HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 19-JUL-07 2QNT TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION FROM AGROBACTERIUM TITLE 2 TUMEFACIENS STR. C58 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN ATU1872; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AGR_C_3434P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 ATCC: 33970; SOURCE 6 GENE: AGR_C_3434, ATU1872; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS GLYOXALASE/BLEOMYCIN RESISTANCE PROTEIN/DIOXYGENASE FAMILY RELATED KEYWDS 2 PROTEIN, PSI-2, MCSG, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, UNCHARACTERIZED KEYWDS 4 PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,E.EVDOKIMOVA,M.KUDRITSKA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 13-JUL-11 2QNT 1 VERSN REVDAT 3 24-FEB-09 2QNT 1 VERSN REVDAT 2 21-AUG-07 2QNT 1 REMARK REVDAT 1 31-JUL-07 2QNT 0 JRNL AUTH B.NOCEK,E.EVDOKIMOVA,M.KUDRITSKA,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION FROM JRNL TITL 2 AGROBACTERIUM TUMEFACIENS STR. C58. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1375 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1886 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1051 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.752 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1189 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 859 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1619 ; 1.639 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2053 ; 1.042 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 147 ; 6.994 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;32.246 ;22.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 197 ;13.249 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;21.853 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 159 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1366 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 300 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 197 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 881 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 574 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 669 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 101 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.138 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 65 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 827 ; 1.182 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 272 ; 0.262 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1097 ; 1.382 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 580 ; 1.937 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 515 ; 2.426 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A -1 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0324 14.5038 65.5694 REMARK 3 T TENSOR REMARK 3 T11: 0.0743 T22: 0.1290 REMARK 3 T33: 0.0433 T12: -0.0989 REMARK 3 T13: -0.0151 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 47.2791 L22: 13.6575 REMARK 3 L33: 5.9486 L12: 15.8433 REMARK 3 L13: -2.4212 L23: 6.1619 REMARK 3 S TENSOR REMARK 3 S11: -0.5145 S12: -0.0484 S13: -0.4057 REMARK 3 S21: -0.2338 S22: 0.0668 S23: 0.3727 REMARK 3 S31: -0.0400 S32: 0.1102 S33: 0.4477 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 4 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6190 7.4452 60.8011 REMARK 3 T TENSOR REMARK 3 T11: 0.0605 T22: 0.0912 REMARK 3 T33: 0.0864 T12: -0.0464 REMARK 3 T13: -0.0062 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 3.6759 L22: 8.4938 REMARK 3 L33: 1.6718 L12: -1.8293 REMARK 3 L13: -0.6150 L23: 0.7933 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: -0.0031 S13: 0.4586 REMARK 3 S21: -0.2122 S22: 0.0932 S23: -0.3006 REMARK 3 S31: -0.2543 S32: 0.3058 S33: -0.0982 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2537 -8.0311 54.7130 REMARK 3 T TENSOR REMARK 3 T11: 0.0762 T22: 0.0787 REMARK 3 T33: 0.0607 T12: 0.0106 REMARK 3 T13: 0.0135 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.6211 L22: 7.5071 REMARK 3 L33: 3.4368 L12: -0.7689 REMARK 3 L13: -0.1138 L23: 2.3148 REMARK 3 S TENSOR REMARK 3 S11: -0.0895 S12: -0.0992 S13: -0.0470 REMARK 3 S21: -0.0794 S22: 0.0905 S23: -0.1648 REMARK 3 S31: 0.1804 S32: 0.0796 S33: -0.0009 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7417 -15.3920 49.4414 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.0093 REMARK 3 T33: 0.0648 T12: 0.0780 REMARK 3 T13: 0.0547 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 15.2182 L22: 9.5198 REMARK 3 L33: 2.9038 L12: -2.9170 REMARK 3 L13: -2.3357 L23: 0.9093 REMARK 3 S TENSOR REMARK 3 S11: 0.1111 S12: 0.1016 S13: -0.3819 REMARK 3 S21: 0.0495 S22: -0.1218 S23: -0.2778 REMARK 3 S31: 0.5789 S32: 0.2717 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2521 -10.0833 45.1799 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.1075 REMARK 3 T33: 0.1573 T12: 0.0359 REMARK 3 T13: 0.0411 T23: 0.1182 REMARK 3 L TENSOR REMARK 3 L11: 15.7707 L22: 9.7285 REMARK 3 L33: 4.4256 L12: -9.9628 REMARK 3 L13: 5.4715 L23: -0.5864 REMARK 3 S TENSOR REMARK 3 S11: -0.1300 S12: 0.5440 S13: 0.8032 REMARK 3 S21: 0.0211 S22: -0.2907 S23: -0.7056 REMARK 3 S31: 0.3186 S32: 0.6948 S33: 0.4207 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2527 -5.5029 44.6536 REMARK 3 T TENSOR REMARK 3 T11: -0.0852 T22: 0.1132 REMARK 3 T33: 0.1170 T12: 0.0112 REMARK 3 T13: 0.0592 T23: 0.0820 REMARK 3 L TENSOR REMARK 3 L11: 4.6597 L22: 0.8406 REMARK 3 L33: 18.7787 L12: 1.6060 REMARK 3 L13: 4.5118 L23: 3.1515 REMARK 3 S TENSOR REMARK 3 S11: -0.2775 S12: 0.0885 S13: -0.5405 REMARK 3 S21: -0.5303 S22: 0.0265 S23: -0.3758 REMARK 3 S31: -0.1647 S32: 0.7750 S33: 0.2510 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 39 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4310 -6.9366 55.8701 REMARK 3 T TENSOR REMARK 3 T11: -0.0036 T22: 0.1288 REMARK 3 T33: 0.0818 T12: 0.0451 REMARK 3 T13: -0.0105 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 4.3267 L22: 5.0847 REMARK 3 L33: 7.1765 L12: 0.1623 REMARK 3 L13: 0.8295 L23: -1.5034 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: -0.1457 S13: 0.0969 REMARK 3 S21: 0.1290 S22: -0.1350 S23: -0.1935 REMARK 3 S31: 0.2605 S32: 0.6781 S33: 0.1173 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 40 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9451 -9.0534 55.5418 REMARK 3 T TENSOR REMARK 3 T11: 0.0553 T22: 0.0572 REMARK 3 T33: 0.0780 T12: 0.0259 REMARK 3 T13: 0.0057 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 1.6245 L22: 5.1812 REMARK 3 L33: 6.4656 L12: 2.1231 REMARK 3 L13: -1.6807 L23: -3.9264 REMARK 3 S TENSOR REMARK 3 S11: -0.1701 S12: -0.0411 S13: 0.0268 REMARK 3 S21: -0.0388 S22: -0.0317 S23: -0.1357 REMARK 3 S31: 0.3878 S32: 0.2230 S33: 0.2018 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0382 -12.2998 65.7926 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.0657 REMARK 3 T33: 0.0359 T12: -0.0112 REMARK 3 T13: 0.0333 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 12.0103 L22: 4.8330 REMARK 3 L33: 2.2831 L12: -1.3021 REMARK 3 L13: -3.1177 L23: 0.1938 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.4102 S13: -0.1616 REMARK 3 S21: 0.3215 S22: -0.0831 S23: 0.0264 REMARK 3 S31: 0.3916 S32: -0.0156 S33: 0.0603 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1335 -19.0875 58.8615 REMARK 3 T TENSOR REMARK 3 T11: 0.3713 T22: 0.3796 REMARK 3 T33: 0.2914 T12: -0.0779 REMARK 3 T13: 0.1490 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 2.0186 L22: 5.7533 REMARK 3 L33: 128.5710 L12: 3.2645 REMARK 3 L13: 12.6507 L23: 15.6273 REMARK 3 S TENSOR REMARK 3 S11: -0.3637 S12: -0.6676 S13: -0.5571 REMARK 3 S21: 0.1326 S22: 0.7917 S23: -0.6288 REMARK 3 S31: 3.1147 S32: -1.9363 S33: -0.4280 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8704 -9.2111 49.7240 REMARK 3 T TENSOR REMARK 3 T11: 0.0838 T22: 0.0890 REMARK 3 T33: 0.0671 T12: -0.0249 REMARK 3 T13: 0.0359 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.3387 L22: 5.3307 REMARK 3 L33: 2.7586 L12: 0.2857 REMARK 3 L13: 1.0025 L23: -2.2278 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: 0.1478 S13: -0.1446 REMARK 3 S21: 0.0020 S22: -0.2314 S23: 0.1685 REMARK 3 S31: 0.2385 S32: -0.1366 S33: 0.2593 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9939 -0.0609 36.3166 REMARK 3 T TENSOR REMARK 3 T11: 0.0746 T22: 0.0971 REMARK 3 T33: 0.0637 T12: -0.0115 REMARK 3 T13: 0.0069 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 2.3864 L22: 1.3384 REMARK 3 L33: 5.8766 L12: 0.7434 REMARK 3 L13: -1.5954 L23: 1.1983 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: 0.1054 S13: -0.1340 REMARK 3 S21: -0.1404 S22: 0.1437 S23: -0.1286 REMARK 3 S31: -0.2189 S32: 0.4211 S33: -0.0993 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 86 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6664 -8.5951 34.1353 REMARK 3 T TENSOR REMARK 3 T11: 0.1130 T22: 0.0623 REMARK 3 T33: 0.0311 T12: 0.0061 REMARK 3 T13: 0.0074 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 6.2608 L22: 5.2413 REMARK 3 L33: 2.5464 L12: -1.3756 REMARK 3 L13: -0.7695 L23: 1.9273 REMARK 3 S TENSOR REMARK 3 S11: -0.0919 S12: 0.1766 S13: -0.3511 REMARK 3 S21: 0.0351 S22: 0.1393 S23: -0.1328 REMARK 3 S31: 0.2813 S32: 0.0355 S33: -0.0474 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6453 6.1423 31.7023 REMARK 3 T TENSOR REMARK 3 T11: 0.1879 T22: 0.1195 REMARK 3 T33: 0.0023 T12: 0.0727 REMARK 3 T13: -0.0003 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 5.7631 L22: 7.3531 REMARK 3 L33: 6.0413 L12: -3.2935 REMARK 3 L13: -0.8888 L23: 1.4315 REMARK 3 S TENSOR REMARK 3 S11: 0.3169 S12: 0.6523 S13: 0.2533 REMARK 3 S21: -0.7851 S22: -0.3875 S23: -0.0076 REMARK 3 S31: -0.5778 S32: -0.4555 S33: 0.0706 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0174 -3.1801 40.3589 REMARK 3 T TENSOR REMARK 3 T11: 0.0890 T22: 0.0595 REMARK 3 T33: 0.0428 T12: -0.0058 REMARK 3 T13: 0.0071 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.1914 L22: 3.3073 REMARK 3 L33: 2.6746 L12: 0.1102 REMARK 3 L13: -0.4683 L23: -1.1646 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.1033 S13: -0.0340 REMARK 3 S21: -0.0764 S22: -0.0651 S23: -0.0356 REMARK 3 S31: -0.0564 S32: 0.0294 S33: 0.0834 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QNT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB043831. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27485 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LI2SO4, 0.1 M HEPES, 25% PEG REMARK 280 3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.53800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.16450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.16450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.26900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.16450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.16450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.80700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.16450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.16450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.26900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.16450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.16450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.80700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.53800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE SOFTWARE GENERATED ASSEMBLY REMARK 300 INFORMATION FOR THE STRUCTURE IN THIS ENTRY. REMARK 300 THE REMARK MAY ALSO PROVIDE INFORMATION ON BURIED REMARK 300 SURFACE AREA. REMARK 300 AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS REMARK 300 PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 105.07600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 60 REMARK 465 ALA A 61 REMARK 465 SER A 123 REMARK 465 GLN A 124 REMARK 465 SER A 125 REMARK 465 GLY A 126 REMARK 465 GLU A 127 REMARK 465 ASN A 128 REMARK 465 LEU A 129 REMARK 465 TYR A 130 REMARK 465 PHE A 131 REMARK 465 GLN A 132 REMARK 465 GLY A 133 REMARK 465 GLY A 134 REMARK 465 SER A 135 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASN A -5 O HOH A 272 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 4 -60.94 -105.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 136 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5895 RELATED DB: TARGETDB DBREF 2QNT A 1 127 UNP Q8UE88 Q8UE88_AGRT5 1 127 SEQADV 2QNT ASN A -5 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT LEU A -4 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT TYR A -3 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT PHE A -2 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT GLN A -1 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT GLY A 0 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT ASN A 128 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT LEU A 129 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT TYR A 130 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT PHE A 131 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT GLN A 132 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT GLY A 133 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT GLY A 134 UNP Q8UE88 CLONING ARTIFACT SEQADV 2QNT SER A 135 UNP Q8UE88 CLONING ARTIFACT SEQRES 1 A 141 ASN LEU TYR PHE GLN GLY MSE ARG PHE VAL ASN PRO ILE SEQRES 2 A 141 PRO PHE VAL ARG ASP ILE ASN ARG SER LYS SER PHE TYR SEQRES 3 A 141 ARG ASP ARG LEU GLY LEU LYS ILE LEU GLU ASP PHE GLY SEQRES 4 A 141 SER PHE VAL LEU PHE GLU THR GLY PHE ALA ILE HIS GLU SEQRES 5 A 141 GLY ARG SER LEU GLU GLU THR ILE TRP ARG THR SER SER SEQRES 6 A 141 ASP ALA GLN GLU ALA TYR GLY ARG ARG ASN MSE LEU LEU SEQRES 7 A 141 TYR PHE GLU HIS ALA ASP VAL ASP ALA ALA PHE GLN ASP SEQRES 8 A 141 ILE ALA PRO HIS VAL GLU LEU ILE HIS PRO LEU GLU ARG SEQRES 9 A 141 GLN ALA TRP GLY GLN ARG VAL PHE ARG PHE TYR ASP PRO SEQRES 10 A 141 ASP GLY HIS ALA ILE GLU VAL GLY GLU SER LEU SER GLN SEQRES 11 A 141 SER GLY GLU ASN LEU TYR PHE GLN GLY GLY SER MODRES 2QNT MSE A 1 MET SELENOMETHIONINE MODRES 2QNT MSE A 70 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 70 13 HET EPE A 136 15 HETNAM MSE SELENOMETHIONINE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 EPE C8 H18 N2 O4 S FORMUL 3 HOH *154(H2 O) HELIX 1 1 ASP A 12 ARG A 23 1 12 HELIX 2 2 GLY A 47 ARG A 56 1 10 HELIX 3 3 ASP A 78 ALA A 87 1 10 HELIX 4 4 PRO A 88 VAL A 90 5 3 SHEET 1 A 4 PHE A 9 VAL A 10 0 SHEET 2 A 4 ALA A 43 GLU A 46 1 O HIS A 45 N VAL A 10 SHEET 3 A 4 PHE A 35 PHE A 38 -1 N VAL A 36 O ILE A 44 SHEET 4 A 4 ILE A 28 ASP A 31 -1 N GLU A 30 O LEU A 37 SHEET 1 B 4 LEU A 71 HIS A 76 0 SHEET 2 B 4 ALA A 115 GLU A 120 1 O GLU A 117 N PHE A 74 SHEET 3 B 4 ARG A 104 TYR A 109 -1 N PHE A 108 O ILE A 116 SHEET 4 B 4 LEU A 92 ARG A 98 -1 N ILE A 93 O ARG A 107 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C ASN A 69 N MSE A 70 1555 1555 1.32 LINK C MSE A 70 N LEU A 71 1555 1555 1.32 SITE 1 AC1 12 TYR A -3 ILE A 7 TRP A 101 ARG A 107 SITE 2 AC1 12 GLU A 117 LEU A 122 HOH A 145 HOH A 182 SITE 3 AC1 12 HOH A 224 HOH A 235 HOH A 265 HOH A 267 CRYST1 50.329 50.329 105.076 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019869 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009517 0.00000