HEADER TRANSFERASE 24-JUL-07 2QPO TITLE THERMOTOGA MARITIMA THYMIDINE KINASE IN THE APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 2.7.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TDK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-14B KEYWDS APO-FORM, ATP-BINDING, CYTOPLASM, DNA SYNTHESIS, KINASE, NUCLEOTIDE- KEYWDS 2 BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.SEGURA-PENA,J.LICHTER,M.TRANI,M.KONRAD,A.LAVIE,S.LUTZ REVDAT 3 21-FEB-24 2QPO 1 REMARK REVDAT 2 30-DEC-08 2QPO 1 JRNL VERSN REVDAT 1 16-OCT-07 2QPO 0 JRNL AUTH D.SEGURA-PENA,J.LICHTER,M.TRANI,M.KONRAD,A.LAVIE,S.LUTZ JRNL TITL QUATERNARY STRUCTURE CHANGE AS A MECHANISM FOR THE JRNL TITL 2 REGULATION OF THYMIDINE KINASE 1-LIKE ENZYMES. JRNL REF STRUCTURE V. 15 1555 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 18073106 JRNL DOI 10.1016/J.STR.2007.09.025 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 39001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4333 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2248 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 250 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4731 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.046 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4823 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6499 ; 1.594 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 590 ; 6.004 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;33.644 ;24.112 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 888 ;16.212 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.295 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 761 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3468 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2091 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3299 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 209 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.228 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3077 ; 0.928 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4813 ; 1.492 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1967 ; 2.461 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1686 ; 3.950 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43333 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 28.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22500 REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350 + 0.2 M NASO4, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.75000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8630 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 40 REMARK 465 ILE A 41 REMARK 465 ASP A 42 REMARK 465 SER A 43 REMARK 465 ARG A 44 REMARK 465 TYR A 45 REMARK 465 HIS A 46 REMARK 465 SER A 47 REMARK 465 THR A 48 REMARK 465 MET A 49 REMARK 465 ILE A 50 REMARK 465 VAL A 51 REMARK 465 SER A 52 REMARK 465 HIS A 53 REMARK 465 SER A 54 REMARK 465 GLY A 55 REMARK 465 ASN A 56 REMARK 465 GLY A 57 REMARK 465 VAL A 58 REMARK 465 GLU A 59 REMARK 465 GLU A 160 REMARK 465 ILE A 161 REMARK 465 ASP A 162 REMARK 465 VAL A 163 REMARK 465 GLY A 164 REMARK 465 GLY A 165 REMARK 465 GLN A 166 REMARK 465 LYS A 182 REMARK 465 ARG A 183 REMARK 465 VAL A 184 REMARK 465 MET B 1 REMARK 465 LYS B 40 REMARK 465 ILE B 41 REMARK 465 ASP B 42 REMARK 465 SER B 43 REMARK 465 ARG B 44 REMARK 465 TYR B 45 REMARK 465 HIS B 46 REMARK 465 SER B 47 REMARK 465 THR B 48 REMARK 465 MET B 49 REMARK 465 ILE B 50 REMARK 465 VAL B 51 REMARK 465 SER B 52 REMARK 465 HIS B 53 REMARK 465 SER B 54 REMARK 465 GLY B 55 REMARK 465 ASN B 56 REMARK 465 GLY B 57 REMARK 465 ALA B 155 REMARK 465 GLY B 156 REMARK 465 GLY B 157 REMARK 465 GLU B 158 REMARK 465 GLU B 159 REMARK 465 GLU B 160 REMARK 465 ILE B 161 REMARK 465 ASP B 162 REMARK 465 VAL B 163 REMARK 465 GLY B 164 REMARK 465 GLY B 165 REMARK 465 GLN B 166 REMARK 465 LYS B 182 REMARK 465 ARG B 183 REMARK 465 VAL B 184 REMARK 465 MET C 1 REMARK 465 LYS C 40 REMARK 465 ILE C 41 REMARK 465 ASP C 42 REMARK 465 SER C 43 REMARK 465 ARG C 44 REMARK 465 TYR C 45 REMARK 465 HIS C 46 REMARK 465 SER C 47 REMARK 465 THR C 48 REMARK 465 MET C 49 REMARK 465 ILE C 50 REMARK 465 VAL C 51 REMARK 465 SER C 52 REMARK 465 HIS C 53 REMARK 465 SER C 54 REMARK 465 GLY C 55 REMARK 465 ASN C 56 REMARK 465 GLY C 57 REMARK 465 VAL C 58 REMARK 465 ALA C 155 REMARK 465 GLY C 156 REMARK 465 GLY C 157 REMARK 465 GLU C 158 REMARK 465 GLU C 159 REMARK 465 GLU C 160 REMARK 465 ILE C 161 REMARK 465 ASP C 162 REMARK 465 VAL C 163 REMARK 465 GLY C 164 REMARK 465 GLY C 165 REMARK 465 GLN C 166 REMARK 465 GLU C 167 REMARK 465 LYS C 182 REMARK 465 ARG C 183 REMARK 465 VAL C 184 REMARK 465 MET D 1 REMARK 465 ASP D 42 REMARK 465 SER D 43 REMARK 465 ARG D 44 REMARK 465 TYR D 45 REMARK 465 HIS D 46 REMARK 465 SER D 47 REMARK 465 THR D 48 REMARK 465 MET D 49 REMARK 465 ILE D 50 REMARK 465 VAL D 51 REMARK 465 SER D 52 REMARK 465 HIS D 53 REMARK 465 SER D 54 REMARK 465 GLY D 55 REMARK 465 ASN D 56 REMARK 465 VAL D 154 REMARK 465 ALA D 155 REMARK 465 GLY D 156 REMARK 465 GLY D 157 REMARK 465 GLU D 158 REMARK 465 GLU D 159 REMARK 465 GLU D 160 REMARK 465 ILE D 161 REMARK 465 ASP D 162 REMARK 465 VAL D 163 REMARK 465 GLY D 164 REMARK 465 GLY D 165 REMARK 465 GLN D 166 REMARK 465 GLU D 167 REMARK 465 LYS D 182 REMARK 465 ARG D 183 REMARK 465 VAL D 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 181 CB CG CD CE NZ REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 VAL B 154 CG1 CG2 REMARK 470 GLU B 167 CB CG CD OE1 OE2 REMARK 470 LYS B 168 CB CG CD CE NZ REMARK 470 LYS B 181 CB CG CD CE NZ REMARK 470 LYS C 168 CB CG CD CE NZ REMARK 470 LYS C 181 CB CG CD CE NZ REMARK 470 LYS D 28 CG CD CE NZ REMARK 470 GLU D 64 CG CD OE1 OE2 REMARK 470 LYS D 71 CG CD CE NZ REMARK 470 LYS D 181 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS D 143 CB CYS D 143 SG -0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 20 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 90 -4.11 -54.01 REMARK 500 ASN A 147 8.42 -163.81 REMARK 500 ASN B 147 15.45 -155.77 REMARK 500 ASN C 147 14.72 -153.29 REMARK 500 ASN D 147 13.87 -154.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 140 SG REMARK 620 2 CYS A 143 SG 109.4 REMARK 620 3 CYS A 173 SG 118.3 118.2 REMARK 620 4 CYS A 176 SG 102.1 110.6 95.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 140 SG REMARK 620 2 CYS B 143 SG 104.6 REMARK 620 3 CYS B 173 SG 122.3 118.3 REMARK 620 4 CYS B 176 SG 100.3 116.4 93.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 140 SG REMARK 620 2 CYS C 143 SG 106.4 REMARK 620 3 CYS C 173 SG 119.1 118.5 REMARK 620 4 CYS C 176 SG 103.6 113.0 94.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 140 SG REMARK 620 2 CYS D 143 SG 109.7 REMARK 620 3 CYS D 173 SG 116.5 117.3 REMARK 620 4 CYS D 176 SG 102.2 113.0 96.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 304 DBREF 2QPO A 1 184 UNP Q9WYN2 KITH_THEMA 1 184 DBREF 2QPO B 1 184 UNP Q9WYN2 KITH_THEMA 1 184 DBREF 2QPO C 1 184 UNP Q9WYN2 KITH_THEMA 1 184 DBREF 2QPO D 1 184 UNP Q9WYN2 KITH_THEMA 1 184 SEQRES 1 A 184 MET SER GLY LYS LEU THR VAL ILE THR GLY PRO MET TYR SEQRES 2 A 184 SER GLY LYS THR THR GLU LEU LEU SER PHE VAL GLU ILE SEQRES 3 A 184 TYR LYS LEU GLY LYS LYS LYS VAL ALA VAL PHE LYS PRO SEQRES 4 A 184 LYS ILE ASP SER ARG TYR HIS SER THR MET ILE VAL SER SEQRES 5 A 184 HIS SER GLY ASN GLY VAL GLU ALA HIS VAL ILE GLU ARG SEQRES 6 A 184 PRO GLU GLU MET ARG LYS TYR ILE GLU GLU ASP THR ARG SEQRES 7 A 184 GLY VAL PHE ILE ASP GLU VAL GLN PHE PHE ASN PRO SER SEQRES 8 A 184 LEU PHE GLU VAL VAL LYS ASP LEU LEU ASP ARG GLY ILE SEQRES 9 A 184 ASP VAL PHE CYS ALA GLY LEU ASP LEU THR HIS LYS GLN SEQRES 10 A 184 ASN PRO PHE GLU THR THR ALA LEU LEU LEU SER LEU ALA SEQRES 11 A 184 ASP THR VAL ILE LYS LYS LYS ALA VAL CYS HIS ARG CYS SEQRES 12 A 184 GLY GLU TYR ASN ALA THR LEU THR LEU LYS VAL ALA GLY SEQRES 13 A 184 GLY GLU GLU GLU ILE ASP VAL GLY GLY GLN GLU LYS TYR SEQRES 14 A 184 ILE ALA VAL CYS ARG ASP CYS TYR ASN THR LEU LYS LYS SEQRES 15 A 184 ARG VAL SEQRES 1 B 184 MET SER GLY LYS LEU THR VAL ILE THR GLY PRO MET TYR SEQRES 2 B 184 SER GLY LYS THR THR GLU LEU LEU SER PHE VAL GLU ILE SEQRES 3 B 184 TYR LYS LEU GLY LYS LYS LYS VAL ALA VAL PHE LYS PRO SEQRES 4 B 184 LYS ILE ASP SER ARG TYR HIS SER THR MET ILE VAL SER SEQRES 5 B 184 HIS SER GLY ASN GLY VAL GLU ALA HIS VAL ILE GLU ARG SEQRES 6 B 184 PRO GLU GLU MET ARG LYS TYR ILE GLU GLU ASP THR ARG SEQRES 7 B 184 GLY VAL PHE ILE ASP GLU VAL GLN PHE PHE ASN PRO SER SEQRES 8 B 184 LEU PHE GLU VAL VAL LYS ASP LEU LEU ASP ARG GLY ILE SEQRES 9 B 184 ASP VAL PHE CYS ALA GLY LEU ASP LEU THR HIS LYS GLN SEQRES 10 B 184 ASN PRO PHE GLU THR THR ALA LEU LEU LEU SER LEU ALA SEQRES 11 B 184 ASP THR VAL ILE LYS LYS LYS ALA VAL CYS HIS ARG CYS SEQRES 12 B 184 GLY GLU TYR ASN ALA THR LEU THR LEU LYS VAL ALA GLY SEQRES 13 B 184 GLY GLU GLU GLU ILE ASP VAL GLY GLY GLN GLU LYS TYR SEQRES 14 B 184 ILE ALA VAL CYS ARG ASP CYS TYR ASN THR LEU LYS LYS SEQRES 15 B 184 ARG VAL SEQRES 1 C 184 MET SER GLY LYS LEU THR VAL ILE THR GLY PRO MET TYR SEQRES 2 C 184 SER GLY LYS THR THR GLU LEU LEU SER PHE VAL GLU ILE SEQRES 3 C 184 TYR LYS LEU GLY LYS LYS LYS VAL ALA VAL PHE LYS PRO SEQRES 4 C 184 LYS ILE ASP SER ARG TYR HIS SER THR MET ILE VAL SER SEQRES 5 C 184 HIS SER GLY ASN GLY VAL GLU ALA HIS VAL ILE GLU ARG SEQRES 6 C 184 PRO GLU GLU MET ARG LYS TYR ILE GLU GLU ASP THR ARG SEQRES 7 C 184 GLY VAL PHE ILE ASP GLU VAL GLN PHE PHE ASN PRO SER SEQRES 8 C 184 LEU PHE GLU VAL VAL LYS ASP LEU LEU ASP ARG GLY ILE SEQRES 9 C 184 ASP VAL PHE CYS ALA GLY LEU ASP LEU THR HIS LYS GLN SEQRES 10 C 184 ASN PRO PHE GLU THR THR ALA LEU LEU LEU SER LEU ALA SEQRES 11 C 184 ASP THR VAL ILE LYS LYS LYS ALA VAL CYS HIS ARG CYS SEQRES 12 C 184 GLY GLU TYR ASN ALA THR LEU THR LEU LYS VAL ALA GLY SEQRES 13 C 184 GLY GLU GLU GLU ILE ASP VAL GLY GLY GLN GLU LYS TYR SEQRES 14 C 184 ILE ALA VAL CYS ARG ASP CYS TYR ASN THR LEU LYS LYS SEQRES 15 C 184 ARG VAL SEQRES 1 D 184 MET SER GLY LYS LEU THR VAL ILE THR GLY PRO MET TYR SEQRES 2 D 184 SER GLY LYS THR THR GLU LEU LEU SER PHE VAL GLU ILE SEQRES 3 D 184 TYR LYS LEU GLY LYS LYS LYS VAL ALA VAL PHE LYS PRO SEQRES 4 D 184 LYS ILE ASP SER ARG TYR HIS SER THR MET ILE VAL SER SEQRES 5 D 184 HIS SER GLY ASN GLY VAL GLU ALA HIS VAL ILE GLU ARG SEQRES 6 D 184 PRO GLU GLU MET ARG LYS TYR ILE GLU GLU ASP THR ARG SEQRES 7 D 184 GLY VAL PHE ILE ASP GLU VAL GLN PHE PHE ASN PRO SER SEQRES 8 D 184 LEU PHE GLU VAL VAL LYS ASP LEU LEU ASP ARG GLY ILE SEQRES 9 D 184 ASP VAL PHE CYS ALA GLY LEU ASP LEU THR HIS LYS GLN SEQRES 10 D 184 ASN PRO PHE GLU THR THR ALA LEU LEU LEU SER LEU ALA SEQRES 11 D 184 ASP THR VAL ILE LYS LYS LYS ALA VAL CYS HIS ARG CYS SEQRES 12 D 184 GLY GLU TYR ASN ALA THR LEU THR LEU LYS VAL ALA GLY SEQRES 13 D 184 GLY GLU GLU GLU ILE ASP VAL GLY GLY GLN GLU LYS TYR SEQRES 14 D 184 ILE ALA VAL CYS ARG ASP CYS TYR ASN THR LEU LYS LYS SEQRES 15 D 184 ARG VAL HET ZN A 201 1 HET SO4 A 301 5 HET ZN B 202 1 HET SO4 B 302 5 HET ZN C 204 1 HET SO4 C 303 5 HET ZN D 203 1 HET SO4 D 304 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 5 ZN 4(ZN 2+) FORMUL 6 SO4 4(O4 S 2-) FORMUL 13 HOH *155(H2 O) HELIX 1 1 GLY A 15 GLY A 30 1 16 HELIX 2 2 ARG A 65 ILE A 73 5 9 HELIX 3 3 GLU A 84 PHE A 88 5 5 HELIX 4 4 ASN A 89 PRO A 90 5 2 HELIX 5 5 SER A 91 ARG A 102 1 12 HELIX 6 6 PHE A 120 ALA A 130 1 11 HELIX 7 7 CYS A 173 LYS A 181 1 9 HELIX 8 8 GLY B 15 GLY B 30 1 16 HELIX 9 9 ARG B 65 ILE B 73 5 9 HELIX 10 10 GLU B 84 PHE B 88 5 5 HELIX 11 11 ASN B 89 PRO B 90 5 2 HELIX 12 12 SER B 91 ARG B 102 1 12 HELIX 13 13 PHE B 120 ALA B 130 1 11 HELIX 14 14 CYS B 173 LYS B 181 1 9 HELIX 15 15 GLY C 15 GLY C 30 1 16 HELIX 16 16 ARG C 65 ILE C 73 5 9 HELIX 17 17 GLU C 84 PHE C 88 5 5 HELIX 18 18 ASN C 89 PRO C 90 5 2 HELIX 19 19 SER C 91 ARG C 102 1 12 HELIX 20 20 PHE C 120 ALA C 130 1 11 HELIX 21 21 CYS C 173 LYS C 181 1 9 HELIX 22 22 GLY D 15 GLY D 30 1 16 HELIX 23 23 ARG D 65 ILE D 73 5 9 HELIX 24 24 GLU D 84 PHE D 88 5 5 HELIX 25 25 ASN D 89 PRO D 90 5 2 HELIX 26 26 SER D 91 ARG D 102 1 12 HELIX 27 27 PHE D 120 ALA D 130 1 11 HELIX 28 28 CYS D 173 LYS D 181 1 9 SHEET 1 A 6 HIS A 61 VAL A 62 0 SHEET 2 A 6 LYS A 33 LYS A 38 1 N VAL A 36 O HIS A 61 SHEET 3 A 6 THR A 77 ILE A 82 1 O PHE A 81 N ALA A 35 SHEET 4 A 6 ASP A 105 LEU A 111 1 O PHE A 107 N ILE A 82 SHEET 5 A 6 LEU A 5 GLY A 10 1 N ILE A 8 O CYS A 108 SHEET 6 A 6 THR A 132 LYS A 135 1 O ILE A 134 N VAL A 7 SHEET 1 B 2 ALA A 138 VAL A 139 0 SHEET 2 B 2 TYR A 146 ALA A 148 -1 O ALA A 148 N ALA A 138 SHEET 1 C 2 LEU A 150 VAL A 154 0 SHEET 2 C 2 LYS A 168 VAL A 172 -1 O LYS A 168 N VAL A 154 SHEET 1 D 6 GLU B 59 VAL B 62 0 SHEET 2 D 6 LYS B 33 LYS B 38 1 N VAL B 36 O GLU B 59 SHEET 3 D 6 THR B 77 ILE B 82 1 O PHE B 81 N ALA B 35 SHEET 4 D 6 ASP B 105 GLY B 110 1 O ASP B 105 N VAL B 80 SHEET 5 D 6 LEU B 5 THR B 9 1 N ILE B 8 O CYS B 108 SHEET 6 D 6 THR B 132 LYS B 135 1 O ILE B 134 N THR B 9 SHEET 1 E 2 ALA B 138 VAL B 139 0 SHEET 2 E 2 TYR B 146 ALA B 148 -1 O ALA B 148 N ALA B 138 SHEET 1 F 2 LEU B 150 LYS B 153 0 SHEET 2 F 2 TYR B 169 VAL B 172 -1 O ILE B 170 N LEU B 152 SHEET 1 G 6 HIS C 61 VAL C 62 0 SHEET 2 G 6 VAL C 34 LYS C 38 1 N VAL C 36 O HIS C 61 SHEET 3 G 6 GLY C 79 ILE C 82 1 O PHE C 81 N PHE C 37 SHEET 4 G 6 ASP C 105 LEU C 111 1 O PHE C 107 N ILE C 82 SHEET 5 G 6 LEU C 5 GLY C 10 1 N ILE C 8 O CYS C 108 SHEET 6 G 6 THR C 132 LYS C 135 1 O ILE C 134 N THR C 9 SHEET 1 H 2 ALA C 138 VAL C 139 0 SHEET 2 H 2 TYR C 146 ALA C 148 -1 O ALA C 148 N ALA C 138 SHEET 1 I 2 LEU C 150 LEU C 152 0 SHEET 2 I 2 ILE C 170 VAL C 172 -1 O ILE C 170 N LEU C 152 SHEET 1 J 6 HIS D 61 ILE D 63 0 SHEET 2 J 6 VAL D 34 PRO D 39 1 N LYS D 38 O ILE D 63 SHEET 3 J 6 GLY D 79 ILE D 82 1 O PHE D 81 N PHE D 37 SHEET 4 J 6 ASP D 105 LEU D 111 1 O ALA D 109 N ILE D 82 SHEET 5 J 6 LEU D 5 GLY D 10 1 N ILE D 8 O CYS D 108 SHEET 6 J 6 THR D 132 LYS D 135 1 O ILE D 134 N THR D 9 SHEET 1 K 2 LEU D 150 LEU D 152 0 SHEET 2 K 2 ILE D 170 VAL D 172 -1 O ILE D 170 N LEU D 152 LINK SG CYS A 140 ZN ZN A 201 1555 1555 2.20 LINK SG CYS A 143 ZN ZN A 201 1555 1555 2.37 LINK SG CYS A 173 ZN ZN A 201 1555 1555 2.39 LINK SG CYS A 176 ZN ZN A 201 1555 1555 2.35 LINK SG CYS B 140 ZN ZN B 202 1555 1555 2.24 LINK SG CYS B 143 ZN ZN B 202 1555 1555 2.31 LINK SG CYS B 173 ZN ZN B 202 1555 1555 2.43 LINK SG CYS B 176 ZN ZN B 202 1555 1555 2.54 LINK SG CYS C 140 ZN ZN C 204 1555 1555 2.33 LINK SG CYS C 143 ZN ZN C 204 1555 1555 2.32 LINK SG CYS C 173 ZN ZN C 204 1555 1555 2.34 LINK SG CYS C 176 ZN ZN C 204 1555 1555 2.49 LINK SG CYS D 140 ZN ZN D 203 1555 1555 2.29 LINK SG CYS D 143 ZN ZN D 203 1555 1555 2.46 LINK SG CYS D 173 ZN ZN D 203 1555 1555 2.30 LINK SG CYS D 176 ZN ZN D 203 1555 1555 2.44 SITE 1 AC1 4 CYS A 140 CYS A 143 CYS A 173 CYS A 176 SITE 1 AC2 5 TYR A 13 SER A 14 GLY A 15 LYS A 16 SITE 2 AC2 5 THR A 17 SITE 1 AC3 4 CYS B 140 CYS B 143 CYS B 173 CYS B 176 SITE 1 AC4 7 TYR B 13 SER B 14 GLY B 15 LYS B 16 SITE 2 AC4 7 THR B 17 HOH B 314 HOH B 315 SITE 1 AC5 4 CYS C 140 CYS C 143 CYS C 173 CYS C 176 SITE 1 AC6 5 TYR C 13 SER C 14 GLY C 15 LYS C 16 SITE 2 AC6 5 THR C 17 SITE 1 AC7 4 CYS D 140 CYS D 143 CYS D 173 CYS D 176 SITE 1 AC8 6 TYR D 13 SER D 14 GLY D 15 LYS D 16 SITE 2 AC8 6 THR D 17 HOH D 307 CRYST1 52.600 113.500 54.800 90.00 109.16 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019011 0.000000 0.006606 0.00000 SCALE2 0.000000 0.008811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019318 0.00000