30.61 -38.93 REMARK 500 GLU B 198 -73.31 -58.28 REMARK 500 SER B 201 25.52 -65.79 REMARK 500 LYS B 202 -51.49 -143.52 REMARK 500 LEU B 204 55.80 -107.12 REMARK 500 REMARK 500 THIS ENTRY HAS 74 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 414 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 106 SG REMARK 620 2 CYS C 109 SG 121.5 REMARK 620 3 CYS C 127 SG 114.9 113.5 REMARK 620 4 CYS C 130 SG 90.9 122.6 87.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 417 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QN6 RELATED DB: PDB DBREF 2QMU A 2 415 UNP Q980A5 IF2G_SULSO 2 415 DBREF 2QMU B 175 266 UNP Q97Z79 IF2A_SULSO 175 266 DBREF 2QMU C 2 139 UNP Q97W59 IF2B_SULSO 2 139 SEQADV 2QMU MET B 174 UNP Q97Z79 EXPRESSION TAG SEQRES 1 A 414 ALA TRP PRO LYS VAL GLN PRO GLU VAL ASN ILE GLY VAL SEQRES 2 A 414 VAL GLY HIS VAL ASP HIS GLY LYS THR THR LEU VAL GLN SEQRES 3 A 414 ALA ILE THR GLY ILE TRP THR SER LYS HIS SER GLU GLU SEQRES 4 A 414 LEU LYS ARG GLY MET THR ILE LYS LEU GLY TYR ALA GLU SEQRES 5 A 414 THR ASN ILE GLY VAL CYS GLU SER CYS LYS LYS PRO GLU SEQRES 6 A 414 ALA TYR VAL THR GLU PRO SER CYS LYS SER CYS GLY SER SEQRES 7 A 414 ASP ASP GLU PRO LYS PHE LEU ARG ARG ILE SER PHE ILE SEQRES 8 A 414 ASP ALA PRO GLY HIS GLU VAL LEU MET ALA THR MET LEU SEQRES 9 A 414 SER GLY ALA ALA LEU MET ASP GLY ALA ILE LEU VAL VAL SEQRES 10 A 414 ALA ALA ASN GLU PRO PHE PRO GLN PRO GLN THR ARG GLU SEQRES 11 A 414 HIS PHE VAL ALA LEU GLY ILE ILE GLY VAL LYS ASN LEU SEQRES 12 A 414 ILE ILE VAL GLN ASN LYS VAL ASP VAL VAL SER LYS GLU SEQRES 13 A 414 GLU ALA LEU SER GLN TYR ARG GLN ILE LYS GLN PHE THR SEQRES 14 A 414 LYS GLY THR TRP ALA GLU ASN VAL PRO ILE ILE PRO VAL SEQRES 15 A 414 SER ALA LEU HIS LYS ILE ASN ILE ASP SER LEU ILE GLU SEQRES 16 A 414 GLY ILE GLU GLU TYR ILE LYS THR PRO TYR ARG ASP LEU SEQRES 17 A 414 SER GLN LYS PRO VAL MET LEU VAL ILE ARG SER PHE ASP SEQRES 18 A 414 VAL ASN LYS PRO GLY THR GLN PHE ASN GLU LEU LYS GLY SEQRES 19 A 414 GLY VAL ILE GLY GLY SER ILE ILE GLN GLY LEU PHE LYS SEQRES 20 A 414 VAL ASP GLN GLU ILE LYS VAL LEU PRO GLY LEU ARG VAL SEQRES 21 A 414 GLU LYS GLN GLY LYS VAL SER TYR GLU PRO ILE PHE THR SEQRES 22 A 414 LYS ILE SER SER ILE ARG PHE GLY ASP GLU GLU PHE LYS SEQRES 23 A 414 GLU ALA LYS PRO GLY GLY LEU VAL ALA ILE GLY THR TYR SEQRES 24 A 414 LEU ASP PRO SER LEU THR LYS ALA ASP ASN LEU LEU GLY SEQRES 25 A 414 SER ILE ILE THR LEU ALA ASP ALA GLU VAL PRO VAL LEU SEQRES 26 A 414 TRP ASN ILE ARG ILE LYS TYR ASN LEU LEU GLU ARG VAL SEQRES 27 A 414 VAL GLY ALA LYS GLU MET LEU LYS VAL ASP PRO ILE ARG SEQRES 28 A 414 ALA LYS GLU THR LEU MET LEU SER VAL GLY SER SER THR SEQRES 29 A 414 THR LEU GLY ILE VAL THR SER VAL LYS LYS ASP GLU ILE SEQRES 30 A 414 GLU VAL GLU LEU ARG ARG PRO VAL ALA VAL TRP SER ASN SEQRES 31 A 414 ASN ILE ARG THR VAL ILE SER ARG GLN ILE ALA GLY ARG SEQRES 32 A 414 TRP ARG MET ILE GLY TRP GLY LEU VAL GLU ILE SEQRES 1 B 93 MET ARG LYS VAL LYS MET SER GLY LEU ILE THR VAL ARG SEQRES 2 B 93 THR ASN GLU PRO LEU GLY VAL GLU LYS ILE LYS GLU VAL SEQRES 3 B 93 ILE SER LYS ALA LEU GLU ASN ILE GLU GLN ASP TYR GLU SEQRES 4 B 93 SER LEU LEU ASN ILE LYS ILE TYR THR ILE GLY ALA PRO SEQRES 5 B 93 ARG TYR ARG VAL ASP VAL VAL GLY THR ASN PRO LYS GLU SEQRES 6 B 93 ALA SER GLU ALA LEU ASN GLN ILE ILE SER ASN LEU ILE SEQRES 7 B 93 LYS ILE GLY LYS GLU GLU ASN VAL ASP ILE SER VAL VAL SEQRES 8 B 93 LYS LYS SEQRES 1 C 138 SER SER GLU LYS GLU TYR VAL GLU MET LEU ASP ARG LEU SEQRES 2 C 138 TYR SER LYS LEU PRO GLU LYS GLY ARG LYS GLU GLY THR SEQRES 3 C 138 GLN SER LEU PRO ASN MET ILE ILE LEU ASN ILE GLY ASN SEQRES 4 C 138 THR THR ILE ILE ARG ASN PHE ALA GLU TYR CYS ASP ARG SEQRES 5 C 138 ILE ARG ARG GLU ASP LYS ILE CYS MET LYS TYR LEU LEU SEQRES 6 C 138 LYS GLU LEU ALA ALA PRO GLY ASN VAL ASP ASP LYS GLY SEQRES 7 C 138 GLU LEU VAL ILE GLN GLY LYS PHE SER SER GLN VAL ILE SEQRES 8 C 138 ASN THR LEU MET GLU ARG PHE LEU LYS ALA TYR VAL GLU SEQRES 9 C 138 CYS SER THR CYS LYS SER LEU ASP THR ILE LEU LYS LYS SEQRES 10 C 138 GLU LYS LYS SER TRP TYR ILE VAL CYS LEU ALA CYS GLY SEQRES 11 C 138 ALA GLN THR PRO VAL LYS PRO LEU HET PO4 A 416 5 HET GDP A 417 28 HET ZN C 414 1 HETNAM PO4 PHOSPHATE ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION FORMUL 4 PO4 O4 P 3- FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 ZN ZN 2+ FORMUL 7 HOH *(H2 O) HELIX 1 1 THR A 23 GLY A 31 1 9 HELIX 2 2 THR A 34 SER A 38 5 5 HELIX 3 3 CYS A 74 GLY A 78 5 5 HELIX 4 4 GLU A 98 ALA A 102 5 5 HELIX 5 5 THR A 103 ALA A 109 1 7 HELIX 6 6 GLN A 126 GLY A 140 1 15 HELIX 7 7 SER A 155 LYS A 171 1 17 HELIX 8 8 ASN A 190 TYR A 201 1 12 HELIX 9 9 ASP A 302 LYS A 307 1 6 HELIX 10 10 LEU B 191 LEU B 204 1 14 HELIX 11 11 ASN B 235 GLU B 256 1 22 HELIX 12 12 SER C 3 SER C 16 1 14 HELIX 13 13 ASN C 46 ARG C 53 1 8 HELIX 14 14 GLU C 57 ALA C 70 1 14 HELIX 15 15 SER C 88 VAL C 104 1 17 SHEET 1 A 6 TYR A 68 VAL A 69 0 SHEET 2 A 6 GLY A 50 VAL A 58 -1 N GLY A 57 O VAL A 69 SHEET 3 A 6 ARG A 87 ASP A 93 -1 O ASP A 93 N GLY A 50 SHEET 4 A 6 VAL A 10 GLY A 16 1 N VAL A 14 O ILE A 92 SHEET 5 A 6 GLY A 113 ALA A 119 1 O ILE A 115 N VAL A 15 SHEET 6 A 6 LEU A 144 ILE A 145 1 O ILE A 145 N LEU A 116 SHEET 1 B 6 TYR A 68 VAL A 69 0 SHEET 2 B 6 GLY A 50 VAL A 58 -1 N GLY A 57 O VAL A 69 SHEET 3 B 6 ARG A 87 ASP A 93 -1 O ASP A 93 N GLY A 50 SHEET 4 B 6 VAL A 10 GLY A 16 1 N VAL A 14 O ILE A 92 SHEET 5 B 6 GLY A 113 ALA A 119 1 O ILE A 115 N VAL A 15 SHEET 6 B 6 GLN A 148 ASN A 149 1 O ASN A 149 N VAL A 118 SHEET 1 C 6 TYR A 269 LYS A 275 0 SHEET 2 C 6 GLU A 252 ARG A 260 -1 N ILE A 253 O THR A 274 SHEET 3 C 6 ILE A 315 LEU A 318 -1 O THR A 317 N LYS A 254 SHEET 4 C 6 VAL A 214 PHE A 221 -1 N MET A 215 O ILE A 316 SHEET 5 C 6 VAL A 237 GLN A 244 -1 O ILE A 243 N VAL A 214 SHEET 6 C 6 VAL A 295 GLY A 298 -1 O ILE A 297 N ILE A 238 SHEET 1 D 2 PHE A 247 LYS A 248 0 SHEET 2 D 2 GLU A 288 ALA A 289 -1 O ALA A 289 N PHE A 247 SHEET 1 E 2 ILE A 279 PHE A 281 0 SHEET 2 E 2 GLU A 284 PHE A 286 -1 O GLU A 284 N PHE A 281 SHEET 1 F 7 VAL A 325 ILE A 331 0 SHEET 2 F 7 GLU A 377 ALA A 387 -1 O LEU A 382 N TRP A 327 SHEET 3 F 7 SER A 364 LYS A 374 -1 N THR A 371 O GLU A 379 SHEET 4 F 7 THR A 356 VAL A 361 -1 N LEU A 359 O THR A 366 SHEET 5 F 7 THR A 395 GLN A 400 -1 O SER A 398 N MET A 358 SHEET 6 F 7 TRP A 405 GLY A 411 -1 O GLY A 409 N ILE A 397 SHEET 7 F 7 ASN A 334 LEU A 335 -1 N ASN A 334 O TRP A 410 SHEET 1 G 4 ASN B 216 THR B 221 0 SHEET 2 G 4 ARG B 226 VAL B 232 -1 O ARG B 228 N TYR B 220 SHEET 3 G 4 LEU B 182 ARG B 186 -1 N ILE B 183 O TYR B 227 SHEET 4 G 4 ASP B 260 VAL B 264 -1 O VAL B 264 N LEU B 182 SHEET 1 H 4 ILE C 35 ASN C 37 0 SHEET 2 H 4 THR C 42 ILE C 44 -1 O ILE C 43 N LEU C 36 SHEET 3 H 4 LEU C 81 ILE C 83 -1 O ILE C 83 N THR C 42 SHEET 4 H 4 GLY C 73 VAL C 75 -1 N ASN C 74 O VAL C 82 SHEET 1 I 3 THR C 114 LEU C 116 0 SHEET 2 I 3 TRP C 123 CYS C 127 -1 O VAL C 126 N ILE C 115 SHEET 3 I 3 GLN C 133 VAL C 136 -1 O VAL C 136 N TRP C 123 SSBOND 1 CYS A 59 CYS A 74 1555 1555 2.60 SSBOND 2 CYS A 62 CYS A 77 1555 1555 2.95 LINK SG CYS C 106 ZN ZN C 414 1555 1555 2.37 LINK SG CYS C 109 ZN ZN C 414 1555 1555 2.31 LINK SG CYS C 127 ZN ZN C 414 1555 1555 2.60 LINK SG CYS C 130 ZN ZN C 414 1555 1555 2.29 CISPEP 1 LYS A 64 PRO A 65 0 -3.07 CISPEP 2 PHE A 124 PRO A 125 0 -0.19 CISPEP 3 LEU A 256 PRO A 257 0 -0.20 SITE 1 AC1 4 CYS C 106 CYS C 109 CYS C 127 CYS C 130 SITE 1 AC2 3 HIS A 37 LYS A 48 HOH A 418 SITE 1 AC3 15 ASP A 19 HIS A 20 GLY A 21 LYS A 22 SITE 2 AC3 15 THR A 23 THR A 24 LYS A 36 HIS A 37 SITE 3 AC3 15 ASN A 149 LYS A 150 ASP A 152 SER A 184 SITE 4 AC3 15 ALA A 185 LEU A 186 LYS C 117 CRYST1 118.323 118.323 161.449 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008451 0.004879 0.000000 0.00000 SCALE2 0.000000 0.009759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006194 0.00000 TER 3214 ILE A 415 TER 3935 LYS B 266 TER 4992 LEU C 139 HETATM 4993 P PO4 A 416 -33.546 51.318 50.422 1.00 74.12 P HETATM 4994 O1 PO4 A 416 -32.878 52.797 50.559 1.00 71.83 O HETATM 4995 O2 PO4 A 416 -34.626 51.370 49.283 1.00 72.43 O HETATM 4996 O3 PO4 A 416 -32.441 50.281 50.060 1.00 71.65 O HETATM 4997 O4 PO4 A 416 -34.215 50.962 51.770 1.00 72.23 O HETATM 4998 PB GDP A 417 -39.492 50.582 54.097 1.00 64.53 P HETATM 4999 O1B GDP A 417 -38.389 51.476 54.431 1.00 67.58 O HETATM 5000 O2B GDP A 417 -40.774 51.227 53.734 1.00 64.94 O HETATM 5001 O3B GDP A 417 -39.338 49.696 52.842 1.00 61.94 O HETATM 5002 O3A GDP A 417 -39.932 49.774 55.560 1.00 65.77 O HETATM 5003 PA GDP A 417 -38.871 48.847 56.456 1.00 66.96 P HETATM 5004 O1A GDP A 417 -39.682 47.602 56.531 1.00 67.62 O HETATM 5005 O2A GDP A 417 -37.459 48.667 56.052 1.00 67.49 O HETATM 5006 O5' GDP A 417 -39.090 49.606 57.881 1.00 65.46 O HETATM 5007 C5' GDP A 417 -38.523 50.858 58.300 1.00 62.61 C HETATM 5008 C4' GDP A 417 -38.003 50.802 59.776 1.00 61.95 C HETATM 5009 O4' GDP A 417 -38.995 50.926 60.870 1.00 62.23 O HETATM 5010 C3' GDP A 417 -37.288 49.498 60.215 1.00 62.00 C HETATM 5011 O3' GDP A 417 -36.358 49.950 61.243 1.00 61.75 O HETATM 5012 C2' GDP A 417 -38.409 48.647 60.828 1.00 62.19 C HETATM 5013 O2' GDP A 417 -37.963 47.610 61.692 1.00 60.52 O HETATM 5014 C1' GDP A 417 -39.233 49.689 61.538 1.00 64.23 C HETATM 5015 N9 GDP A 417 -40.720 49.413 61.492 1.00 69.17 N HETATM 5016 C8 GDP A 417 -41.537 48.922 60.503 1.00 71.41 C HETATM 5017 N7 GDP A 417 -42.787 48.830 60.851 1.00 72.29 N HETATM 5018 C5 GDP A 417 -42.829 49.269 62.163 1.00 72.20 C HETATM 5019 C6 GDP A 417 -43.914 49.426 63.090 1.00 73.07 C HETATM 5020 O6 GDP A 417 -45.113 49.151 62.913 1.00 74.62 O HETATM 5021 N1 GDP A 417 -43.483 49.926 64.344 1.00 73.36 N HETATM 5022 C2 GDP A 417 -42.187 50.266 64.667 1.00 72.49 C HETATM 5023 N2 GDP A 417 -42.001 50.725 65.898 1.00 72.44 N HETATM 5024 N3 GDP A 417 -41.146 50.138 63.798 1.00 72.22 N HETATM 5025 C4 GDP A 417 -41.555 49.652 62.593 1.00 71.09 C HETATM 5026 ZN ZN C 414 -31.169 52.564 75.467 1.00 57.88 ZN HETATM 5027 O HOH A 418 -36.937 51.897 48.937 1.00 28.56 O CONECT 442 556 CONECT 463 577 CONECT 556 442 CONECT 577 463 CONECT 4737 5026 CONECT 4756 5026 CONECT 4908 5026 CONECT 4927 5026 CONECT 4993 4994 4995 4996 4997 CONECT 4994 4993 CONECT 4995 4993 CONECT 4996 4993 CONECT 4997 4993 CONECT 4998 4999 5000 5001 5002 CONECT 4999 4998 CONECT 5000 4998 CONECT 5001 4998 CONECT 5002 4998 5003 CONECT 5003 5002 5004 5005 5006 CONECT 5004 5003 CONECT 5005 5003 CONECT 5006 5003 5007 CONECT 5007 5006 5008 CONECT 5008 5007 5009 5010 CONECT 5009 5008 5014 CONECT 5010 5008 5011 5012 CONECT 5011 5010 CONECT 5012 5010 5013 5014 CONECT 5013 5012 CONECT 5014 5009 5012 5015 CONECT 5015 5014 5016 5025 CONECT 5016 5015 5017 CONECT 5017 5016 5018 CONECT 5018 5017 5019 5025 CONECT 5019 5018 5020 5021 CONECT 5020 5019 CONECT 5021 5019 5022 CONECT 5022 5021 5023 5024 CONECT 5023 5022 CONECT 5024 5022 5025 CONECT 5025 5015 5018 5024 CONECT 5026 4737 4756 4908 4927 MASTER 372 0 3 15 40 0 6 6 5024 3 42 51 END