data_2QQY # _entry.id 2QQY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QQY RCSB RCSB043944 WWPDB D_1000043944 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC89126 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2QQY _pdbx_database_status.recvd_initial_deposition_date 2007-07-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, Y.' 1 'Joachimiak, G.' 2 'Wu, R.' 3 'Patterson, S.' 4 'Gornicki, P.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 # _citation.id primary _citation.title 'Crystal Structure of Ferritin like, Diiron-carboxylate Proteins from Bacillus anthracis str. Ames.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kim, Y.' 1 primary 'Joachimiak, G.' 2 primary 'Wu, R.' 3 primary 'Patterson, S.' 4 primary 'Gornicki, P.' 5 primary 'Joachimiak, A.' 6 # _cell.entry_id 2QQY _cell.length_a 100.225 _cell.length_b 100.225 _cell.length_c 100.225 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QQY _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sigma B operon' 17414.543 1 ? ? ? ? 2 water nat water 18.015 128 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Putative bacterial ferritin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)SHDVKELIEGLNEDLAGEYSAII(MSE)YNHNAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGT PTTIPLRVKQAEDVRE(MSE)LEYARQSEYETIKRYEKRKEQAANLN(MSE)TELVVKLED(MSE)IADETNH(MSE)EE LDRLLNDKA(MSE)VLN ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMSHDVKELIEGLNEDLAGEYSAIIMYNHNAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLRV KQAEDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLLNDKAMVLN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC89126 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 SER n 1 6 HIS n 1 7 ASP n 1 8 VAL n 1 9 LYS n 1 10 GLU n 1 11 LEU n 1 12 ILE n 1 13 GLU n 1 14 GLY n 1 15 LEU n 1 16 ASN n 1 17 GLU n 1 18 ASP n 1 19 LEU n 1 20 ALA n 1 21 GLY n 1 22 GLU n 1 23 TYR n 1 24 SER n 1 25 ALA n 1 26 ILE n 1 27 ILE n 1 28 MSE n 1 29 TYR n 1 30 ASN n 1 31 HIS n 1 32 ASN n 1 33 ALA n 1 34 ALA n 1 35 THR n 1 36 VAL n 1 37 SER n 1 38 GLY n 1 39 ILE n 1 40 TYR n 1 41 ARG n 1 42 GLN n 1 43 VAL n 1 44 LEU n 1 45 LYS n 1 46 PRO n 1 47 PHE n 1 48 PHE n 1 49 GLU n 1 50 SER n 1 51 GLU n 1 52 ILE n 1 53 SER n 1 54 ASP n 1 55 GLU n 1 56 GLN n 1 57 GLY n 1 58 HIS n 1 59 ALA n 1 60 LEU n 1 61 TYR n 1 62 LEU n 1 63 ALA n 1 64 GLU n 1 65 LYS n 1 66 ILE n 1 67 LYS n 1 68 THR n 1 69 LEU n 1 70 GLY n 1 71 GLY n 1 72 THR n 1 73 PRO n 1 74 THR n 1 75 THR n 1 76 ILE n 1 77 PRO n 1 78 LEU n 1 79 ARG n 1 80 VAL n 1 81 LYS n 1 82 GLN n 1 83 ALA n 1 84 GLU n 1 85 ASP n 1 86 VAL n 1 87 ARG n 1 88 GLU n 1 89 MSE n 1 90 LEU n 1 91 GLU n 1 92 TYR n 1 93 ALA n 1 94 ARG n 1 95 GLN n 1 96 SER n 1 97 GLU n 1 98 TYR n 1 99 GLU n 1 100 THR n 1 101 ILE n 1 102 LYS n 1 103 ARG n 1 104 TYR n 1 105 GLU n 1 106 LYS n 1 107 ARG n 1 108 LYS n 1 109 GLU n 1 110 GLN n 1 111 ALA n 1 112 ALA n 1 113 ASN n 1 114 LEU n 1 115 ASN n 1 116 MSE n 1 117 THR n 1 118 GLU n 1 119 LEU n 1 120 VAL n 1 121 VAL n 1 122 LYS n 1 123 LEU n 1 124 GLU n 1 125 ASP n 1 126 MSE n 1 127 ILE n 1 128 ALA n 1 129 ASP n 1 130 GLU n 1 131 THR n 1 132 ASN n 1 133 HIS n 1 134 MSE n 1 135 GLU n 1 136 GLU n 1 137 LEU n 1 138 ASP n 1 139 ARG n 1 140 LEU n 1 141 LEU n 1 142 ASN n 1 143 ASP n 1 144 LYS n 1 145 ALA n 1 146 MSE n 1 147 VAL n 1 148 LEU n 1 149 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Bacillus _entity_src_gen.pdbx_gene_src_gene 'BAS0929, BA_0993, GBAA0993' _entity_src_gen.gene_src_species 'Bacillus anthracis' _entity_src_gen.gene_src_strain Ames _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus anthracis str.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 198094 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9K5J5_BACAN _struct_ref.pdbx_db_accession Q9K5J5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSHDVKELIEGLNEDLAGEYSAIIMYNHNAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLRVKQA EDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLLNDKAMVLN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QQY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 149 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9K5J5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 146 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 146 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QQY SER A 1 ? UNP Q9K5J5 ? ? 'EXPRESSION TAG' -2 1 1 2QQY ASN A 2 ? UNP Q9K5J5 ? ? 'EXPRESSION TAG' -1 2 1 2QQY ALA A 3 ? UNP Q9K5J5 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QQY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.45 _exptl_crystal.density_percent_sol 49.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '0.5 M Lithium sulfate, 2 % PEG 8000, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-07-03 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL, SI111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97950 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength 0.97950 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 2QQY _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 31.690 _reflns.d_resolution_high 2.000 _reflns.number_obs 11458 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.08600 _reflns.pdbx_netI_over_sigmaI 15.2000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 39.600 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.43900 _reflns_shell.meanI_over_sigI_obs 11.90 _reflns_shell.pdbx_redundancy 32.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QQY _refine.ls_number_reflns_obs 10304 _refine.ls_number_reflns_all 10304 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 31.69 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.245 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.800 _refine.ls_number_reflns_R_free 1125 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.911 _refine.B_iso_mean 33.75 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.205 _refine.pdbx_overall_ESU_R_Free 0.183 _refine.overall_SU_ML 0.120 _refine.overall_SU_B 4.169 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1122 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 128 _refine_hist.number_atoms_total 1250 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 31.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.022 ? 1189 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.421 1.975 ? 1608 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.136 5.000 ? 148 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.263 25.469 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.262 15.000 ? 232 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.794 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.096 0.200 ? 177 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 910 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.217 0.200 ? 610 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.303 0.200 ? 835 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.175 0.200 ? 106 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.254 0.200 ? 40 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.110 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.226 1.500 ? 760 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.648 2.000 ? 1168 'X-RAY DIFFRACTION' ? r_scbond_it 3.201 3.000 ? 495 'X-RAY DIFFRACTION' ? r_scangle_it 4.944 4.500 ? 440 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.05 _refine_ls_shell.number_reflns_R_work 740 _refine_ls_shell.R_factor_R_work 0.1980 _refine_ls_shell.percent_reflns_obs 96.93 _refine_ls_shell.R_factor_R_free 0.2880 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 81 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QQY _struct.title 'Crystal structure of ferritin like, diiron-carboxylate proteins from Bacillus anthracis str. Ames' _struct.pdbx_descriptor 'Sigma B operon' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QQY _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;dodecameric alpha-helical, ferritin fold, Structural Genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 5 ? VAL A 36 ? SER A 2 VAL A 33 1 ? 32 HELX_P HELX_P2 2 TYR A 40 ? LEU A 69 ? TYR A 37 LEU A 66 1 ? 30 HELX_P HELX_P3 3 ASP A 85 ? LEU A 114 ? ASP A 82 LEU A 111 1 ? 30 HELX_P HELX_P4 4 MSE A 116 ? ASN A 142 ? MSE A 113 ASN A 139 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 4 C ? ? ? 1_555 A SER 5 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A ILE 27 C ? ? ? 1_555 A MSE 28 N ? ? A ILE 24 A MSE 25 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A MSE 28 C ? ? ? 1_555 A TYR 29 N ? ? A MSE 25 A TYR 26 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A GLU 88 C ? ? ? 1_555 A MSE 89 N ? ? A GLU 85 A MSE 86 1_555 ? ? ? ? ? ? ? 1.320 ? covale5 covale ? ? A MSE 89 C ? ? ? 1_555 A LEU 90 N ? ? A MSE 86 A LEU 87 1_555 ? ? ? ? ? ? ? 1.342 ? covale6 covale ? ? A ASN 115 C ? ? ? 1_555 A MSE 116 N ? ? A ASN 112 A MSE 113 1_555 ? ? ? ? ? ? ? 1.331 ? covale7 covale ? ? A MSE 116 C ? ? ? 1_555 A THR 117 N ? ? A MSE 113 A THR 114 1_555 ? ? ? ? ? ? ? 1.345 ? covale8 covale ? ? A ASP 125 C ? ? ? 1_555 A MSE 126 N ? ? A ASP 122 A MSE 123 1_555 ? ? ? ? ? ? ? 1.327 ? covale9 covale ? ? A MSE 126 C ? ? ? 1_555 A ILE 127 N ? ? A MSE 123 A ILE 124 1_555 ? ? ? ? ? ? ? 1.332 ? covale10 covale ? ? A HIS 133 C ? ? ? 1_555 A MSE 134 N ? ? A HIS 130 A MSE 131 1_555 ? ? ? ? ? ? ? 1.330 ? covale11 covale ? ? A MSE 134 C ? ? ? 1_555 A GLU 135 N ? ? A MSE 131 A GLU 132 1_555 ? ? ? ? ? ? ? 1.344 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2QQY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2QQY _atom_sites.fract_transf_matrix[1][1] 0.009978 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009978 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009978 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 SER 5 2 2 SER SER A . n A 1 6 HIS 6 3 3 HIS HIS A . n A 1 7 ASP 7 4 4 ASP ASP A . n A 1 8 VAL 8 5 5 VAL VAL A . n A 1 9 LYS 9 6 6 LYS LYS A . n A 1 10 GLU 10 7 7 GLU GLU A . n A 1 11 LEU 11 8 8 LEU LEU A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 GLU 13 10 10 GLU GLU A . n A 1 14 GLY 14 11 11 GLY GLY A . n A 1 15 LEU 15 12 12 LEU LEU A . n A 1 16 ASN 16 13 13 ASN ASN A . n A 1 17 GLU 17 14 14 GLU GLU A . n A 1 18 ASP 18 15 15 ASP ASP A . n A 1 19 LEU 19 16 16 LEU LEU A . n A 1 20 ALA 20 17 17 ALA ALA A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 GLU 22 19 19 GLU GLU A . n A 1 23 TYR 23 20 20 TYR TYR A . n A 1 24 SER 24 21 21 SER SER A . n A 1 25 ALA 25 22 22 ALA ALA A . n A 1 26 ILE 26 23 23 ILE ILE A . n A 1 27 ILE 27 24 24 ILE ILE A . n A 1 28 MSE 28 25 25 MSE MSE A . n A 1 29 TYR 29 26 26 TYR TYR A . n A 1 30 ASN 30 27 27 ASN ASN A . n A 1 31 HIS 31 28 28 HIS HIS A . n A 1 32 ASN 32 29 29 ASN ASN A . n A 1 33 ALA 33 30 30 ALA ALA A . n A 1 34 ALA 34 31 31 ALA ALA A . n A 1 35 THR 35 32 32 THR THR A . n A 1 36 VAL 36 33 33 VAL VAL A . n A 1 37 SER 37 34 34 SER SER A . n A 1 38 GLY 38 35 35 GLY GLY A . n A 1 39 ILE 39 36 36 ILE ILE A . n A 1 40 TYR 40 37 37 TYR TYR A . n A 1 41 ARG 41 38 38 ARG ARG A . n A 1 42 GLN 42 39 39 GLN GLN A . n A 1 43 VAL 43 40 40 VAL VAL A . n A 1 44 LEU 44 41 41 LEU LEU A . n A 1 45 LYS 45 42 42 LYS LYS A . n A 1 46 PRO 46 43 43 PRO PRO A . n A 1 47 PHE 47 44 44 PHE PHE A . n A 1 48 PHE 48 45 45 PHE PHE A . n A 1 49 GLU 49 46 46 GLU GLU A . n A 1 50 SER 50 47 47 SER SER A . n A 1 51 GLU 51 48 48 GLU GLU A . n A 1 52 ILE 52 49 49 ILE ILE A . n A 1 53 SER 53 50 50 SER SER A . n A 1 54 ASP 54 51 51 ASP ASP A . n A 1 55 GLU 55 52 52 GLU GLU A . n A 1 56 GLN 56 53 53 GLN GLN A . n A 1 57 GLY 57 54 54 GLY GLY A . n A 1 58 HIS 58 55 55 HIS HIS A . n A 1 59 ALA 59 56 56 ALA ALA A . n A 1 60 LEU 60 57 57 LEU LEU A . n A 1 61 TYR 61 58 58 TYR TYR A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 ALA 63 60 60 ALA ALA A . n A 1 64 GLU 64 61 61 GLU GLU A . n A 1 65 LYS 65 62 62 LYS LYS A . n A 1 66 ILE 66 63 63 ILE ILE A . n A 1 67 LYS 67 64 64 LYS LYS A . n A 1 68 THR 68 65 65 THR THR A . n A 1 69 LEU 69 66 66 LEU LEU A . n A 1 70 GLY 70 67 67 GLY GLY A . n A 1 71 GLY 71 68 68 GLY GLY A . n A 1 72 THR 72 69 69 THR THR A . n A 1 73 PRO 73 70 70 PRO PRO A . n A 1 74 THR 74 71 71 THR THR A . n A 1 75 THR 75 72 72 THR THR A . n A 1 76 ILE 76 73 73 ILE ILE A . n A 1 77 PRO 77 74 74 PRO PRO A . n A 1 78 LEU 78 75 75 LEU LEU A . n A 1 79 ARG 79 76 76 ARG ARG A . n A 1 80 VAL 80 77 77 VAL VAL A . n A 1 81 LYS 81 78 78 LYS LYS A . n A 1 82 GLN 82 79 79 GLN GLN A . n A 1 83 ALA 83 80 80 ALA ALA A . n A 1 84 GLU 84 81 81 GLU GLU A . n A 1 85 ASP 85 82 82 ASP ASP A . n A 1 86 VAL 86 83 83 VAL VAL A . n A 1 87 ARG 87 84 84 ARG ARG A . n A 1 88 GLU 88 85 85 GLU GLU A . n A 1 89 MSE 89 86 86 MSE MSE A . n A 1 90 LEU 90 87 87 LEU LEU A . n A 1 91 GLU 91 88 88 GLU GLU A . n A 1 92 TYR 92 89 89 TYR TYR A . n A 1 93 ALA 93 90 90 ALA ALA A . n A 1 94 ARG 94 91 91 ARG ARG A . n A 1 95 GLN 95 92 92 GLN GLN A . n A 1 96 SER 96 93 93 SER SER A . n A 1 97 GLU 97 94 94 GLU GLU A . n A 1 98 TYR 98 95 95 TYR TYR A . n A 1 99 GLU 99 96 96 GLU GLU A . n A 1 100 THR 100 97 97 THR THR A . n A 1 101 ILE 101 98 98 ILE ILE A . n A 1 102 LYS 102 99 99 LYS LYS A . n A 1 103 ARG 103 100 100 ARG ARG A . n A 1 104 TYR 104 101 101 TYR TYR A . n A 1 105 GLU 105 102 102 GLU GLU A . n A 1 106 LYS 106 103 103 LYS LYS A . n A 1 107 ARG 107 104 104 ARG ARG A . n A 1 108 LYS 108 105 105 LYS LYS A . n A 1 109 GLU 109 106 106 GLU GLU A . n A 1 110 GLN 110 107 107 GLN GLN A . n A 1 111 ALA 111 108 108 ALA ALA A . n A 1 112 ALA 112 109 109 ALA ALA A . n A 1 113 ASN 113 110 110 ASN ASN A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 ASN 115 112 112 ASN ASN A . n A 1 116 MSE 116 113 113 MSE MSE A . n A 1 117 THR 117 114 114 THR THR A . n A 1 118 GLU 118 115 115 GLU GLU A . n A 1 119 LEU 119 116 116 LEU LEU A . n A 1 120 VAL 120 117 117 VAL VAL A . n A 1 121 VAL 121 118 118 VAL VAL A . n A 1 122 LYS 122 119 119 LYS LYS A . n A 1 123 LEU 123 120 120 LEU LEU A . n A 1 124 GLU 124 121 121 GLU GLU A . n A 1 125 ASP 125 122 122 ASP ASP A . n A 1 126 MSE 126 123 123 MSE MSE A . n A 1 127 ILE 127 124 124 ILE ILE A . n A 1 128 ALA 128 125 125 ALA ALA A . n A 1 129 ASP 129 126 126 ASP ASP A . n A 1 130 GLU 130 127 127 GLU GLU A . n A 1 131 THR 131 128 128 THR THR A . n A 1 132 ASN 132 129 129 ASN ASN A . n A 1 133 HIS 133 130 130 HIS HIS A . n A 1 134 MSE 134 131 131 MSE MSE A . n A 1 135 GLU 135 132 132 GLU GLU A . n A 1 136 GLU 136 133 133 GLU GLU A . n A 1 137 LEU 137 134 134 LEU LEU A . n A 1 138 ASP 138 135 135 ASP ASP A . n A 1 139 ARG 139 136 136 ARG ARG A . n A 1 140 LEU 140 137 137 LEU LEU A . n A 1 141 LEU 141 138 138 LEU LEU A . n A 1 142 ASN 142 139 139 ASN ASN A . n A 1 143 ASP 143 140 ? ? ? A . n A 1 144 LYS 144 141 ? ? ? A . n A 1 145 ALA 145 142 ? ? ? A . n A 1 146 MSE 146 143 ? ? ? A . n A 1 147 VAL 147 144 ? ? ? A . n A 1 148 LEU 148 145 ? ? ? A . n A 1 149 ASN 149 146 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 147 1 HOH HOH A . B 2 HOH 2 148 2 HOH HOH A . B 2 HOH 3 149 3 HOH HOH A . B 2 HOH 4 150 4 HOH HOH A . B 2 HOH 5 151 5 HOH HOH A . B 2 HOH 6 152 6 HOH HOH A . B 2 HOH 7 153 7 HOH HOH A . B 2 HOH 8 154 8 HOH HOH A . B 2 HOH 9 155 9 HOH HOH A . B 2 HOH 10 156 10 HOH HOH A . B 2 HOH 11 157 11 HOH HOH A . B 2 HOH 12 158 12 HOH HOH A . B 2 HOH 13 159 13 HOH HOH A . B 2 HOH 14 160 14 HOH HOH A . B 2 HOH 15 161 15 HOH HOH A . B 2 HOH 16 162 16 HOH HOH A . B 2 HOH 17 163 17 HOH HOH A . B 2 HOH 18 164 18 HOH HOH A . B 2 HOH 19 165 19 HOH HOH A . B 2 HOH 20 166 20 HOH HOH A . B 2 HOH 21 167 21 HOH HOH A . B 2 HOH 22 168 22 HOH HOH A . B 2 HOH 23 169 23 HOH HOH A . B 2 HOH 24 170 24 HOH HOH A . B 2 HOH 25 171 25 HOH HOH A . B 2 HOH 26 172 26 HOH HOH A . B 2 HOH 27 173 27 HOH HOH A . B 2 HOH 28 174 28 HOH HOH A . B 2 HOH 29 175 29 HOH HOH A . B 2 HOH 30 176 30 HOH HOH A . B 2 HOH 31 177 31 HOH HOH A . B 2 HOH 32 178 32 HOH HOH A . B 2 HOH 33 179 33 HOH HOH A . B 2 HOH 34 180 34 HOH HOH A . B 2 HOH 35 181 35 HOH HOH A . B 2 HOH 36 182 36 HOH HOH A . B 2 HOH 37 183 37 HOH HOH A . B 2 HOH 38 184 38 HOH HOH A . B 2 HOH 39 185 39 HOH HOH A . B 2 HOH 40 186 40 HOH HOH A . B 2 HOH 41 187 41 HOH HOH A . B 2 HOH 42 188 42 HOH HOH A . B 2 HOH 43 189 43 HOH HOH A . B 2 HOH 44 190 44 HOH HOH A . B 2 HOH 45 191 45 HOH HOH A . B 2 HOH 46 192 46 HOH HOH A . B 2 HOH 47 193 47 HOH HOH A . B 2 HOH 48 194 48 HOH HOH A . B 2 HOH 49 195 49 HOH HOH A . B 2 HOH 50 196 50 HOH HOH A . B 2 HOH 51 197 51 HOH HOH A . B 2 HOH 52 198 52 HOH HOH A . B 2 HOH 53 199 53 HOH HOH A . B 2 HOH 54 200 54 HOH HOH A . B 2 HOH 55 201 55 HOH HOH A . B 2 HOH 56 202 56 HOH HOH A . B 2 HOH 57 203 57 HOH HOH A . B 2 HOH 58 204 58 HOH HOH A . B 2 HOH 59 205 59 HOH HOH A . B 2 HOH 60 206 60 HOH HOH A . B 2 HOH 61 207 61 HOH HOH A . B 2 HOH 62 208 62 HOH HOH A . B 2 HOH 63 209 63 HOH HOH A . B 2 HOH 64 210 64 HOH HOH A . B 2 HOH 65 211 65 HOH HOH A . B 2 HOH 66 212 66 HOH HOH A . B 2 HOH 67 213 67 HOH HOH A . B 2 HOH 68 214 68 HOH HOH A . B 2 HOH 69 215 69 HOH HOH A . B 2 HOH 70 216 70 HOH HOH A . B 2 HOH 71 217 71 HOH HOH A . B 2 HOH 72 218 72 HOH HOH A . B 2 HOH 73 219 73 HOH HOH A . B 2 HOH 74 220 74 HOH HOH A . B 2 HOH 75 221 75 HOH HOH A . B 2 HOH 76 222 76 HOH HOH A . B 2 HOH 77 223 77 HOH HOH A . B 2 HOH 78 224 78 HOH HOH A . B 2 HOH 79 225 79 HOH HOH A . B 2 HOH 80 226 80 HOH HOH A . B 2 HOH 81 227 81 HOH HOH A . B 2 HOH 82 228 82 HOH HOH A . B 2 HOH 83 229 83 HOH HOH A . B 2 HOH 84 230 84 HOH HOH A . B 2 HOH 85 231 85 HOH HOH A . B 2 HOH 86 232 86 HOH HOH A . B 2 HOH 87 233 87 HOH HOH A . B 2 HOH 88 234 88 HOH HOH A . B 2 HOH 89 235 89 HOH HOH A . B 2 HOH 90 236 90 HOH HOH A . B 2 HOH 91 237 91 HOH HOH A . B 2 HOH 92 238 92 HOH HOH A . B 2 HOH 93 239 93 HOH HOH A . B 2 HOH 94 240 94 HOH HOH A . B 2 HOH 95 241 95 HOH HOH A . B 2 HOH 96 242 96 HOH HOH A . B 2 HOH 97 243 97 HOH HOH A . B 2 HOH 98 244 98 HOH HOH A . B 2 HOH 99 245 99 HOH HOH A . B 2 HOH 100 246 100 HOH HOH A . B 2 HOH 101 247 101 HOH HOH A . B 2 HOH 102 248 102 HOH HOH A . B 2 HOH 103 249 103 HOH HOH A . B 2 HOH 104 250 104 HOH HOH A . B 2 HOH 105 251 105 HOH HOH A . B 2 HOH 106 252 106 HOH HOH A . B 2 HOH 107 253 107 HOH HOH A . B 2 HOH 108 254 108 HOH HOH A . B 2 HOH 109 255 109 HOH HOH A . B 2 HOH 110 256 110 HOH HOH A . B 2 HOH 111 257 111 HOH HOH A . B 2 HOH 112 258 112 HOH HOH A . B 2 HOH 113 259 113 HOH HOH A . B 2 HOH 114 260 114 HOH HOH A . B 2 HOH 115 261 115 HOH HOH A . B 2 HOH 116 262 116 HOH HOH A . B 2 HOH 117 263 117 HOH HOH A . B 2 HOH 118 264 118 HOH HOH A . B 2 HOH 119 265 119 HOH HOH A . B 2 HOH 120 266 120 HOH HOH A . B 2 HOH 121 267 121 HOH HOH A . B 2 HOH 122 268 122 HOH HOH A . B 2 HOH 123 269 123 HOH HOH A . B 2 HOH 124 270 124 HOH HOH A . B 2 HOH 125 271 125 HOH HOH A . B 2 HOH 126 272 126 HOH HOH A . B 2 HOH 127 273 127 HOH HOH A . B 2 HOH 128 274 128 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 28 A MSE 25 ? MET SELENOMETHIONINE 3 A MSE 89 A MSE 86 ? MET SELENOMETHIONINE 4 A MSE 116 A MSE 113 ? MET SELENOMETHIONINE 5 A MSE 126 A MSE 123 ? MET SELENOMETHIONINE 6 A MSE 134 A MSE 131 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 28970 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 5 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 6 'crystal symmetry operation' 6_555 z,-x,-y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 7 'crystal symmetry operation' 7_555 -z,-x,y 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 8 'crystal symmetry operation' 8_555 -z,x,-y 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 9 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 10 'crystal symmetry operation' 10_555 -y,z,-x 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 11 'crystal symmetry operation' 11_555 y,-z,-x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 12 'crystal symmetry operation' 12_555 -y,-z,x 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 0.0000 _pdbx_refine_tls.origin_y 0.0000 _pdbx_refine_tls.origin_z 0.0000 _pdbx_refine_tls.T[1][1] 0.0000 _pdbx_refine_tls.T[2][2] 0.0000 _pdbx_refine_tls.T[3][3] 0.0000 _pdbx_refine_tls.T[1][2] 0.0000 _pdbx_refine_tls.T[1][3] 0.0000 _pdbx_refine_tls.T[2][3] 0.0000 _pdbx_refine_tls.L[1][1] 0.0000 _pdbx_refine_tls.L[2][2] 0.0000 _pdbx_refine_tls.L[3][3] 0.0000 _pdbx_refine_tls.L[1][2] 0.0000 _pdbx_refine_tls.L[1][3] 0.0000 _pdbx_refine_tls.L[2][3] 0.0000 _pdbx_refine_tls.S[1][1] 0.0000 _pdbx_refine_tls.S[1][2] 0.0000 _pdbx_refine_tls.S[1][3] 0.0000 _pdbx_refine_tls.S[2][1] 0.0000 _pdbx_refine_tls.S[2][2] 0.0000 _pdbx_refine_tls.S[2][3] 0.0000 _pdbx_refine_tls.S[3][1] 0.0000 _pdbx_refine_tls.S[3][2] 0.0000 _pdbx_refine_tls.S[3][3] 0.0000 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 4 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 139 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 142 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-3000 'data reduction' . ? 2 HKL-3000 'data scaling' . ? 3 HKL-3000 phasing . ? 4 SHELXCD phasing . ? 5 SHELXE 'model building' . ? 6 MLPHARE phasing . ? 7 RESOLVE phasing . ? 8 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 136 ? ? CZ A ARG 136 ? ? NH1 A ARG 136 ? ? 116.84 120.30 -3.46 0.50 N 2 1 NE A ARG 136 ? ? CZ A ARG 136 ? ? NH2 A ARG 136 ? ? 123.93 120.30 3.63 0.50 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A ASP 140 ? A ASP 143 5 1 Y 1 A LYS 141 ? A LYS 144 6 1 Y 1 A ALA 142 ? A ALA 145 7 1 Y 1 A MSE 143 ? A MSE 146 8 1 Y 1 A VAL 144 ? A VAL 147 9 1 Y 1 A LEU 145 ? A LEU 148 10 1 Y 1 A ASN 146 ? A ASN 149 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #