HEADER OXIDOREDUCTASE 26-JUL-07 2QQR TITLE JMJD2A HYBRID TUDOR DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HYBRID TUDOR DOMAINS (RESIDUES: 897-1011); COMPND 5 SYNONYM: JUMONJI DOMAIN-CONTAINING PROTEIN 2A; COMPND 6 EC: 1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JMJD2A, JHDM3A, JMJD2, KIAA0677; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTEV KEYWDS HISTONE LYSINE DEMETHYLASE, TANDEM HYBRID TUDOR DOMAINS, METAL KEYWDS 2 BINDING PROTEIN, CHROMATIN REGULATOR, DIOXYGENASE, HOST-VIRUS KEYWDS 3 INTERACTION, IRON, METAL-BINDING, NUCLEUS, OXIDOREDUCTASE, KEYWDS 4 PHOSPHORYLATION, POLYMORPHISM, TRANSCRIPTION, TRANSCRIPTION KEYWDS 5 REGULATION, ZINC, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR J.LEE,M.V.BOTUYAN,G.MER REVDAT 7 06-NOV-24 2QQR 1 REMARK REVDAT 6 15-NOV-23 2QQR 1 REMARK REVDAT 5 30-AUG-23 2QQR 1 REMARK SEQADV LINK REVDAT 4 24-FEB-09 2QQR 1 VERSN REVDAT 3 29-JAN-08 2QQR 1 JRNL REVDAT 2 08-JAN-08 2QQR 1 JRNL REVDAT 1 11-DEC-07 2QQR 0 JRNL AUTH J.LEE,J.R.THOMPSON,M.V.BOTUYAN,G.MER JRNL TITL DISTINCT BINDING MODES SPECIFY THE RECOGNITION OF METHYLATED JRNL TITL 2 HISTONES H3K4 AND H4K20 BY JMJD2A-TUDOR. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 109 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18084306 JRNL DOI 10.1038/NSMB1326 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1854 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2586 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1896 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.105 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2127 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2923 ; 1.601 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 7.254 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;36.499 ;25.214 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;14.160 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 7.921 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 308 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1688 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 976 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1449 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 273 ; 0.216 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 46 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1287 ; 1.271 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2065 ; 1.756 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 942 ; 2.857 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 837 ; 4.001 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000043937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97913 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35286 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.40 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 57.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.10 REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2GFA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 67.12100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.12100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.12100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.12100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 67.12100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.12100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 67.12100 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 67.12100 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 67.12100 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 67.12100 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 67.12100 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 67.12100 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 67.12100 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 67.12100 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 67.12100 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 67.12100 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 67.12100 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 67.12100 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 67.12100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.12100 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 67.12100 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 67.12100 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 67.12100 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 67.12100 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 67.12100 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 67.12100 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 67.12100 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 67.12100 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 67.12100 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 67.12100 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 67.12100 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 67.12100 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 67.12100 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 67.12100 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 67.12100 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 67.12100 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1036 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1035 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 1009 O HOH B 1145 1.50 REMARK 500 OE1 GLU A 1009 O HOH A 1134 1.52 REMARK 500 NE2 HIS A 981 O HOH A 1129 1.78 REMARK 500 NE2 HIS B 981 O HOH B 1074 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1041 O HOH B 1111 8544 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE A 896 -91.73 40.16 REMARK 500 ASN A 940 36.43 -143.07 REMARK 500 HIS B 895 -159.85 -142.36 REMARK 500 MSE B 896 -89.28 36.05 REMARK 500 ASN B 940 37.21 -143.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 895 MSE A 896 43.03 REMARK 500 HIS B 895 MSE B 896 40.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QQS RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN THE PRESENCE OF METHYLATED PEPTIDE LIGAND. DBREF 2QQR A 897 1011 UNP O75164 JHD3A_HUMAN 897 1011 DBREF 2QQR B 897 1011 UNP O75164 JHD3A_HUMAN 897 1011 SEQADV 2QQR GLY A 894 UNP O75164 EXPRESSION TAG SEQADV 2QQR HIS A 895 UNP O75164 EXPRESSION TAG SEQADV 2QQR MSE A 896 UNP O75164 EXPRESSION TAG SEQADV 2QQR GLY B 894 UNP O75164 EXPRESSION TAG SEQADV 2QQR HIS B 895 UNP O75164 EXPRESSION TAG SEQADV 2QQR MSE B 896 UNP O75164 EXPRESSION TAG SEQRES 1 A 118 GLY HIS MSE GLN SER ILE THR ALA GLY GLN LYS VAL ILE SEQRES 2 A 118 SER LYS HIS LYS ASN GLY ARG PHE TYR GLN CYS GLU VAL SEQRES 3 A 118 VAL ARG LEU THR THR GLU THR PHE TYR GLU VAL ASN PHE SEQRES 4 A 118 ASP ASP GLY SER PHE SER ASP ASN LEU TYR PRO GLU ASP SEQRES 5 A 118 ILE VAL SER GLN ASP CYS LEU GLN PHE GLY PRO PRO ALA SEQRES 6 A 118 GLU GLY GLU VAL VAL GLN VAL ARG TRP THR ASP GLY GLN SEQRES 7 A 118 VAL TYR GLY ALA LYS PHE VAL ALA SER HIS PRO ILE GLN SEQRES 8 A 118 MSE TYR GLN VAL GLU PHE GLU ASP GLY SER GLN LEU VAL SEQRES 9 A 118 VAL LYS ARG ASP ASP VAL TYR THR LEU ASP GLU GLU LEU SEQRES 10 A 118 PRO SEQRES 1 B 118 GLY HIS MSE GLN SER ILE THR ALA GLY GLN LYS VAL ILE SEQRES 2 B 118 SER LYS HIS LYS ASN GLY ARG PHE TYR GLN CYS GLU VAL SEQRES 3 B 118 VAL ARG LEU THR THR GLU THR PHE TYR GLU VAL ASN PHE SEQRES 4 B 118 ASP ASP GLY SER PHE SER ASP ASN LEU TYR PRO GLU ASP SEQRES 5 B 118 ILE VAL SER GLN ASP CYS LEU GLN PHE GLY PRO PRO ALA SEQRES 6 B 118 GLU GLY GLU VAL VAL GLN VAL ARG TRP THR ASP GLY GLN SEQRES 7 B 118 VAL TYR GLY ALA LYS PHE VAL ALA SER HIS PRO ILE GLN SEQRES 8 B 118 MSE TYR GLN VAL GLU PHE GLU ASP GLY SER GLN LEU VAL SEQRES 9 B 118 VAL LYS ARG ASP ASP VAL TYR THR LEU ASP GLU GLU LEU SEQRES 10 B 118 PRO MODRES 2QQR MSE A 896 MET SELENOMETHIONINE MODRES 2QQR MSE A 985 MET SELENOMETHIONINE MODRES 2QQR MSE B 896 MET SELENOMETHIONINE MODRES 2QQR MSE B 985 MET SELENOMETHIONINE HET MSE A 896 8 HET MSE A 985 8 HET MSE B 896 8 HET MSE B 985 8 HET SO4 A 1 5 HET SO4 A 3 5 HET SO4 A 6 5 HET SO4 B 2 5 HET SO4 B 4 5 HET SO4 B 5 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *303(H2 O) HELIX 1 1 TYR A 942 ILE A 946 5 5 HELIX 2 2 ASP A 950 GLY A 955 1 6 HELIX 3 3 LYS A 999 ASP A 1001 5 3 HELIX 4 4 TYR B 942 ILE B 946 5 5 HELIX 5 5 ASP B 950 GLY B 955 1 6 HELIX 6 6 LYS B 999 ASP B 1001 5 3 SHEET 1 A 4 PHE A 937 LEU A 941 0 SHEET 2 A 4 PHE A 914 PHE A 932 -1 N TYR A 928 O LEU A 941 SHEET 3 A 4 VAL A 972 PHE A 990 -1 O MSE A 985 N THR A 923 SHEET 4 A 4 GLN A 995 VAL A 998 -1 O VAL A 998 N TYR A 986 SHEET 1 B 5 VAL A 962 ARG A 966 0 SHEET 2 B 5 VAL A 972 PHE A 990 -1 O TYR A 973 N VAL A 965 SHEET 3 B 5 PHE A 914 PHE A 932 -1 N THR A 923 O MSE A 985 SHEET 4 B 5 LYS A 904 LYS A 908 -1 N VAL A 905 O CYS A 917 SHEET 5 B 5 VAL A1003 THR A1005 -1 O TYR A1004 N ILE A 906 SHEET 1 C 4 PHE B 937 LEU B 941 0 SHEET 2 C 4 PHE B 914 PHE B 932 -1 N TYR B 928 O LEU B 941 SHEET 3 C 4 VAL B 972 PHE B 990 -1 O MSE B 985 N THR B 923 SHEET 4 C 4 GLN B 995 VAL B 998 -1 O VAL B 998 N TYR B 986 SHEET 1 D 5 VAL B 962 ARG B 966 0 SHEET 2 D 5 VAL B 972 PHE B 990 -1 O TYR B 973 N VAL B 965 SHEET 3 D 5 PHE B 914 PHE B 932 -1 N THR B 923 O MSE B 985 SHEET 4 D 5 LYS B 904 LYS B 908 -1 N VAL B 905 O CYS B 917 SHEET 5 D 5 VAL B1003 THR B1005 -1 O TYR B1004 N ILE B 906 LINK C HIS A 895 N MSE A 896 1555 1555 1.34 LINK C MSE A 896 N GLN A 897 1555 1555 1.33 LINK C GLN A 984 N MSE A 985 1555 1555 1.33 LINK C MSE A 985 N TYR A 986 1555 1555 1.33 LINK C HIS B 895 N MSE B 896 1555 1555 1.35 LINK C MSE B 896 N GLN B 897 1555 1555 1.34 LINK C GLN B 984 N MSE B 985 1555 1555 1.33 LINK C MSE B 985 N TYR B 986 1555 1555 1.33 CISPEP 1 GLY A 894 HIS A 895 0 -15.61 CISPEP 2 LEU A 1010 PRO A 1011 0 -9.89 CISPEP 3 GLY B 894 HIS B 895 0 -15.05 CISPEP 4 LEU B 1010 PRO B 1011 0 -10.15 SITE 1 AC1 6 LYS A 910 SER A 994 GLN A 995 HOH A1035 SITE 2 AC1 6 HOH A1080 HOH A1132 SITE 1 AC2 4 ARG A 921 ARG A 966 GLN A 987 HOH A1152 SITE 1 AC3 6 HIS A 909 TYR A 915 PHE A 990 GLU A 991 SITE 2 AC3 6 ASP A 992 HOH A1114 SITE 1 AC4 5 LYS B 910 SER B 994 GLN B 995 HOH B1036 SITE 2 AC4 5 HOH B1097 SITE 1 AC5 4 ARG B 921 ARG B 966 GLN B 987 HOH B1153 SITE 1 AC6 7 HIS B 909 TYR B 915 PHE B 990 GLU B 991 SITE 2 AC6 7 ASP B 992 HOH B1031 HOH B1099 CRYST1 134.242 134.242 134.242 90.00 90.00 90.00 I 21 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007449 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007449 0.00000