HEADER ENDOCYTOSIS 25-JUL-07 2QPT TITLE CRYSTAL STRUCTURE OF AN EHD ATPASE INVOLVED IN MEMBRANE REMODELLING COMPND MOL_ID: 1; COMPND 2 MOLECULE: EH DOMAIN-CONTAINING PROTEIN-2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EHD2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSKB-LNB KEYWDS PROTEIN-NUCLEOTIDE COMPLEX, MEMBRANE PROTEIN, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR O.DAUMKE REVDAT 6 21-FEB-24 2QPT 1 REMARK REVDAT 5 20-OCT-21 2QPT 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2QPT 1 VERSN REVDAT 3 24-FEB-09 2QPT 1 VERSN REVDAT 2 30-OCT-07 2QPT 1 JRNL REVDAT 1 16-OCT-07 2QPT 0 JRNL AUTH O.DAUMKE,R.LUNDMARK,Y.VALLIS,S.MARTENS,P.J.BUTLER, JRNL AUTH 2 H.T.MCMAHON JRNL TITL ARCHITECTURAL AND MECHANISTIC INSIGHTS INTO AN EHD ATPASE JRNL TITL 2 INVOLVED IN MEMBRANE REMODELLING. JRNL REF NATURE V. 449 923 2007 JRNL REFN ISSN 0028-0836 JRNL PMID 17914359 JRNL DOI 10.1038/NATURE06173 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0022 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 12091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 623 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3795 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 65.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.09000 REMARK 3 B22 (A**2) : -3.01000 REMARK 3 B33 (A**2) : -2.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.96000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.491 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.431 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 50.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4065 ; 0.019 ; 0.023 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5280 ; 1.119 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 5.347 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;38.127 ;23.663 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 703 ;21.240 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.157 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2898 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1880 ; 0.276 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2653 ; 0.339 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.215 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.115 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 60 ; 0.323 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.177 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2575 ; 0.336 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3825 ; 0.546 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1648 ; 0.254 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1455 ; 0.428 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 59 REMARK 3 RESIDUE RANGE : A 284 A 423 REMARK 3 ORIGIN FOR THE GROUP (A): 32.9170 -31.2250 -15.9484 REMARK 3 T TENSOR REMARK 3 T11: -0.1177 T22: 0.1985 REMARK 3 T33: -0.2472 T12: -0.1701 REMARK 3 T13: -0.1143 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.5140 L22: 11.2519 REMARK 3 L33: 1.8985 L12: 2.5066 REMARK 3 L13: -0.2237 L23: 1.5379 REMARK 3 S TENSOR REMARK 3 S11: -0.1126 S12: 0.2916 S13: -0.1190 REMARK 3 S21: -0.8333 S22: 0.1841 S23: 0.0753 REMARK 3 S31: -0.3876 S32: 0.0667 S33: -0.0715 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 283 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0584 -52.5227 -10.5681 REMARK 3 T TENSOR REMARK 3 T11: -0.0644 T22: -0.2516 REMARK 3 T33: -0.2559 T12: 0.0177 REMARK 3 T13: 0.0460 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 6.1920 L22: 3.4553 REMARK 3 L33: 2.7796 L12: 2.1911 REMARK 3 L13: 1.6705 L23: -0.2384 REMARK 3 S TENSOR REMARK 3 S11: 0.1711 S12: -0.6228 S13: 0.1898 REMARK 3 S21: 0.8090 S22: -0.1251 S23: -0.0965 REMARK 3 S31: -0.4861 S32: 0.0286 S33: -0.0460 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 443 A 538 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0377 -85.0376 -43.4848 REMARK 3 T TENSOR REMARK 3 T11: -0.2528 T22: -0.2689 REMARK 3 T33: -0.2883 T12: -0.0317 REMARK 3 T13: 0.0013 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 8.0448 L22: 9.0816 REMARK 3 L33: 8.7832 L12: 1.5693 REMARK 3 L13: 0.5694 L23: -0.5129 REMARK 3 S TENSOR REMARK 3 S11: 0.4776 S12: 0.2781 S13: -0.4283 REMARK 3 S21: -0.3231 S22: -0.1686 S23: -0.3504 REMARK 3 S31: 0.1493 S32: 0.0102 S33: -0.3090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000043903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97962 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR AND REMARK 200 A TOROIDAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12251 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07080 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.03600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3% PEG2000 MME, 50MM MES, 4MM MGCL2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K, PH 6.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.92550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.32650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.92550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 67.32650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND MOLECULE OF THE EHD2 DIMER IS GENERATED BY THE REMARK 300 TWO FOLD CRYSTALLOGRAPHIC AXIS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7640 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 15.50146 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -53.88251 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 PRO A -5 REMARK 465 HIS A -4 REMARK 465 MET A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 SER A 3 REMARK 465 TRP A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 GLN A 13 REMARK 465 ARG A 14 REMARK 465 PRO A 15 REMARK 465 GLU A 16 REMARK 465 ALA A 17 REMARK 465 ILE A 18 REMARK 465 ASN A 112 REMARK 465 ALA A 113 REMARK 465 LEU A 114 REMARK 465 VAL A 115 REMARK 465 VAL A 116 REMARK 465 ASP A 117 REMARK 465 PRO A 118 REMARK 465 GLU A 119 REMARK 465 LYS A 120 REMARK 465 PRO A 121 REMARK 465 PHE A 122 REMARK 465 ARG A 123 REMARK 465 LYS A 124 REMARK 465 LEU A 125 REMARK 465 ASN A 126 REMARK 465 PRO A 127 REMARK 465 PHE A 128 REMARK 465 GLY A 129 REMARK 465 GLY A 160 REMARK 465 ALA A 161 REMARK 465 LYS A 162 REMARK 465 GLN A 163 REMARK 465 ARG A 164 REMARK 465 VAL A 165 REMARK 465 SER A 166 REMARK 465 GLU A 424 REMARK 465 ARG A 425 REMARK 465 GLY A 426 REMARK 465 PRO A 427 REMARK 465 ASP A 428 REMARK 465 GLU A 429 REMARK 465 ALA A 430 REMARK 465 ILE A 431 REMARK 465 GLU A 432 REMARK 465 ASP A 433 REMARK 465 GLY A 434 REMARK 465 GLU A 435 REMARK 465 GLU A 436 REMARK 465 GLY A 437 REMARK 465 SER A 438 REMARK 465 GLU A 439 REMARK 465 ASP A 440 REMARK 465 ASP A 441 REMARK 465 ALA A 442 REMARK 465 LYS A 539 REMARK 465 GLY A 540 REMARK 465 SER A 541 REMARK 465 ALA A 542 REMARK 465 GLU A 543 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 158 CG CD1 CD2 REMARK 480 GLU A 455 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 66 O GLU A 195 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 443 OE1 GLU A 443 2553 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 395 C PRO A 395 O 0.176 REMARK 500 GLU A 455 CG GLU A 455 CD 0.389 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 158 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU A 158 CB - CG - CD1 ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU A 396 C - N - CA ANGL. DEV. = -15.4 DEGREES REMARK 500 GLU A 455 CB - CG - CD ANGL. DEV. = -27.3 DEGREES REMARK 500 GLU A 455 CG - CD - OE1 ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 45 -39.56 -135.52 REMARK 500 HIS A 46 -65.85 -134.09 REMARK 500 PRO A 90 -85.30 -65.68 REMARK 500 PRO A 92 130.15 -32.76 REMARK 500 CYS A 96 -176.43 -175.13 REMARK 500 HIS A 102 177.36 -59.31 REMARK 500 THR A 131 152.99 -48.61 REMARK 500 ASN A 143 123.87 -176.87 REMARK 500 LYS A 220 41.18 39.28 REMARK 500 LEU A 263 -72.77 -65.59 REMARK 500 ASP A 266 30.24 -75.41 REMARK 500 ASN A 267 18.89 -146.19 REMARK 500 THR A 320 -72.75 -49.61 REMARK 500 GLU A 325 -74.76 -42.28 REMARK 500 LYS A 334 43.45 -100.03 REMARK 500 HIS A 347 84.92 64.82 REMARK 500 PRO A 354 -177.49 -68.72 REMARK 500 ALA A 387 -85.16 -38.96 REMARK 500 LEU A 402 77.42 -111.42 REMARK 500 GLU A 403 -71.00 -132.27 REMARK 500 PHE A 422 -63.46 -99.96 REMARK 500 ALA A 461 73.39 52.28 REMARK 500 ALA A 463 -80.39 -60.48 REMARK 500 SER A 468 152.34 -47.98 REMARK 500 THR A 479 8.86 -66.54 REMARK 500 ARG A 536 128.88 -176.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 700 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 72 OG1 REMARK 620 2 ANP A 600 O2B 64.8 REMARK 620 3 ANP A 600 O1G 136.7 76.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 494 OD1 REMARK 620 2 ASP A 496 OD1 81.1 REMARK 620 3 ASP A 498 OD1 78.3 87.1 REMARK 620 4 MET A 500 O 81.6 162.6 88.8 REMARK 620 5 GLU A 505 OE1 117.3 90.0 163.5 98.5 REMARK 620 6 GLU A 505 OE2 72.8 60.3 138.9 114.5 50.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 600 DBREF 2QPT A 1 543 UNP Q8BH64 Q8BH64_MOUSE 1 543 SEQADV 2QPT GLY A -6 UNP Q8BH64 EXPRESSION TAG SEQADV 2QPT PRO A -5 UNP Q8BH64 EXPRESSION TAG SEQADV 2QPT HIS A -4 UNP Q8BH64 EXPRESSION TAG SEQADV 2QPT MET A -3 UNP Q8BH64 EXPRESSION TAG SEQADV 2QPT GLY A -2 UNP Q8BH64 EXPRESSION TAG SEQADV 2QPT GLY A -1 UNP Q8BH64 EXPRESSION TAG SEQADV 2QPT SER A 0 UNP Q8BH64 EXPRESSION TAG SEQADV 2QPT ALA A 410 UNP Q8BH64 GLN 410 ENGINEERED MUTATION SEQRES 1 A 550 GLY PRO HIS MET GLY GLY SER MET PHE SER TRP LEU LYS SEQRES 2 A 550 LYS GLY GLY ALA ARG GLY GLN ARG PRO GLU ALA ILE ARG SEQRES 3 A 550 THR VAL THR SER SER LEU LYS GLU LEU TYR ARG THR LYS SEQRES 4 A 550 LEU LEU PRO LEU GLU GLU HIS TYR ARG PHE GLY SER PHE SEQRES 5 A 550 HIS SER PRO ALA LEU GLU ASP ALA ASP PHE ASP GLY LYS SEQRES 6 A 550 PRO MET VAL LEU VAL ALA GLY GLN TYR SER THR GLY LYS SEQRES 7 A 550 THR SER PHE ILE GLN TYR LEU LEU GLU GLN GLU VAL PRO SEQRES 8 A 550 GLY SER ARG VAL GLY PRO GLU PRO THR THR ASP CYS PHE SEQRES 9 A 550 VAL ALA VAL MET HIS GLY GLU THR GLU GLY THR VAL PRO SEQRES 10 A 550 GLY ASN ALA LEU VAL VAL ASP PRO GLU LYS PRO PHE ARG SEQRES 11 A 550 LYS LEU ASN PRO PHE GLY ASN THR PHE LEU ASN ARG PHE SEQRES 12 A 550 MET CYS ALA GLN LEU PRO ASN GLN VAL LEU GLU SER ILE SEQRES 13 A 550 SER ILE ILE ASP THR PRO GLY ILE LEU SER GLY ALA LYS SEQRES 14 A 550 GLN ARG VAL SER ARG GLY TYR ASP PHE PRO ALA VAL LEU SEQRES 15 A 550 ARG TRP PHE ALA GLU ARG VAL ASP LEU ILE ILE LEU LEU SEQRES 16 A 550 PHE ASP ALA HIS LYS LEU GLU ILE SER ASP GLU PHE SER SEQRES 17 A 550 GLU ALA ILE GLY ALA LEU ARG GLY HIS GLU ASP LYS ILE SEQRES 18 A 550 ARG VAL VAL LEU ASN LYS ALA ASP MET VAL GLU THR GLN SEQRES 19 A 550 GLN LEU MET ARG VAL TYR GLY ALA LEU MET TRP ALA LEU SEQRES 20 A 550 GLY LYS VAL VAL GLY THR PRO GLU VAL LEU ARG VAL TYR SEQRES 21 A 550 ILE GLY SER PHE TRP SER GLN PRO LEU LEU VAL PRO ASP SEQRES 22 A 550 ASN ARG ARG LEU PHE GLU LEU GLU GLU GLN ASP LEU PHE SEQRES 23 A 550 ARG ASP ILE GLN GLY LEU PRO ARG HIS ALA ALA LEU ARG SEQRES 24 A 550 LYS LEU ASN ASP LEU VAL LYS ARG ALA ARG LEU VAL ARG SEQRES 25 A 550 VAL HIS ALA TYR ILE ILE SER TYR LEU LYS LYS GLU MET SEQRES 26 A 550 PRO THR VAL PHE GLY LYS GLU ASN LYS LYS LYS GLN LEU SEQRES 27 A 550 ILE LEU LYS LEU PRO VAL ILE PHE ALA LYS ILE GLN LEU SEQRES 28 A 550 GLU HIS HIS ILE SER PRO GLY ASP PHE PRO ASP CYS GLN SEQRES 29 A 550 LYS MET GLN GLU LEU LEU MET ALA HIS ASP PHE THR LYS SEQRES 30 A 550 PHE HIS SER LEU LYS PRO LYS LEU LEU GLU ALA LEU ASP SEQRES 31 A 550 ASP MET LEU ALA GLN ASP ILE ALA LYS LEU MET PRO LEU SEQRES 32 A 550 LEU ARG GLN GLU GLU LEU GLU SER VAL GLU ALA GLY VAL SEQRES 33 A 550 ALA GLY GLY ALA PHE GLU GLY THR ARG MET GLY PRO PHE SEQRES 34 A 550 VAL GLU ARG GLY PRO ASP GLU ALA ILE GLU ASP GLY GLU SEQRES 35 A 550 GLU GLY SER GLU ASP ASP ALA GLU TRP VAL VAL THR LYS SEQRES 36 A 550 ASP LYS SER LYS TYR ASP GLU ILE PHE TYR ASN LEU ALA SEQRES 37 A 550 PRO ALA ASP GLY LYS LEU SER GLY SER LYS ALA LYS THR SEQRES 38 A 550 TRP MET VAL GLY THR LYS LEU PRO ASN SER VAL LEU GLY SEQRES 39 A 550 ARG ILE TRP LYS LEU SER ASP VAL ASP ARG ASP GLY MET SEQRES 40 A 550 LEU ASP ASP GLU GLU PHE ALA LEU ALA SER HIS LEU ILE SEQRES 41 A 550 GLU ALA LYS LEU GLU GLY HIS GLY LEU PRO THR ASN LEU SEQRES 42 A 550 PRO ARG ARG LEU VAL PRO PRO SER LYS ARG ARG GLN LYS SEQRES 43 A 550 GLY SER ALA GLU HET MG A 700 1 HET CA A 701 1 HET ANP A 600 31 HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 2 MG MG 2+ FORMUL 3 CA CA 2+ FORMUL 4 ANP C10 H17 N6 O12 P3 FORMUL 5 HOH *6(H2 O) HELIX 1 1 THR A 20 LEU A 33 1 14 HELIX 2 2 LEU A 33 TYR A 40 1 8 HELIX 3 3 ARG A 41 PHE A 45 5 5 HELIX 4 4 GLY A 70 GLU A 80 1 11 HELIX 5 5 ASN A 143 ILE A 149 1 7 HELIX 6 6 ASP A 170 VAL A 182 1 13 HELIX 7 7 SER A 197 LEU A 207 1 11 HELIX 8 8 HIS A 210 ASP A 212 5 3 HELIX 9 9 LYS A 220 VAL A 224 5 5 HELIX 10 10 GLU A 225 GLY A 245 1 21 HELIX 11 11 ASN A 267 GLY A 284 1 18 HELIX 12 12 LEU A 285 ARG A 287 5 3 HELIX 13 13 HIS A 288 MET A 318 1 31 HELIX 14 14 GLY A 323 LYS A 334 1 12 HELIX 15 15 LYS A 334 GLU A 345 1 12 HELIX 16 16 ASP A 355 HIS A 366 1 12 HELIX 17 17 ASP A 367 PHE A 371 5 5 HELIX 18 18 LYS A 375 LEU A 402 1 28 HELIX 19 19 SER A 404 GLY A 408 5 5 HELIX 20 20 GLU A 415 GLY A 420 5 6 HELIX 21 21 ASP A 449 LEU A 460 1 12 HELIX 22 22 SER A 468 THR A 479 1 12 HELIX 23 23 PRO A 482 ASP A 494 1 13 HELIX 24 24 ASP A 503 GLY A 519 1 17 HELIX 25 25 PRO A 527 VAL A 531 5 5 SHEET 1 A 8 GLY A 107 VAL A 109 0 SHEET 2 A 8 PHE A 136 GLN A 140 -1 O GLN A 140 N GLY A 107 SHEET 3 A 8 PHE A 97 MET A 101 1 N PHE A 97 O MET A 137 SHEET 4 A 8 SER A 150 ASP A 153 -1 O ASP A 153 N VAL A 98 SHEET 5 A 8 MET A 60 GLY A 65 1 N VAL A 61 O ILE A 152 SHEET 6 A 8 LEU A 184 ASP A 190 1 O ILE A 186 N LEU A 62 SHEET 7 A 8 ILE A 214 ASN A 219 1 O VAL A 217 N LEU A 187 SHEET 8 A 8 VAL A 252 ILE A 254 1 O TYR A 253 N VAL A 216 SHEET 1 B 2 LYS A 466 LEU A 467 0 SHEET 2 B 2 LEU A 501 ASP A 502 -1 O LEU A 501 N LEU A 467 LINK OG1 THR A 72 MG MG A 700 1555 1555 2.25 LINK OD1 ASP A 494 CA CA A 701 1555 1555 2.55 LINK OD1 ASP A 496 CA CA A 701 1555 1555 2.48 LINK OD1 ASP A 498 CA CA A 701 1555 1555 2.34 LINK O MET A 500 CA CA A 701 1555 1555 2.64 LINK OE1 GLU A 505 CA CA A 701 1555 1555 2.51 LINK OE2 GLU A 505 CA CA A 701 1555 1555 2.68 LINK O2B ANP A 600 MG MG A 700 1555 1555 2.48 LINK O1G ANP A 600 MG MG A 700 1555 1555 1.85 SITE 1 AC1 3 THR A 72 THR A 94 ANP A 600 SITE 1 AC2 5 ASP A 494 ASP A 496 ASP A 498 MET A 500 SITE 2 AC2 5 GLU A 505 SITE 1 AC3 18 TYR A 67 SER A 68 THR A 69 GLY A 70 SITE 2 AC3 18 LYS A 71 THR A 72 SER A 73 VAL A 88 SITE 3 AC3 18 GLY A 89 THR A 93 THR A 94 GLY A 156 SITE 4 AC3 18 ASN A 219 LYS A 220 SER A 256 PHE A 257 SITE 5 AC3 18 TRP A 258 MG A 700 CRYST1 99.851 134.653 56.068 90.00 106.05 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010015 0.000000 0.002881 0.00000 SCALE2 0.000000 0.007426 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018559 0.00000