HEADER OXIDOREDUCTASE 27-JUL-07 2QR6 TITLE CRYSTAL STRUCTURE OF IMP DEHYDROGENASE/GMP REDUCTASE-LIKE PROTEIN TITLE 2 (NP_599840.1) FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032 KITASATO AT TITLE 3 1.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMP DEHYDROGENASE/GMP REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IMP DEHYDROGENASE / GMP REDUCTASE C TERMINUS, IMP COMPND 5 DEHYDROGENASE / GMP REDUCTASE DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM ATCC 13032; SOURCE 3 ORGANISM_TAXID: 196627; SOURCE 4 STRAIN: DSM 20300, JCM 1318, LMG 3730, NCIMB 10025; SOURCE 5 GENE: NP_599840.1, GUAB3, CGL0604, CG0700; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_599840.1, IMP DEHYDROGENASE/GMP REDUCTASE-LIKE PROTEIN, GMP KEYWDS 2 REDUCTASE DOMAIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2QR6 1 SEQADV REVDAT 5 24-JUL-19 2QR6 1 REMARK LINK REVDAT 4 25-OCT-17 2QR6 1 REMARK REVDAT 3 13-JUL-11 2QR6 1 VERSN REVDAT 2 24-FEB-09 2QR6 1 VERSN REVDAT 1 14-AUG-07 2QR6 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF IMP DEHYDROGENASE/GMP REDUCTASE-LIKE JRNL TITL 2 PROTEIN (NP_599840.1) FROM CORYNEBACTERIUM GLUTAMICUM ATCC JRNL TITL 3 13032 KITASATO AT 1.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 69848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3530 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4851 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 260 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2727 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2937 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1930 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4031 ; 1.751 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4735 ; 1.459 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 417 ; 4.472 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;32.364 ;23.443 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;10.972 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.583 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3395 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 599 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 560 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2003 ; 0.163 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1450 ; 0.164 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1544 ; 0.077 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 231 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.114 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2113 ; 2.246 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 788 ; 0.521 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3072 ; 3.000 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1115 ; 4.981 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 934 ; 6.551 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 177 REMARK 3 RESIDUE RANGE : A 183 A 321 REMARK 3 RESIDUE RANGE : A 326 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3830 16.9890 9.2290 REMARK 3 T TENSOR REMARK 3 T11: -0.0831 T22: -0.0984 REMARK 3 T33: -0.1534 T12: -0.0240 REMARK 3 T13: -0.0113 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.6857 L22: 0.8748 REMARK 3 L33: 0.8391 L12: 0.1241 REMARK 3 L13: -0.2263 L23: -0.3397 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: 0.0355 S13: -0.0285 REMARK 3 S21: -0.1538 S22: -0.0036 S23: -0.0343 REMARK 3 S31: 0.0409 S32: 0.0940 S33: 0.0214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. RESIDUES 178-182 AND 322-325 ARE DISORDERED AND REMARK 3 NOT INCLUDED IN THE MODEL. REMARK 3 5. THERE ARE SOME UNMODELED DENSITIES NEAR RESIDUES 20, 26, 137, REMARK 3 145, REMARK 3 159, 184, 208, 266. REMARK 4 REMARK 4 2QR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000043951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97925, 0.97904 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69856 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.656 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.60500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M MG(OAC)2, 30.0% MPD, REMARK 280 0.1M CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 63.56500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.56500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.42500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 63.56500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.56500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.42500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 63.56500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 63.56500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 27.42500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 63.56500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 63.56500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 27.42500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 AUTHORS STATE THAT THE CRYSTAL PACKING ANALYSIS WITH REMARK 300 EBI/PISA SUPPORTS THE ASSIGNMENT OF A TETRAMER AS THE REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17020 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 A CYSTINE REQUIRED FOR INOSITOL-5-MONOPHOSPHATE DEHYDROGENASE REMARK 400 ACTIVITY IS ABSENT AT A PUTATIVE ACTIVE SITE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 GLY A 178 REMARK 465 GLY A 179 REMARK 465 GLU A 180 REMARK 465 ALA A 181 REMARK 465 LEU A 182 REMARK 465 ASP A 322 REMARK 465 LEU A 323 REMARK 465 ASP A 324 REMARK 465 GLU A 325 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 GLU A 12 CD OE1 OE2 REMARK 470 ARG A 29 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 34 CD CE NZ REMARK 470 LYS A 70 CE NZ REMARK 470 GLU A 102 CD OE1 OE2 REMARK 470 ASP A 104 CG OD1 OD2 REMARK 470 GLU A 114 CD OE1 OE2 REMARK 470 GLU A 123 CD OE1 OE2 REMARK 470 ARG A 149 NE CZ NH1 NH2 REMARK 470 LYS A 157 CD CE NZ REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 ASN A 176 CG OD1 ND2 REMARK 470 ASN A 183 CG OD1 ND2 REMARK 470 LYS A 185 NZ REMARK 470 GLU A 186 CD OE1 OE2 REMARK 470 GLU A 268 OE1 OE2 REMARK 470 LYS A 299 CE NZ REMARK 470 LYS A 357 CD CE NZ REMARK 470 LYS A 368 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 128 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 VAL A 373 CB - CA - C ANGL. DEV. = 11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 -128.52 54.79 REMARK 500 ASP A 104 -164.05 61.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375605 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS PARTIALLY REMOVED WITH REMARK 999 TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. THE CRYSTAL CONTAINED A MIXTURE OF REMARK 999 BOTH CLEAVED AND UNCLEAVED FORMS. DBREF 2QR6 A 1 374 UNP Q8NSR4 Q8NSR4_CORGL 1 374 SEQADV 2QR6 MSE A -18 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 GLY A -17 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 SER A -16 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 ASP A -15 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 LYS A -14 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 ILE A -13 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 HIS A -12 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 HIS A -11 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 HIS A -10 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 HIS A -9 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 HIS A -8 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 HIS A -7 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 GLU A -6 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 ASN A -5 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 LEU A -4 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 TYR A -3 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 PHE A -2 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 GLN A -1 UNP Q8NSR4 EXPRESSION TAG SEQADV 2QR6 GLY A 0 UNP Q8NSR4 EXPRESSION TAG SEQRES 1 A 393 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 393 ASN LEU TYR PHE GLN GLY MSE ARG ASP HIS VAL GLU ILE SEQRES 3 A 393 GLY ILE GLY ARG GLU ALA ARG ARG THR TYR SER LEU ASP SEQRES 4 A 393 ASP ILE SER VAL VAL SER SER ARG ARG THR ARG SER SER SEQRES 5 A 393 LYS ASP VAL ASP THR THR TRP HIS ILE ASP ALA TYR LYS SEQRES 6 A 393 PHE ASP LEU PRO PHE MSE ASN HIS PRO SER ASP ALA LEU SEQRES 7 A 393 ALA SER PRO GLU PHE VAL ILE GLU MSE GLY LYS GLN GLY SEQRES 8 A 393 GLY LEU GLY VAL ILE ASN ALA GLU GLY LEU TRP GLY ARG SEQRES 9 A 393 HIS ALA ASP LEU ASP GLU ALA ILE ALA LYS VAL ILE ALA SEQRES 10 A 393 ALA TYR GLU GLU GLY ASP GLN ALA ALA ALA THR ARG THR SEQRES 11 A 393 LEU GLN GLU LEU HIS ALA ALA PRO LEU ASP THR GLU LEU SEQRES 12 A 393 LEU SER GLU ARG ILE ALA GLN VAL ARG ASP SER GLY GLU SEQRES 13 A 393 ILE VAL ALA VAL ARG VAL SER PRO GLN ASN VAL ARG GLU SEQRES 14 A 393 ILE ALA PRO ILE VAL ILE LYS ALA GLY ALA ASP LEU LEU SEQRES 15 A 393 VAL ILE GLN GLY THR LEU ILE SER ALA GLU HIS VAL ASN SEQRES 16 A 393 THR GLY GLY GLU ALA LEU ASN LEU LYS GLU PHE ILE GLY SEQRES 17 A 393 SER LEU ASP VAL PRO VAL ILE ALA GLY GLY VAL ASN ASP SEQRES 18 A 393 TYR THR THR ALA LEU HIS MSE MSE ARG THR GLY ALA VAL SEQRES 19 A 393 GLY ILE ILE VAL GLY GLY GLY GLU ASN THR ASN SER LEU SEQRES 20 A 393 ALA LEU GLY MSE GLU VAL SER MSE ALA THR ALA ILE ALA SEQRES 21 A 393 ASP VAL ALA ALA ALA ARG ARG ASP TYR LEU ASP GLU THR SEQRES 22 A 393 GLY GLY ARG TYR VAL HIS ILE ILE ALA ASP GLY SER ILE SEQRES 23 A 393 GLU ASN SER GLY ASP VAL VAL LYS ALA ILE ALA CYS GLY SEQRES 24 A 393 ALA ASP ALA VAL VAL LEU GLY SER PRO LEU ALA ARG ALA SEQRES 25 A 393 GLU GLU ALA ALA GLY LYS GLY TYR PHE TRP PRO ALA VAL SEQRES 26 A 393 ALA ALA HIS PRO ARG PHE PRO ARG GLY VAL VAL THR GLU SEQRES 27 A 393 SER VAL ASP LEU ASP GLU ALA ALA PRO SER LEU GLU GLN SEQRES 28 A 393 ILE LEU HIS GLY PRO SER THR MSE PRO TRP GLY VAL GLU SEQRES 29 A 393 ASN PHE GLU GLY GLY LEU LYS ARG ALA LEU ALA LYS CYS SEQRES 30 A 393 GLY TYR THR ASP LEU LYS SER PHE GLN LYS VAL SER LEU SEQRES 31 A 393 HIS VAL ASN MODRES 2QR6 MSE A 1 MET SELENOMETHIONINE MODRES 2QR6 MSE A 52 MET SELENOMETHIONINE MODRES 2QR6 MSE A 68 MET SELENOMETHIONINE MODRES 2QR6 MSE A 209 MET SELENOMETHIONINE MODRES 2QR6 MSE A 210 MET SELENOMETHIONINE MODRES 2QR6 MSE A 232 MET SELENOMETHIONINE MODRES 2QR6 MSE A 236 MET SELENOMETHIONINE MODRES 2QR6 MSE A 340 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 52 13 HET MSE A 68 8 HET MSE A 209 13 HET MSE A 210 8 HET MSE A 232 8 HET MSE A 236 13 HET MSE A 340 13 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 HOH *285(H2 O) HELIX 1 1 ASN A -5 ASP A 3 1 9 HELIX 2 2 SER A 18 ASP A 20 5 3 HELIX 3 3 SER A 32 VAL A 36 5 5 HELIX 4 4 SER A 61 GLN A 71 1 11 HELIX 5 5 ASP A 88 ALA A 118 1 31 HELIX 6 6 ASP A 121 SER A 135 1 15 HELIX 7 7 ASN A 147 ALA A 158 1 12 HELIX 8 8 ASN A 183 LEU A 191 1 9 HELIX 9 9 ASP A 202 ARG A 211 1 10 HELIX 10 10 THR A 225 LEU A 230 1 6 HELIX 11 11 SER A 235 GLY A 255 1 21 HELIX 12 12 ASN A 269 GLY A 280 1 12 HELIX 13 13 GLY A 287 ALA A 293 5 7 HELIX 14 14 PRO A 304 HIS A 309 5 6 HELIX 15 15 SER A 329 GLY A 336 1 8 HELIX 16 16 ASN A 346 GLY A 359 1 14 HELIX 17 17 ASP A 362 GLN A 367 1 6 SHEET 1 A 2 HIS A 4 GLY A 8 0 SHEET 2 A 2 ARG A 11 ARG A 14 -1 O ARG A 11 N ILE A 7 SHEET 1 B 2 ILE A 22 VAL A 24 0 SHEET 2 B 2 LEU A 371 VAL A 373 -1 O HIS A 372 N SER A 23 SHEET 1 C 2 TRP A 40 ILE A 42 0 SHEET 2 C 2 TYR A 45 PHE A 47 -1 O PHE A 47 N TRP A 40 SHEET 1 D 8 PHE A 51 ASN A 53 0 SHEET 2 D 8 ALA A 283 LEU A 286 1 O LEU A 286 N MSE A 52 SHEET 3 D 8 HIS A 260 ALA A 263 1 N ALA A 263 O VAL A 285 SHEET 4 D 8 GLY A 216 VAL A 219 1 N ILE A 217 O HIS A 260 SHEET 5 D 8 VAL A 195 GLY A 198 1 N ALA A 197 O GLY A 216 SHEET 6 D 8 LEU A 162 GLN A 166 1 N ILE A 165 O ILE A 196 SHEET 7 D 8 ALA A 140 VAL A 143 1 N VAL A 141 O VAL A 164 SHEET 8 D 8 VAL A 76 ASN A 78 1 N ILE A 77 O ARG A 142 SHEET 1 E 2 TYR A 301 PHE A 302 0 SHEET 2 E 2 THR A 318 GLU A 319 -1 O THR A 318 N PHE A 302 LINK C GLY A 0 N MSE A 1 1555 1555 1.35 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C PHE A 51 N MSE A 52 1555 1555 1.33 LINK C MSE A 52 N ASN A 53 1555 1555 1.32 LINK C GLU A 67 N MSE A 68 1555 1555 1.33 LINK C MSE A 68 N GLY A 69 1555 1555 1.34 LINK C HIS A 208 N MSE A 209 1555 1555 1.32 LINK C MSE A 209 N MSE A 210 1555 1555 1.32 LINK C MSE A 210 N ARG A 211 1555 1555 1.34 LINK C GLY A 231 N MSE A 232 1555 1555 1.33 LINK C MSE A 232 N GLU A 233 1555 1555 1.30 LINK C SER A 235 N MSE A 236 1555 1555 1.33 LINK C MSE A 236 N ALA A 237 1555 1555 1.33 LINK C THR A 339 N MSE A 340 1555 1555 1.32 LINK C MSE A 340 N PRO A 341 1555 1555 1.33 CISPEP 1 GLY A 198 GLY A 199 0 -2.59 CISPEP 2 GLY A 336 PRO A 337 0 -1.42 CRYST1 127.130 127.130 54.850 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007866 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007866 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018232 0.00000