HEADER TRANSFERASE 25-JUL-07 2QQ0 TITLE THYMIDINE KINASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH THYMIDINE + TITLE 2 APPNHP COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TDK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS THYMIDINE KINASE, TMTK, APPNHP, OPEN-CONFORMATION, ATP-BINDING, KEYWDS 2 CYTOPLASM, DNA SYNTHESIS, NUCLEOTIDE-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.SEGURA-PENA,J.LICHTER,M.TRANI,M.KONRAD,A.LAVIE,S.LUTZ REVDAT 3 21-FEB-24 2QQ0 1 REMARK LINK REVDAT 2 30-DEC-08 2QQ0 1 JRNL VERSN REVDAT 1 16-OCT-07 2QQ0 0 JRNL AUTH D.SEGURA-PENA,J.LICHTER,M.TRANI,M.KONRAD,A.LAVIE,S.LUTZ JRNL TITL QUATERNARY STRUCTURE CHANGE AS A MECHANISM FOR THE JRNL TITL 2 REGULATION OF THYMIDINE KINASE 1-LIKE ENZYMES. JRNL REF STRUCTURE V. 15 1555 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 18073106 JRNL DOI 10.1016/J.STR.2007.09.025 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 49113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5515 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3045 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 354 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2659 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.397 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2801 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3787 ; 1.686 ; 2.023 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 5.491 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;34.038 ;24.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 510 ;13.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.998 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1986 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1476 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1940 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 384 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.047 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1712 ; 1.096 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2709 ; 1.790 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1219 ; 2.897 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1078 ; 4.608 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QQ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54800 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.45 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32000 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60-65% MPD + 0.1 M SODIUM ACETATE, PH REMARK 280 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.08000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.08000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TETRAMERIC BIOLOGICAL ASSEMBLY IS GENERATED FROM THE REMARK 300 DIMER IN THE ASSIMETRIC UNIT BY THE OPERATION (-X, Y, -Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11370 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 41 REMARK 465 ASP A 42 REMARK 465 SER A 43 REMARK 465 ARG A 44 REMARK 465 TYR A 45 REMARK 465 HIS A 46 REMARK 465 SER A 47 REMARK 465 SER A 54 REMARK 465 GLY A 55 REMARK 465 ASN A 56 REMARK 465 GLY A 57 REMARK 465 LYS A 182 REMARK 465 ARG A 183 REMARK 465 VAL A 184 REMARK 465 MET B 1 REMARK 465 ILE B 41 REMARK 465 ASP B 42 REMARK 465 SER B 43 REMARK 465 ARG B 44 REMARK 465 TYR B 45 REMARK 465 HIS B 46 REMARK 465 SER B 54 REMARK 465 GLY B 55 REMARK 465 ASN B 56 REMARK 465 GLY B 57 REMARK 465 LYS B 182 REMARK 465 ARG B 183 REMARK 465 VAL B 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 49 CG SD CE REMARK 470 VAL A 51 CG1 CG2 REMARK 470 VAL B 58 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 729 O HOH B 805 2.02 REMARK 500 O HOH A 646 O HOH A 764 2.03 REMARK 500 O HOH A 633 O HOH A 718 2.13 REMARK 500 OD1 ASP A 98 O HOH A 757 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 83 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 147 16.11 -148.72 REMARK 500 ASP A 162 101.30 -163.24 REMARK 500 ASN B 147 17.32 -145.18 REMARK 500 ASP B 162 101.16 -163.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 450 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 ANP A 601 O2B 90.5 REMARK 620 3 ANP A 601 O3G 173.9 95.6 REMARK 620 4 HOH A 616 O 80.6 96.1 98.9 REMARK 620 5 HOH A 617 O 86.9 170.1 87.1 92.9 REMARK 620 6 HOH A 749 O 88.8 86.6 91.4 169.0 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 140 SG REMARK 620 2 CYS A 143 SG 104.3 REMARK 620 3 CYS A 173 SG 116.5 120.6 REMARK 620 4 CYS A 176 SG 102.1 116.1 96.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 452 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 17 OG1 REMARK 620 2 TMP B 601 O1P 166.4 REMARK 620 3 ADP B 701 O2B 87.0 104.5 REMARK 620 4 HOH B 725 O 80.4 91.2 95.1 REMARK 620 5 HOH B 797 O 83.0 86.4 167.6 90.5 REMARK 620 6 HOH B 844 O 92.0 95.5 88.8 171.2 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 140 SG REMARK 620 2 CYS B 143 SG 102.6 REMARK 620 3 CYS B 173 SG 114.6 119.5 REMARK 620 4 CYS B 176 SG 103.6 119.4 96.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QPO RELATED DB: PDB REMARK 900 RELATED ID: 2QQE RELATED DB: PDB DBREF 2QQ0 A 1 184 UNP Q9WYN2 KITH_THEMA 1 184 DBREF 2QQ0 B 1 184 UNP Q9WYN2 KITH_THEMA 1 184 SEQRES 1 A 184 MET SER GLY LYS LEU THR VAL ILE THR GLY PRO MET TYR SEQRES 2 A 184 SER GLY LYS THR THR GLU LEU LEU SER PHE VAL GLU ILE SEQRES 3 A 184 TYR LYS LEU GLY LYS LYS LYS VAL ALA VAL PHE LYS PRO SEQRES 4 A 184 LYS ILE ASP SER ARG TYR HIS SER THR MET ILE VAL SER SEQRES 5 A 184 HIS SER GLY ASN GLY VAL GLU ALA HIS VAL ILE GLU ARG SEQRES 6 A 184 PRO GLU GLU MET ARG LYS TYR ILE GLU GLU ASP THR ARG SEQRES 7 A 184 GLY VAL PHE ILE ASP GLU VAL GLN PHE PHE ASN PRO SER SEQRES 8 A 184 LEU PHE GLU VAL VAL LYS ASP LEU LEU ASP ARG GLY ILE SEQRES 9 A 184 ASP VAL PHE CYS ALA GLY LEU ASP LEU THR HIS LYS GLN SEQRES 10 A 184 ASN PRO PHE GLU THR THR ALA LEU LEU LEU SER LEU ALA SEQRES 11 A 184 ASP THR VAL ILE LYS LYS LYS ALA VAL CYS HIS ARG CYS SEQRES 12 A 184 GLY GLU TYR ASN ALA THR LEU THR LEU LYS VAL ALA GLY SEQRES 13 A 184 GLY GLU GLU GLU ILE ASP VAL GLY GLY GLN GLU LYS TYR SEQRES 14 A 184 ILE ALA VAL CYS ARG ASP CYS TYR ASN THR LEU LYS LYS SEQRES 15 A 184 ARG VAL SEQRES 1 B 184 MET SER GLY LYS LEU THR VAL ILE THR GLY PRO MET TYR SEQRES 2 B 184 SER GLY LYS THR THR GLU LEU LEU SER PHE VAL GLU ILE SEQRES 3 B 184 TYR LYS LEU GLY LYS LYS LYS VAL ALA VAL PHE LYS PRO SEQRES 4 B 184 LYS ILE ASP SER ARG TYR HIS SER THR MET ILE VAL SER SEQRES 5 B 184 HIS SER GLY ASN GLY VAL GLU ALA HIS VAL ILE GLU ARG SEQRES 6 B 184 PRO GLU GLU MET ARG LYS TYR ILE GLU GLU ASP THR ARG SEQRES 7 B 184 GLY VAL PHE ILE ASP GLU VAL GLN PHE PHE ASN PRO SER SEQRES 8 B 184 LEU PHE GLU VAL VAL LYS ASP LEU LEU ASP ARG GLY ILE SEQRES 9 B 184 ASP VAL PHE CYS ALA GLY LEU ASP LEU THR HIS LYS GLN SEQRES 10 B 184 ASN PRO PHE GLU THR THR ALA LEU LEU LEU SER LEU ALA SEQRES 11 B 184 ASP THR VAL ILE LYS LYS LYS ALA VAL CYS HIS ARG CYS SEQRES 12 B 184 GLY GLU TYR ASN ALA THR LEU THR LEU LYS VAL ALA GLY SEQRES 13 B 184 GLY GLU GLU GLU ILE ASP VAL GLY GLY GLN GLU LYS TYR SEQRES 14 B 184 ILE ALA VAL CYS ARG ASP CYS TYR ASN THR LEU LYS LYS SEQRES 15 B 184 ARG VAL HET ZN A 400 1 HET MG A 450 1 HET THM A 501 17 HET ANP A 601 31 HET ZN B 402 1 HET MG B 452 1 HET TMP B 601 21 HET ADP B 701 27 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM THM THYMIDINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM TMP THYMIDINE-5'-PHOSPHATE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN THM DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 THM C10 H14 N2 O5 FORMUL 6 ANP C10 H17 N6 O12 P3 FORMUL 9 TMP C10 H15 N2 O8 P FORMUL 10 ADP C10 H15 N5 O10 P2 FORMUL 11 HOH *383(H2 O) HELIX 1 1 GLY A 15 GLY A 30 1 16 HELIX 2 2 ARG A 65 ILE A 73 5 9 HELIX 3 3 GLU A 84 PHE A 88 5 5 HELIX 4 4 ASN A 89 PRO A 90 5 2 HELIX 5 5 SER A 91 ARG A 102 1 12 HELIX 6 6 PHE A 120 ALA A 130 1 11 HELIX 7 7 CYS A 173 LYS A 181 1 9 HELIX 8 8 GLY B 15 GLY B 30 1 16 HELIX 9 9 ARG B 65 ILE B 73 5 9 HELIX 10 10 GLU B 84 PHE B 88 5 5 HELIX 11 11 ASN B 89 PRO B 90 5 2 HELIX 12 12 SER B 91 ARG B 102 1 12 HELIX 13 13 PHE B 120 ALA B 130 1 11 HELIX 14 14 CYS B 173 LYS B 181 1 9 SHEET 1 A 6 HIS A 61 ILE A 63 0 SHEET 2 A 6 LYS A 33 PRO A 39 1 N VAL A 36 O HIS A 61 SHEET 3 A 6 THR A 77 ILE A 82 1 O ARG A 78 N LYS A 33 SHEET 4 A 6 ASP A 105 LEU A 111 1 O PHE A 107 N ILE A 82 SHEET 5 A 6 LEU A 5 GLY A 10 1 N ILE A 8 O CYS A 108 SHEET 6 A 6 THR A 132 LYS A 135 1 O ILE A 134 N THR A 9 SHEET 1 B 2 LEU A 150 LYS A 153 0 SHEET 2 B 2 TYR A 169 VAL A 172 -1 O ILE A 170 N LEU A 152 SHEET 1 C 6 HIS B 61 ILE B 63 0 SHEET 2 C 6 LYS B 33 PRO B 39 1 N VAL B 36 O HIS B 61 SHEET 3 C 6 THR B 77 ILE B 82 1 O PHE B 81 N PHE B 37 SHEET 4 C 6 ASP B 105 GLY B 110 1 O PHE B 107 N ILE B 82 SHEET 5 C 6 LEU B 5 THR B 9 1 N ILE B 8 O CYS B 108 SHEET 6 C 6 THR B 132 LYS B 135 1 O ILE B 134 N VAL B 7 SHEET 1 D 2 LEU B 150 LYS B 153 0 SHEET 2 D 2 TYR B 169 VAL B 172 -1 O ILE B 170 N LEU B 152 LINK OG1 THR A 17 MG MG A 450 1555 1555 2.15 LINK SG CYS A 140 ZN ZN A 400 1555 1555 2.31 LINK SG CYS A 143 ZN ZN A 400 1555 1555 2.39 LINK SG CYS A 173 ZN ZN A 400 1555 1555 2.34 LINK SG CYS A 176 ZN ZN A 400 1555 1555 2.50 LINK MG MG A 450 O2B ANP A 601 1555 1555 2.02 LINK MG MG A 450 O3G ANP A 601 1555 1555 1.98 LINK MG MG A 450 O HOH A 616 1555 1555 2.22 LINK MG MG A 450 O HOH A 617 1555 1555 2.17 LINK MG MG A 450 O HOH A 749 1555 1555 2.12 LINK OG1 THR B 17 MG MG B 452 1555 1555 2.15 LINK SG CYS B 140 ZN ZN B 402 1555 1555 2.37 LINK SG CYS B 143 ZN ZN B 402 1555 1555 2.35 LINK SG CYS B 173 ZN ZN B 402 1555 1555 2.39 LINK SG CYS B 176 ZN ZN B 402 1555 1555 2.32 LINK MG MG B 452 O1P TMP B 601 1555 1555 1.96 LINK MG MG B 452 O2B ADP B 701 1555 1555 1.92 LINK MG MG B 452 O HOH B 725 1555 1555 2.22 LINK MG MG B 452 O HOH B 797 1555 1555 2.11 LINK MG MG B 452 O HOH B 844 1555 1555 2.11 SITE 1 AC1 4 CYS A 140 CYS A 143 CYS A 173 CYS A 176 SITE 1 AC2 4 CYS B 140 CYS B 143 CYS B 173 CYS B 176 SITE 1 AC3 5 THR A 17 ANP A 601 HOH A 616 HOH A 617 SITE 2 AC3 5 HOH A 749 SITE 1 AC4 6 THR B 17 TMP B 601 ADP B 701 HOH B 725 SITE 2 AC4 6 HOH B 797 HOH B 844 SITE 1 AC5 16 GLU A 84 GLN A 86 PHE A 87 LEU A 111 SITE 2 AC5 16 THR A 114 HIS A 115 THR A 151 GLU A 160 SITE 3 AC5 16 ILE A 161 ASP A 162 VAL A 163 GLY A 164 SITE 4 AC5 16 TYR A 169 ANP A 601 HOH A 675 HOH A 767 SITE 1 AC6 24 MET B 12 LYS B 16 HIS B 53 GLU B 84 SITE 2 AC6 24 GLN B 86 PHE B 87 LEU B 111 THR B 114 SITE 3 AC6 24 HIS B 115 THR B 151 GLU B 160 ILE B 161 SITE 4 AC6 24 ASP B 162 VAL B 163 GLY B 164 TYR B 169 SITE 5 AC6 24 MG B 452 ADP B 701 HOH B 717 HOH B 725 SITE 6 AC6 24 HOH B 774 HOH B 797 HOH B 798 HOH B 844 SITE 1 AC7 23 MET A 12 TYR A 13 SER A 14 GLY A 15 SITE 2 AC7 23 LYS A 16 THR A 17 THR A 18 SER A 52 SITE 3 AC7 23 HIS A 53 GLU A 84 ALA A 138 VAL A 139 SITE 4 AC7 23 GLN A 166 MG A 450 THM A 501 HOH A 617 SITE 5 AC7 23 HOH A 640 HOH A 643 HOH A 675 HOH A 708 SITE 6 AC7 23 HOH A 749 GLU B 25 LEU B 29 SITE 1 AC8 20 GLU A 25 LEU A 29 TYR B 13 SER B 14 SITE 2 AC8 20 GLY B 15 LYS B 16 THR B 17 THR B 18 SITE 3 AC8 20 SER B 52 HIS B 53 ALA B 138 VAL B 139 SITE 4 AC8 20 MG B 452 TMP B 601 HOH B 725 HOH B 811 SITE 5 AC8 20 HOH B 828 HOH B 843 HOH B 844 HOH B 882 CRYST1 102.160 59.310 61.300 90.00 103.02 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009789 0.000000 0.002264 0.00000 SCALE2 0.000000 0.016861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016744 0.00000