data_2QNL # _entry.id 2QNL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2QNL pdb_00002qnl 10.2210/pdb2qnl/pdb RCSB RCSB043823 ? ? WWPDB D_1000043823 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 376375 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2QNL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-07-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of uncharacterized protein CHU_0679 (YP_677306.1) from Cytophaga hutchinsonii ATCC 33406 at 1.50 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2QNL _cell.length_a 64.800 _cell.length_b 64.800 _cell.length_c 148.870 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QNL _symmetry.Int_Tables_number 178 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 18590.635 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 5 ? ? ? ? 5 water nat water 18.015 250 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)HTQEALFVRLALDAWNTQSSRTDKLIQSLSNEALAVETAPGRNSGTYLLGHLTAVHDA(MSE)LPLLELGDTLY PQLAPVFIQNPDKSGLEKPEINDLRLYWSLVQERLANQFNQLQPADWFNKHAAISREDFLKEPHRNKLSVLINRTNH (MSE)AYHLGQLAYLKK ; _entity_poly.pdbx_seq_one_letter_code_can ;GMHTQEALFVRLALDAWNTQSSRTDKLIQSLSNEALAVETAPGRNSGTYLLGHLTAVHDAMLPLLELGDTLYPQLAPVFI QNPDKSGLEKPEINDLRLYWSLVQERLANQFNQLQPADWFNKHAAISREDFLKEPHRNKLSVLINRTNHMAYHLGQLAYL KK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 376375 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 HIS n 1 4 THR n 1 5 GLN n 1 6 GLU n 1 7 ALA n 1 8 LEU n 1 9 PHE n 1 10 VAL n 1 11 ARG n 1 12 LEU n 1 13 ALA n 1 14 LEU n 1 15 ASP n 1 16 ALA n 1 17 TRP n 1 18 ASN n 1 19 THR n 1 20 GLN n 1 21 SER n 1 22 SER n 1 23 ARG n 1 24 THR n 1 25 ASP n 1 26 LYS n 1 27 LEU n 1 28 ILE n 1 29 GLN n 1 30 SER n 1 31 LEU n 1 32 SER n 1 33 ASN n 1 34 GLU n 1 35 ALA n 1 36 LEU n 1 37 ALA n 1 38 VAL n 1 39 GLU n 1 40 THR n 1 41 ALA n 1 42 PRO n 1 43 GLY n 1 44 ARG n 1 45 ASN n 1 46 SER n 1 47 GLY n 1 48 THR n 1 49 TYR n 1 50 LEU n 1 51 LEU n 1 52 GLY n 1 53 HIS n 1 54 LEU n 1 55 THR n 1 56 ALA n 1 57 VAL n 1 58 HIS n 1 59 ASP n 1 60 ALA n 1 61 MSE n 1 62 LEU n 1 63 PRO n 1 64 LEU n 1 65 LEU n 1 66 GLU n 1 67 LEU n 1 68 GLY n 1 69 ASP n 1 70 THR n 1 71 LEU n 1 72 TYR n 1 73 PRO n 1 74 GLN n 1 75 LEU n 1 76 ALA n 1 77 PRO n 1 78 VAL n 1 79 PHE n 1 80 ILE n 1 81 GLN n 1 82 ASN n 1 83 PRO n 1 84 ASP n 1 85 LYS n 1 86 SER n 1 87 GLY n 1 88 LEU n 1 89 GLU n 1 90 LYS n 1 91 PRO n 1 92 GLU n 1 93 ILE n 1 94 ASN n 1 95 ASP n 1 96 LEU n 1 97 ARG n 1 98 LEU n 1 99 TYR n 1 100 TRP n 1 101 SER n 1 102 LEU n 1 103 VAL n 1 104 GLN n 1 105 GLU n 1 106 ARG n 1 107 LEU n 1 108 ALA n 1 109 ASN n 1 110 GLN n 1 111 PHE n 1 112 ASN n 1 113 GLN n 1 114 LEU n 1 115 GLN n 1 116 PRO n 1 117 ALA n 1 118 ASP n 1 119 TRP n 1 120 PHE n 1 121 ASN n 1 122 LYS n 1 123 HIS n 1 124 ALA n 1 125 ALA n 1 126 ILE n 1 127 SER n 1 128 ARG n 1 129 GLU n 1 130 ASP n 1 131 PHE n 1 132 LEU n 1 133 LYS n 1 134 GLU n 1 135 PRO n 1 136 HIS n 1 137 ARG n 1 138 ASN n 1 139 LYS n 1 140 LEU n 1 141 SER n 1 142 VAL n 1 143 LEU n 1 144 ILE n 1 145 ASN n 1 146 ARG n 1 147 THR n 1 148 ASN n 1 149 HIS n 1 150 MSE n 1 151 ALA n 1 152 TYR n 1 153 HIS n 1 154 LEU n 1 155 GLY n 1 156 GLN n 1 157 LEU n 1 158 ALA n 1 159 TYR n 1 160 LEU n 1 161 LYS n 1 162 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Cytophaga _entity_src_gen.pdbx_gene_src_gene 'YP_677306.1, CHU_0679' _entity_src_gen.gene_src_species 'Cytophaga hutchinsonii' _entity_src_gen.gene_src_strain 'NCIMB 9469' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Cytophaga hutchinsonii ATCC 33406' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269798 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name speedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q11XA0_CYTH3 _struct_ref.pdbx_db_accession Q11XA0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MHTQEALFVRLALDAWNTQSSRTDKLIQSLSNEALAVETAPGRNSGTYLLGHLTAVHDAMLPLLELGDTLYPQLAPVFIQ NPDKSGLEKPEINDLRLYWSLVQERLANQFNQLQPADWFNKHAAISREDFLKEPHRNKLSVLINRTNHMAYHLGQLAYLK K ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QNL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 162 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q11XA0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 161 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 161 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2QNL _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q11XA0 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2QNL # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 49.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'NANODROP, 1.6M (NH4)2SO4, 10.0% Dioxane, 0.1M MES pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2007-07-02 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97895 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97895 _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 2QNL _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 28.061 _reflns.number_obs 29769 _reflns.pdbx_Rmerge_I_obs 0.029 _reflns.pdbx_netI_over_sigmaI 34.130 _reflns.percent_possible_obs 97.000 _reflns.B_iso_Wilson_estimate 14.54 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 11.33 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.50 1.55 9779 ? 4223 0.161 5.6 ? ? ? ? ? 80.50 1 1 1.55 1.62 20105 ? 6057 0.148 7.7 ? ? ? ? ? 95.50 2 1 1.62 1.69 24173 ? 5188 0.122 11.4 ? ? ? ? ? 98.60 3 1 1.69 1.78 38219 ? 5630 0.099 17.6 ? ? ? ? ? 99.90 4 1 1.78 1.89 41173 ? 5541 0.073 24.6 ? ? ? ? ? 100.00 5 1 1.89 2.04 42311 ? 5746 0.050 33.6 ? ? ? ? ? 99.90 6 1 2.04 2.24 39867 ? 5437 0.035 44.4 ? ? ? ? ? 99.70 7 1 2.24 2.56 39959 ? 5510 0.029 53.2 ? ? ? ? ? 99.30 8 1 2.56 3.23 40938 ? 5593 0.023 62.8 ? ? ? ? ? 98.50 9 1 3.23 28.061 40739 ? 5520 0.019 75.1 ? ? ? ? ? 97.60 10 1 # _refine.entry_id 2QNL _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 28.061 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.320 _refine.ls_number_reflns_obs 29702 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. TWO CHLORIDE IONS, ONE SULFATE ION AND FIVE GLYCEROL MOLECULES WERE MODELED. ; _refine.ls_R_factor_obs 0.161 _refine.ls_R_factor_R_work 0.159 _refine.ls_R_factor_R_free 0.185 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1519 _refine.B_iso_mean 11.670 _refine.aniso_B[1][1] -0.040 _refine.aniso_B[2][2] -0.040 _refine.aniso_B[3][3] 0.060 _refine.aniso_B[1][2] -0.020 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.pdbx_overall_ESU_R 0.068 _refine.pdbx_overall_ESU_R_Free 0.069 _refine.overall_SU_ML 0.038 _refine.overall_SU_B 1.967 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1281 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 250 _refine_hist.number_atoms_total 1568 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 28.061 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1431 0.018 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 955 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1955 1.644 1.968 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2337 1.134 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 181 4.305 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 68 42.042 24.559 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 233 10.144 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 8.356 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 213 0.086 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1619 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 282 0.012 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 368 0.235 0.300 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1049 0.194 0.300 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 730 0.188 0.500 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 665 0.094 0.500 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 308 0.208 0.500 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 26 0.309 0.300 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 67 0.268 0.300 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 47 0.240 0.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 933 1.974 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 341 0.472 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1406 2.550 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 614 4.886 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 548 6.186 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.54 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 89.000 _refine_ls_shell.number_reflns_R_work 1835 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.162 _refine_ls_shell.R_factor_R_free 0.174 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 98 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 1933 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QNL _struct.title 'CRYSTAL STRUCTURE OF A PUTATIVE DNA DAMAGE-INDUCIBLE PROTEIN (CHU_0679) FROM CYTOPHAGA HUTCHINSONII ATCC 33406 AT 1.50 A RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;PUTATIVE DNA DAMAGE-INDUCIBLE PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, SIGNALING PROTEIN ; _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.entry_id 2QNL # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? # _struct_biol.id 1 _struct_biol.details ;SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? LEU A 31 ? GLY A 0 LEU A 30 1 ? 31 HELX_P HELX_P2 2 SER A 32 ? VAL A 38 ? SER A 31 VAL A 37 1 ? 7 HELX_P HELX_P3 3 SER A 46 ? LEU A 65 ? SER A 45 LEU A 64 1 ? 20 HELX_P HELX_P4 4 GLN A 74 ? ILE A 80 ? GLN A 73 ILE A 79 1 ? 7 HELX_P HELX_P5 5 PRO A 83 ? GLY A 87 ? PRO A 82 GLY A 86 5 ? 5 HELX_P HELX_P6 6 GLU A 92 ? LEU A 114 ? GLU A 91 LEU A 113 1 ? 23 HELX_P HELX_P7 7 GLN A 115 ? ASN A 121 ? GLN A 114 ASN A 120 5 ? 7 HELX_P HELX_P8 8 SER A 127 ? GLU A 134 ? SER A 126 GLU A 133 1 ? 8 HELX_P HELX_P9 9 ASN A 138 ? ALA A 158 ? ASN A 137 ALA A 157 1 ? 21 HELX_P HELX_P10 10 TYR A 159 ? LYS A 161 ? TYR A 158 LYS A 160 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A HIS 3 N ? ? A MSE 1 A HIS 2 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale3 covale both ? A ALA 60 C ? ? ? 1_555 A MSE 61 N ? ? A ALA 59 A MSE 60 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A MSE 61 C ? ? ? 1_555 A LEU 62 N ? ? A MSE 60 A LEU 61 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale5 covale both ? A HIS 149 C ? ? ? 1_555 A MSE 150 N ? ? A HIS 148 A MSE 149 1_555 ? ? ? ? ? ? ? 1.310 ? ? covale6 covale both ? A MSE 150 C ? ? ? 1_555 A ALA 151 N ? ? A MSE 149 A ALA 150 1_555 ? ? ? ? ? ? ? 1.324 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 162 ? 5 'BINDING SITE FOR RESIDUE CL A 162' AC2 Software A CL 163 ? 4 'BINDING SITE FOR RESIDUE CL A 163' AC3 Software A SO4 164 ? 6 'BINDING SITE FOR RESIDUE SO4 A 164' AC4 Software A GOL 165 ? 5 'BINDING SITE FOR RESIDUE GOL A 165' AC5 Software A GOL 166 ? 7 'BINDING SITE FOR RESIDUE GOL A 166' AC6 Software A GOL 167 ? 4 'BINDING SITE FOR RESIDUE GOL A 167' AC7 Software A GOL 168 ? 6 'BINDING SITE FOR RESIDUE GOL A 168' AC8 Software A GOL 169 ? 8 'BINDING SITE FOR RESIDUE GOL A 169' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLN A 20 ? GLN A 19 . ? 1_555 ? 2 AC1 5 ARG A 23 ? ARG A 22 . ? 1_555 ? 3 AC1 5 LEU A 154 ? LEU A 153 . ? 1_555 ? 4 AC1 5 GOL I . ? GOL A 169 . ? 1_555 ? 5 AC1 5 HOH J . ? HOH A 386 . ? 1_555 ? 6 AC2 4 ALA A 35 ? ALA A 34 . ? 1_555 ? 7 AC2 4 LEU A 160 ? LEU A 159 . ? 1_555 ? 8 AC2 4 LYS A 162 ? LYS A 161 . ? 1_555 ? 9 AC2 4 HOH J . ? HOH A 224 . ? 1_555 ? 10 AC3 6 ARG A 23 ? ARG A 22 . ? 12_555 ? 11 AC3 6 ASN A 145 ? ASN A 144 . ? 1_555 ? 12 AC3 6 GOL I . ? GOL A 169 . ? 12_555 ? 13 AC3 6 HOH J . ? HOH A 231 . ? 1_555 ? 14 AC3 6 HOH J . ? HOH A 356 . ? 1_555 ? 15 AC3 6 HOH J . ? HOH A 383 . ? 7_555 ? 16 AC4 5 HIS A 123 ? HIS A 122 . ? 1_555 ? 17 AC4 5 VAL A 142 ? VAL A 141 . ? 1_555 ? 18 AC4 5 ARG A 146 ? ARG A 145 . ? 1_555 ? 19 AC4 5 GOL G . ? GOL A 167 . ? 1_555 ? 20 AC4 5 HOH J . ? HOH A 348 . ? 1_555 ? 21 AC5 7 GLY A 1 ? GLY A 0 . ? 8_565 ? 22 AC5 7 MSE A 2 ? MSE A 1 . ? 8_565 ? 23 AC5 7 HIS A 3 ? HIS A 2 . ? 8_565 ? 24 AC5 7 THR A 4 ? THR A 3 . ? 8_565 ? 25 AC5 7 GLN A 29 ? GLN A 28 . ? 1_555 ? 26 AC5 7 GLU A 105 ? GLU A 104 . ? 1_555 ? 27 AC5 7 HOH J . ? HOH A 351 . ? 8_565 ? 28 AC6 4 HIS A 123 ? HIS A 122 . ? 1_555 ? 29 AC6 4 ARG A 137 ? ARG A 136 . ? 1_555 ? 30 AC6 4 GOL E . ? GOL A 165 . ? 1_555 ? 31 AC6 4 HOH J . ? HOH A 347 . ? 1_555 ? 32 AC7 6 ARG A 44 ? ARG A 43 . ? 1_555 ? 33 AC7 6 ASN A 45 ? ASN A 44 . ? 1_555 ? 34 AC7 6 TYR A 159 ? TYR A 158 . ? 12_555 ? 35 AC7 6 HOH J . ? HOH A 197 . ? 1_555 ? 36 AC7 6 HOH J . ? HOH A 269 . ? 12_555 ? 37 AC7 6 HOH J . ? HOH A 412 . ? 1_555 ? 38 AC8 8 GLN A 20 ? GLN A 19 . ? 1_555 ? 39 AC8 8 ASN A 148 ? ASN A 147 . ? 12_555 ? 40 AC8 8 HIS A 149 ? HIS A 148 . ? 12_555 ? 41 AC8 8 TYR A 152 ? TYR A 151 . ? 12_555 ? 42 AC8 8 CL B . ? CL A 162 . ? 1_555 ? 43 AC8 8 SO4 D . ? SO4 A 164 . ? 12_555 ? 44 AC8 8 HOH J . ? HOH A 231 . ? 12_555 ? 45 AC8 8 HOH J . ? HOH A 241 . ? 12_555 ? # _atom_sites.entry_id 2QNL _atom_sites.fract_transf_matrix[1][1] 0.015432 _atom_sites.fract_transf_matrix[1][2] 0.008910 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017819 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006717 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 HIS 3 2 2 HIS HIS A . n A 1 4 THR 4 3 3 THR THR A . n A 1 5 GLN 5 4 4 GLN GLN A . n A 1 6 GLU 6 5 5 GLU GLU A . n A 1 7 ALA 7 6 6 ALA ALA A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 PHE 9 8 8 PHE PHE A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 ARG 11 10 10 ARG ARG A . n A 1 12 LEU 12 11 11 LEU LEU A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 ASP 15 14 14 ASP ASP A . n A 1 16 ALA 16 15 15 ALA ALA A . n A 1 17 TRP 17 16 16 TRP TRP A . n A 1 18 ASN 18 17 17 ASN ASN A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 GLN 20 19 19 GLN GLN A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 SER 22 21 21 SER SER A . n A 1 23 ARG 23 22 22 ARG ARG A . n A 1 24 THR 24 23 23 THR THR A . n A 1 25 ASP 25 24 24 ASP ASP A . n A 1 26 LYS 26 25 25 LYS LYS A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 ILE 28 27 27 ILE ILE A . n A 1 29 GLN 29 28 28 GLN GLN A . n A 1 30 SER 30 29 29 SER SER A . n A 1 31 LEU 31 30 30 LEU LEU A . n A 1 32 SER 32 31 31 SER SER A . n A 1 33 ASN 33 32 32 ASN ASN A . n A 1 34 GLU 34 33 33 GLU GLU A . n A 1 35 ALA 35 34 34 ALA ALA A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 ALA 37 36 36 ALA ALA A . n A 1 38 VAL 38 37 37 VAL VAL A . n A 1 39 GLU 39 38 38 GLU GLU A . n A 1 40 THR 40 39 39 THR THR A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 PRO 42 41 41 PRO PRO A . n A 1 43 GLY 43 42 42 GLY GLY A . n A 1 44 ARG 44 43 43 ARG ARG A . n A 1 45 ASN 45 44 44 ASN ASN A . n A 1 46 SER 46 45 45 SER SER A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 THR 48 47 47 THR THR A . n A 1 49 TYR 49 48 48 TYR TYR A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 LEU 51 50 50 LEU LEU A . n A 1 52 GLY 52 51 51 GLY GLY A . n A 1 53 HIS 53 52 52 HIS HIS A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 THR 55 54 54 THR THR A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 VAL 57 56 56 VAL VAL A . n A 1 58 HIS 58 57 57 HIS HIS A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 MSE 61 60 60 MSE MSE A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 PRO 63 62 62 PRO PRO A . n A 1 64 LEU 64 63 63 LEU LEU A . n A 1 65 LEU 65 64 64 LEU LEU A . n A 1 66 GLU 66 65 65 GLU GLU A . n A 1 67 LEU 67 66 66 LEU LEU A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 ASP 69 68 68 ASP ASP A . n A 1 70 THR 70 69 69 THR THR A . n A 1 71 LEU 71 70 70 LEU LEU A . n A 1 72 TYR 72 71 71 TYR TYR A . n A 1 73 PRO 73 72 72 PRO PRO A . n A 1 74 GLN 74 73 73 GLN GLN A . n A 1 75 LEU 75 74 74 LEU LEU A . n A 1 76 ALA 76 75 75 ALA ALA A . n A 1 77 PRO 77 76 76 PRO PRO A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 PHE 79 78 78 PHE PHE A . n A 1 80 ILE 80 79 79 ILE ILE A . n A 1 81 GLN 81 80 80 GLN GLN A . n A 1 82 ASN 82 81 81 ASN ASN A . n A 1 83 PRO 83 82 82 PRO PRO A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 LYS 85 84 84 LYS LYS A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 LEU 88 87 87 LEU LEU A . n A 1 89 GLU 89 88 88 GLU GLU A . n A 1 90 LYS 90 89 89 LYS LYS A . n A 1 91 PRO 91 90 90 PRO PRO A . n A 1 92 GLU 92 91 91 GLU GLU A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 ASN 94 93 93 ASN ASN A . n A 1 95 ASP 95 94 94 ASP ASP A . n A 1 96 LEU 96 95 95 LEU LEU A . n A 1 97 ARG 97 96 96 ARG ARG A . n A 1 98 LEU 98 97 97 LEU LEU A . n A 1 99 TYR 99 98 98 TYR TYR A . n A 1 100 TRP 100 99 99 TRP TRP A . n A 1 101 SER 101 100 100 SER SER A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 VAL 103 102 102 VAL VAL A . n A 1 104 GLN 104 103 103 GLN GLN A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 ARG 106 105 105 ARG ARG A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 ALA 108 107 107 ALA ALA A . n A 1 109 ASN 109 108 108 ASN ASN A . n A 1 110 GLN 110 109 109 GLN GLN A . n A 1 111 PHE 111 110 110 PHE PHE A . n A 1 112 ASN 112 111 111 ASN ASN A . n A 1 113 GLN 113 112 112 GLN GLN A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 GLN 115 114 114 GLN GLN A . n A 1 116 PRO 116 115 115 PRO PRO A . n A 1 117 ALA 117 116 116 ALA ALA A . n A 1 118 ASP 118 117 117 ASP ASP A . n A 1 119 TRP 119 118 118 TRP TRP A . n A 1 120 PHE 120 119 119 PHE PHE A . n A 1 121 ASN 121 120 120 ASN ASN A . n A 1 122 LYS 122 121 121 LYS LYS A . n A 1 123 HIS 123 122 122 HIS HIS A . n A 1 124 ALA 124 123 123 ALA ALA A . n A 1 125 ALA 125 124 124 ALA ALA A . n A 1 126 ILE 126 125 125 ILE ILE A . n A 1 127 SER 127 126 126 SER SER A . n A 1 128 ARG 128 127 127 ARG ARG A . n A 1 129 GLU 129 128 128 GLU GLU A . n A 1 130 ASP 130 129 129 ASP ASP A . n A 1 131 PHE 131 130 130 PHE PHE A . n A 1 132 LEU 132 131 131 LEU LEU A . n A 1 133 LYS 133 132 132 LYS LYS A . n A 1 134 GLU 134 133 133 GLU GLU A . n A 1 135 PRO 135 134 134 PRO PRO A . n A 1 136 HIS 136 135 135 HIS HIS A . n A 1 137 ARG 137 136 136 ARG ARG A . n A 1 138 ASN 138 137 137 ASN ASN A . n A 1 139 LYS 139 138 138 LYS LYS A . n A 1 140 LEU 140 139 139 LEU LEU A . n A 1 141 SER 141 140 140 SER SER A . n A 1 142 VAL 142 141 141 VAL VAL A . n A 1 143 LEU 143 142 142 LEU LEU A . n A 1 144 ILE 144 143 143 ILE ILE A . n A 1 145 ASN 145 144 144 ASN ASN A . n A 1 146 ARG 146 145 145 ARG ARG A . n A 1 147 THR 147 146 146 THR THR A . n A 1 148 ASN 148 147 147 ASN ASN A . n A 1 149 HIS 149 148 148 HIS HIS A . n A 1 150 MSE 150 149 149 MSE MSE A . n A 1 151 ALA 151 150 150 ALA ALA A . n A 1 152 TYR 152 151 151 TYR TYR A . n A 1 153 HIS 153 152 152 HIS HIS A . n A 1 154 LEU 154 153 153 LEU LEU A . n A 1 155 GLY 155 154 154 GLY GLY A . n A 1 156 GLN 156 155 155 GLN GLN A . n A 1 157 LEU 157 156 156 LEU LEU A . n A 1 158 ALA 158 157 157 ALA ALA A . n A 1 159 TYR 159 158 158 TYR TYR A . n A 1 160 LEU 160 159 159 LEU LEU A . n A 1 161 LYS 161 160 160 LYS LYS A . n A 1 162 LYS 162 161 161 LYS LYS A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 162 1 CL CL A . C 2 CL 1 163 2 CL CL A . D 3 SO4 1 164 8 SO4 SO4 A . E 4 GOL 1 165 3 GOL GOL A . F 4 GOL 1 166 4 GOL GOL A . G 4 GOL 1 167 5 GOL GOL A . H 4 GOL 1 168 6 GOL GOL A . I 4 GOL 1 169 7 GOL GOL A . J 5 HOH 1 170 9 HOH HOH A . J 5 HOH 2 171 10 HOH HOH A . J 5 HOH 3 172 11 HOH HOH A . J 5 HOH 4 173 12 HOH HOH A . J 5 HOH 5 174 13 HOH HOH A . J 5 HOH 6 175 14 HOH HOH A . J 5 HOH 7 176 15 HOH HOH A . J 5 HOH 8 177 16 HOH HOH A . J 5 HOH 9 178 17 HOH HOH A . J 5 HOH 10 179 18 HOH HOH A . J 5 HOH 11 180 19 HOH HOH A . J 5 HOH 12 181 20 HOH HOH A . J 5 HOH 13 182 21 HOH HOH A . J 5 HOH 14 183 22 HOH HOH A . J 5 HOH 15 184 23 HOH HOH A . J 5 HOH 16 185 24 HOH HOH A . J 5 HOH 17 186 25 HOH HOH A . J 5 HOH 18 187 26 HOH HOH A . J 5 HOH 19 188 27 HOH HOH A . J 5 HOH 20 189 28 HOH HOH A . J 5 HOH 21 190 29 HOH HOH A . J 5 HOH 22 191 30 HOH HOH A . J 5 HOH 23 192 31 HOH HOH A . J 5 HOH 24 193 32 HOH HOH A . J 5 HOH 25 194 33 HOH HOH A . J 5 HOH 26 195 34 HOH HOH A . J 5 HOH 27 196 35 HOH HOH A . J 5 HOH 28 197 36 HOH HOH A . J 5 HOH 29 198 37 HOH HOH A . J 5 HOH 30 199 38 HOH HOH A . J 5 HOH 31 200 39 HOH HOH A . J 5 HOH 32 201 40 HOH HOH A . J 5 HOH 33 202 41 HOH HOH A . J 5 HOH 34 203 42 HOH HOH A . J 5 HOH 35 204 43 HOH HOH A . J 5 HOH 36 205 44 HOH HOH A . J 5 HOH 37 206 45 HOH HOH A . J 5 HOH 38 207 46 HOH HOH A . J 5 HOH 39 208 47 HOH HOH A . J 5 HOH 40 209 48 HOH HOH A . J 5 HOH 41 210 49 HOH HOH A . J 5 HOH 42 211 50 HOH HOH A . J 5 HOH 43 212 51 HOH HOH A . J 5 HOH 44 213 52 HOH HOH A . J 5 HOH 45 214 53 HOH HOH A . J 5 HOH 46 215 54 HOH HOH A . J 5 HOH 47 216 55 HOH HOH A . J 5 HOH 48 217 56 HOH HOH A . J 5 HOH 49 218 57 HOH HOH A . J 5 HOH 50 219 58 HOH HOH A . J 5 HOH 51 220 59 HOH HOH A . J 5 HOH 52 221 60 HOH HOH A . J 5 HOH 53 222 61 HOH HOH A . J 5 HOH 54 223 62 HOH HOH A . J 5 HOH 55 224 63 HOH HOH A . J 5 HOH 56 225 64 HOH HOH A . J 5 HOH 57 226 65 HOH HOH A . J 5 HOH 58 227 66 HOH HOH A . J 5 HOH 59 228 67 HOH HOH A . J 5 HOH 60 229 68 HOH HOH A . J 5 HOH 61 230 69 HOH HOH A . J 5 HOH 62 231 70 HOH HOH A . J 5 HOH 63 232 71 HOH HOH A . J 5 HOH 64 233 72 HOH HOH A . J 5 HOH 65 234 73 HOH HOH A . J 5 HOH 66 235 74 HOH HOH A . J 5 HOH 67 236 75 HOH HOH A . J 5 HOH 68 237 76 HOH HOH A . J 5 HOH 69 238 77 HOH HOH A . J 5 HOH 70 239 78 HOH HOH A . J 5 HOH 71 240 79 HOH HOH A . J 5 HOH 72 241 80 HOH HOH A . J 5 HOH 73 242 81 HOH HOH A . J 5 HOH 74 243 82 HOH HOH A . J 5 HOH 75 244 83 HOH HOH A . J 5 HOH 76 245 84 HOH HOH A . J 5 HOH 77 246 85 HOH HOH A . J 5 HOH 78 247 86 HOH HOH A . J 5 HOH 79 248 87 HOH HOH A . J 5 HOH 80 249 88 HOH HOH A . J 5 HOH 81 250 89 HOH HOH A . J 5 HOH 82 251 90 HOH HOH A . J 5 HOH 83 252 91 HOH HOH A . J 5 HOH 84 253 92 HOH HOH A . J 5 HOH 85 254 93 HOH HOH A . J 5 HOH 86 255 94 HOH HOH A . J 5 HOH 87 256 95 HOH HOH A . J 5 HOH 88 257 96 HOH HOH A . J 5 HOH 89 258 97 HOH HOH A . J 5 HOH 90 259 98 HOH HOH A . J 5 HOH 91 260 99 HOH HOH A . J 5 HOH 92 261 100 HOH HOH A . J 5 HOH 93 262 101 HOH HOH A . J 5 HOH 94 263 102 HOH HOH A . J 5 HOH 95 264 103 HOH HOH A . J 5 HOH 96 265 104 HOH HOH A . J 5 HOH 97 266 105 HOH HOH A . J 5 HOH 98 267 106 HOH HOH A . J 5 HOH 99 268 107 HOH HOH A . J 5 HOH 100 269 108 HOH HOH A . J 5 HOH 101 270 109 HOH HOH A . J 5 HOH 102 271 110 HOH HOH A . J 5 HOH 103 272 111 HOH HOH A . J 5 HOH 104 273 112 HOH HOH A . J 5 HOH 105 274 113 HOH HOH A . J 5 HOH 106 275 114 HOH HOH A . J 5 HOH 107 276 115 HOH HOH A . J 5 HOH 108 277 116 HOH HOH A . J 5 HOH 109 278 117 HOH HOH A . J 5 HOH 110 279 118 HOH HOH A . J 5 HOH 111 280 119 HOH HOH A . J 5 HOH 112 281 120 HOH HOH A . J 5 HOH 113 282 121 HOH HOH A . J 5 HOH 114 283 122 HOH HOH A . J 5 HOH 115 284 123 HOH HOH A . J 5 HOH 116 285 124 HOH HOH A . J 5 HOH 117 286 125 HOH HOH A . J 5 HOH 118 287 126 HOH HOH A . J 5 HOH 119 288 127 HOH HOH A . J 5 HOH 120 289 128 HOH HOH A . J 5 HOH 121 290 129 HOH HOH A . J 5 HOH 122 291 130 HOH HOH A . J 5 HOH 123 292 131 HOH HOH A . J 5 HOH 124 293 132 HOH HOH A . J 5 HOH 125 294 133 HOH HOH A . J 5 HOH 126 295 134 HOH HOH A . J 5 HOH 127 296 135 HOH HOH A . J 5 HOH 128 297 136 HOH HOH A . J 5 HOH 129 298 137 HOH HOH A . J 5 HOH 130 299 138 HOH HOH A . J 5 HOH 131 300 139 HOH HOH A . J 5 HOH 132 301 140 HOH HOH A . J 5 HOH 133 302 141 HOH HOH A . J 5 HOH 134 303 142 HOH HOH A . J 5 HOH 135 304 143 HOH HOH A . J 5 HOH 136 305 144 HOH HOH A . J 5 HOH 137 306 145 HOH HOH A . J 5 HOH 138 307 146 HOH HOH A . J 5 HOH 139 308 147 HOH HOH A . J 5 HOH 140 309 148 HOH HOH A . J 5 HOH 141 310 149 HOH HOH A . J 5 HOH 142 311 150 HOH HOH A . J 5 HOH 143 312 151 HOH HOH A . J 5 HOH 144 313 152 HOH HOH A . J 5 HOH 145 314 153 HOH HOH A . J 5 HOH 146 315 154 HOH HOH A . J 5 HOH 147 316 155 HOH HOH A . J 5 HOH 148 317 156 HOH HOH A . J 5 HOH 149 318 157 HOH HOH A . J 5 HOH 150 319 158 HOH HOH A . J 5 HOH 151 320 159 HOH HOH A . J 5 HOH 152 321 160 HOH HOH A . J 5 HOH 153 322 161 HOH HOH A . J 5 HOH 154 323 162 HOH HOH A . J 5 HOH 155 324 163 HOH HOH A . J 5 HOH 156 325 164 HOH HOH A . J 5 HOH 157 326 165 HOH HOH A . J 5 HOH 158 327 166 HOH HOH A . J 5 HOH 159 328 167 HOH HOH A . J 5 HOH 160 329 168 HOH HOH A . J 5 HOH 161 330 169 HOH HOH A . J 5 HOH 162 331 170 HOH HOH A . J 5 HOH 163 332 171 HOH HOH A . J 5 HOH 164 333 172 HOH HOH A . J 5 HOH 165 334 173 HOH HOH A . J 5 HOH 166 335 174 HOH HOH A . J 5 HOH 167 336 175 HOH HOH A . J 5 HOH 168 337 176 HOH HOH A . J 5 HOH 169 338 177 HOH HOH A . J 5 HOH 170 339 178 HOH HOH A . J 5 HOH 171 340 179 HOH HOH A . J 5 HOH 172 341 180 HOH HOH A . J 5 HOH 173 342 181 HOH HOH A . J 5 HOH 174 343 182 HOH HOH A . J 5 HOH 175 344 183 HOH HOH A . J 5 HOH 176 345 184 HOH HOH A . J 5 HOH 177 346 185 HOH HOH A . J 5 HOH 178 347 186 HOH HOH A . J 5 HOH 179 348 187 HOH HOH A . J 5 HOH 180 349 188 HOH HOH A . J 5 HOH 181 350 189 HOH HOH A . J 5 HOH 182 351 190 HOH HOH A . J 5 HOH 183 352 191 HOH HOH A . J 5 HOH 184 353 192 HOH HOH A . J 5 HOH 185 354 193 HOH HOH A . J 5 HOH 186 355 194 HOH HOH A . J 5 HOH 187 356 195 HOH HOH A . J 5 HOH 188 357 196 HOH HOH A . J 5 HOH 189 358 197 HOH HOH A . J 5 HOH 190 359 198 HOH HOH A . J 5 HOH 191 360 199 HOH HOH A . J 5 HOH 192 361 200 HOH HOH A . J 5 HOH 193 362 201 HOH HOH A . J 5 HOH 194 363 202 HOH HOH A . J 5 HOH 195 364 203 HOH HOH A . J 5 HOH 196 365 204 HOH HOH A . J 5 HOH 197 366 205 HOH HOH A . J 5 HOH 198 367 206 HOH HOH A . J 5 HOH 199 368 207 HOH HOH A . J 5 HOH 200 369 208 HOH HOH A . J 5 HOH 201 370 209 HOH HOH A . J 5 HOH 202 371 210 HOH HOH A . J 5 HOH 203 372 211 HOH HOH A . J 5 HOH 204 373 212 HOH HOH A . J 5 HOH 205 374 213 HOH HOH A . J 5 HOH 206 375 214 HOH HOH A . J 5 HOH 207 376 215 HOH HOH A . J 5 HOH 208 377 216 HOH HOH A . J 5 HOH 209 378 217 HOH HOH A . J 5 HOH 210 379 218 HOH HOH A . J 5 HOH 211 380 219 HOH HOH A . J 5 HOH 212 381 220 HOH HOH A . J 5 HOH 213 382 221 HOH HOH A . J 5 HOH 214 383 222 HOH HOH A . J 5 HOH 215 384 223 HOH HOH A . J 5 HOH 216 385 224 HOH HOH A . J 5 HOH 217 386 225 HOH HOH A . J 5 HOH 218 387 226 HOH HOH A . J 5 HOH 219 388 227 HOH HOH A . J 5 HOH 220 389 228 HOH HOH A . J 5 HOH 221 390 229 HOH HOH A . J 5 HOH 222 391 230 HOH HOH A . J 5 HOH 223 392 231 HOH HOH A . J 5 HOH 224 393 232 HOH HOH A . J 5 HOH 225 394 233 HOH HOH A . J 5 HOH 226 395 234 HOH HOH A . J 5 HOH 227 396 235 HOH HOH A . J 5 HOH 228 397 236 HOH HOH A . J 5 HOH 229 398 237 HOH HOH A . J 5 HOH 230 399 238 HOH HOH A . J 5 HOH 231 400 239 HOH HOH A . J 5 HOH 232 401 240 HOH HOH A . J 5 HOH 233 402 241 HOH HOH A . J 5 HOH 234 403 242 HOH HOH A . J 5 HOH 235 404 243 HOH HOH A . J 5 HOH 236 405 244 HOH HOH A . J 5 HOH 237 406 245 HOH HOH A . J 5 HOH 238 407 246 HOH HOH A . J 5 HOH 239 408 247 HOH HOH A . J 5 HOH 240 409 248 HOH HOH A . J 5 HOH 241 410 249 HOH HOH A . J 5 HOH 242 411 250 HOH HOH A . J 5 HOH 243 412 251 HOH HOH A . J 5 HOH 244 413 252 HOH HOH A . J 5 HOH 245 414 253 HOH HOH A . J 5 HOH 246 415 254 HOH HOH A . J 5 HOH 247 416 255 HOH HOH A . J 5 HOH 248 417 256 HOH HOH A . J 5 HOH 249 418 257 HOH HOH A . J 5 HOH 250 419 258 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 61 A MSE 60 ? MET SELENOMETHIONINE 3 A MSE 150 A MSE 149 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 6530 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 24.8116666667 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-31 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 19.3910 _pdbx_refine_tls.origin_y 24.2790 _pdbx_refine_tls.origin_z 10.5720 _pdbx_refine_tls.T[1][1] -0.0367 _pdbx_refine_tls.T[2][2] -0.0100 _pdbx_refine_tls.T[3][3] -0.0189 _pdbx_refine_tls.T[1][2] 0.0029 _pdbx_refine_tls.T[1][3] -0.0034 _pdbx_refine_tls.T[2][3] 0.0087 _pdbx_refine_tls.L[1][1] 0.9891 _pdbx_refine_tls.L[2][2] 0.3292 _pdbx_refine_tls.L[3][3] 0.4614 _pdbx_refine_tls.L[1][2] 0.1913 _pdbx_refine_tls.L[1][3] 0.0071 _pdbx_refine_tls.L[2][3] -0.0228 _pdbx_refine_tls.S[1][1] 0.0380 _pdbx_refine_tls.S[2][2] -0.0291 _pdbx_refine_tls.S[3][3] -0.0089 _pdbx_refine_tls.S[1][2] -0.0879 _pdbx_refine_tls.S[1][3] -0.0032 _pdbx_refine_tls.S[2][3] 0.0165 _pdbx_refine_tls.S[2][1] -0.0067 _pdbx_refine_tls.S[3][1] -0.0182 _pdbx_refine_tls.S[3][2] 0.0055 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 162 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 161 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? package 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.00 'March. 27, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MAR345 CCD ? ? ? ? 'data collection' ? ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 300 ; BIOMOLECULE: 1 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON BURIED SURFACE AREA. SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORT THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE. ; 999 ; SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A PHE 8 ? B CD2 A PHE 8 ? B 1.255 1.383 -0.128 0.015 N 2 1 CE1 A PHE 8 ? B CZ A PHE 8 ? B 1.138 1.369 -0.231 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A PHE 8 ? B CG A PHE 8 ? B CD2 A PHE 8 ? B 126.85 120.80 6.05 0.70 N 2 1 CD1 A PHE 8 ? B CG A PHE 8 ? B CD2 A PHE 8 ? B 109.57 118.30 -8.73 1.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 79 ? ? -120.34 -51.92 2 1 LYS A 84 ? ? -92.96 30.09 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 33 ? CD ? A GLU 34 CD 2 1 Y 1 A GLU 33 ? OE1 ? A GLU 34 OE1 3 1 Y 1 A GLU 33 ? OE2 ? A GLU 34 OE2 4 1 Y 1 A GLN 73 ? OE1 ? A GLN 74 OE1 5 1 Y 1 A GLN 73 ? NE2 ? A GLN 74 NE2 6 1 Y 1 A LYS 84 ? CD ? A LYS 85 CD 7 1 Y 1 A LYS 84 ? CE ? A LYS 85 CE 8 1 Y 1 A LYS 84 ? NZ ? A LYS 85 NZ 9 1 Y 1 A ARG 127 ? CD ? A ARG 128 CD 10 1 Y 1 A ARG 127 ? NE ? A ARG 128 NE 11 1 Y 1 A ARG 127 ? CZ ? A ARG 128 CZ 12 1 Y 1 A ARG 127 ? NH1 ? A ARG 128 NH1 13 1 Y 1 A ARG 127 ? NH2 ? A ARG 128 NH2 14 1 Y 1 A GLU 128 ? CG ? A GLU 129 CG 15 1 Y 1 A GLU 128 ? CD ? A GLU 129 CD 16 1 Y 1 A GLU 128 ? OE1 ? A GLU 129 OE1 17 1 Y 1 A GLU 128 ? OE2 ? A GLU 129 OE2 18 1 Y 1 A LYS 132 ? NZ ? A LYS 133 NZ 19 1 Y 1 A LYS 160 ? CE ? A LYS 161 CE 20 1 Y 1 A LYS 160 ? NZ ? A LYS 161 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 'SULFATE ION' SO4 4 GLYCEROL GOL 5 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #