HEADER MEMBRANE PROTEIN 30-JUL-07 2QS3 TITLE CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE DIMER IN COMPLEX TITLE 2 WITH UBP316 AT 1.76 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTAMATE RECEPTOR 5, GLUR-5, GLUR5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIK1, GLUR5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B (MODIFIED) KEYWDS MEMBRANE PROTEIN, CELL JUNCTION, GLYCOPROTEIN, ION TRANSPORT, IONIC KEYWDS 2 CHANNEL, PHOSPHORYLATION, POSTSYNAPTIC CELL MEMBRANE, RECEPTOR, RNA KEYWDS 3 EDITING, SYNAPSE, TRANSMEMBRANE, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR G.M.ALUSHIN,D.E.JANE,M.L.MAYER REVDAT 7 30-AUG-23 2QS3 1 REMARK REVDAT 6 20-OCT-21 2QS3 1 REMARK SEQADV REVDAT 5 02-AUG-17 2QS3 1 SOURCE REVDAT 4 22-AUG-12 2QS3 1 JRNL REVDAT 3 13-JUL-11 2QS3 1 VERSN REVDAT 2 24-FEB-09 2QS3 1 VERSN REVDAT 1 05-AUG-08 2QS3 0 JRNL AUTH S.L.DARGAN,V.R.CLARKE,G.M.ALUSHIN,J.L.SHERWOOD,R.NISTICO, JRNL AUTH 2 Z.A.BORTOLOTTO,A.M.OGDEN,D.BLEAKMAN,A.J.DOHERTY,D.LODGE, JRNL AUTH 3 M.L.MAYER,S.M.FITZJOHN,D.E.JANE,G.L.COLLINGRIDGE JRNL TITL ACET IS A HIGHLY POTENT AND SPECIFIC KAINATE RECEPTOR JRNL TITL 2 ANTAGONIST: CHARACTERISATION AND EFFECTS ON HIPPOCAMPAL JRNL TITL 3 MOSSY FIBRE FUNCTION. JRNL REF NEUROPHARMACOLOGY V. 56 121 2009 JRNL REFN ISSN 0028-3908 JRNL PMID 18789344 JRNL DOI 10.1016/J.NEUROPHARM.2008.08.016 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 57079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4156 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 409 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.141 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4456 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6036 ; 1.185 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 557 ; 5.013 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;33.055 ;24.526 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 844 ;13.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;13.307 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 645 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3355 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2149 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3188 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 439 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 107 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 49 ; 0.105 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2740 ; 0.515 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4334 ; 0.872 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1991 ; 1.219 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1702 ; 1.896 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): -13.2577 3.5183 16.0489 REMARK 3 T TENSOR REMARK 3 T11: .0538 T22: .0419 REMARK 3 T33: .0379 T12: -.0292 REMARK 3 T13: -.0229 T23: -.0100 REMARK 3 L TENSOR REMARK 3 L11: .6628 L22: 1.3510 REMARK 3 L33: 1.9794 L12: .4597 REMARK 3 L13: .4578 L23: .8724 REMARK 3 S TENSOR REMARK 3 S11: .1380 S12: -.0531 S13: -.0363 REMARK 3 S21: .1631 S22: .0489 S23: -.0852 REMARK 3 S31: .2200 S32: .0785 S33: -.1868 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7888 -14.1900 13.0470 REMARK 3 T TENSOR REMARK 3 T11: .1805 T22: .2339 REMARK 3 T33: .1725 T12: .5099 REMARK 3 T13: -.4720 T23: -.2867 REMARK 3 L TENSOR REMARK 3 L11: 1.5604 L22: 9.9022 REMARK 3 L33: 5.0982 L12: .9689 REMARK 3 L13: -1.2427 L23: 1.4790 REMARK 3 S TENSOR REMARK 3 S11: -.2910 S12: -.5732 S13: -.9249 REMARK 3 S21: 1.4432 S22: .8967 S23: -1.7356 REMARK 3 S31: 1.4223 S32: 1.3899 S33: -.6057 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1672 5.4182 7.8658 REMARK 3 T TENSOR REMARK 3 T11: -.0214 T22: .0834 REMARK 3 T33: .0983 T12: -.0259 REMARK 3 T13: -.0102 T23: -.1019 REMARK 3 L TENSOR REMARK 3 L11: .3852 L22: 1.3247 REMARK 3 L33: 2.2256 L12: .2631 REMARK 3 L13: .0797 L23: 1.1646 REMARK 3 S TENSOR REMARK 3 S11: .1623 S12: -.0940 S13: .0038 REMARK 3 S21: .0460 S22: .2701 S23: -.4464 REMARK 3 S31: .0034 S32: .5563 S33: -.4324 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): -45.3715 -13.4798 16.0235 REMARK 3 T TENSOR REMARK 3 T11: .0408 T22: .0587 REMARK 3 T33: .0403 T12: -.0278 REMARK 3 T13: .0102 T23: .0253 REMARK 3 L TENSOR REMARK 3 L11: 1.4084 L22: .7051 REMARK 3 L33: 2.0679 L12: .4690 REMARK 3 L13: -.9053 L23: -.4322 REMARK 3 S TENSOR REMARK 3 S11: .0437 S12: .1659 S13: .0897 REMARK 3 S21: -.0559 S22: .1447 S23: .0358 REMARK 3 S31: -.0747 S32: -.2214 S33: -.1884 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 119 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): -63.4008 7.2480 19.4371 REMARK 3 T TENSOR REMARK 3 T11: .2418 T22: .1088 REMARK 3 T33: .1511 T12: .3543 REMARK 3 T13: .2658 T23: .3222 REMARK 3 L TENSOR REMARK 3 L11: 9.5078 L22: 4.2469 REMARK 3 L33: 11.4584 L12: -.1586 REMARK 3 L13: -1.6148 L23: 5.1516 REMARK 3 S TENSOR REMARK 3 S11: .6457 S12: .8250 S13: 1.5547 REMARK 3 S21: -1.2215 S22: .1409 S23: .7090 REMARK 3 S31: -1.9800 S32: -.8437 S33: -.7866 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 182 B 254 REMARK 3 ORIGIN FOR THE GROUP (A): -44.0918 -3.2944 23.8129 REMARK 3 T TENSOR REMARK 3 T11: .0926 T22: -.0282 REMARK 3 T33: .0969 T12: -.0227 REMARK 3 T13: .1036 T23: .0232 REMARK 3 L TENSOR REMARK 3 L11: 1.3569 L22: .5766 REMARK 3 L33: 2.1399 L12: .2985 REMARK 3 L13: -1.1087 L23: -.0367 REMARK 3 S TENSOR REMARK 3 S11: .2555 S12: .0735 S13: .4689 REMARK 3 S21: -.1134 S22: .1741 S23: .0149 REMARK 3 S31: -.5739 S32: -.0298 S33: -.4297 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000043984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI-220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61223 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2F34 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 1K, 100MM TRIS-CL, 2.5MM REMARK 280 UBP316, PH 8.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.30200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.30200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.88300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.85100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.88300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.85100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.30200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.88300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.85100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.30200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.88300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.85100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SYMMETRY OPERATOR TO BUILD THE BIOLOGICAL DIMER FOR REMARK 300 CHAIN A IS X,-Y,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -97.76600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.30200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 501 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 784 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 781 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLY A 255 REMARK 465 CYS A 256 REMARK 465 PRO A 257 REMARK 465 SER A 258 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 GLY B 255 REMARK 465 CYS B 256 REMARK 465 PRO B 257 REMARK 465 SER B 258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 190 O HOH A 802 1.90 REMARK 500 OE2 GLU B 190 O HOH B 631 1.93 REMARK 500 OH7 1PE A 602 O HOH A 766 2.10 REMARK 500 OD1 ASP A 52 O HOH A 758 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 13 111.05 -166.79 REMARK 500 ARG A 164 33.90 -96.93 REMARK 500 GLU B 13 110.79 -168.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UBE A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UBE B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F34 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE DIMER IN COMPLEX REMARK 900 WITH UBP310 AT 1.74 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 2F35 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE DIMER IN COMPLEX REMARK 900 WITH UBP302 AT 1.87 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 2F36 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE DIMER IN COMPLEX REMARK 900 WITH GLUTAMATE AT 2.1 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 1TXF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE DIMER IN COMPLEX REMARK 900 WITH GLUTAMATE AT 2.1 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 2QS1 RELATED DB: PDB REMARK 900 RELATED ID: 2QS2 RELATED DB: PDB REMARK 900 RELATED ID: 2QS4 RELATED DB: PDB DBREF 2QS3 A 3 116 UNP P22756 GRIK1_RAT 446 559 DBREF 2QS3 A 119 258 UNP P22756 GRIK1_RAT 682 821 DBREF 2QS3 B 3 116 UNP P22756 GRIK1_RAT 446 559 DBREF 2QS3 B 119 258 UNP P22756 GRIK1_RAT 682 821 SEQADV 2QS3 GLY A 1 UNP P22756 EXPRESSION TAG SEQADV 2QS3 SER A 2 UNP P22756 EXPRESSION TAG SEQADV 2QS3 GLY A 117 UNP P22756 LINKER SEQADV 2QS3 THR A 118 UNP P22756 LINKER SEQADV 2QS3 SER A 258 UNP P22756 GLU 821 ENGINEERED MUTATION SEQADV 2QS3 GLY B 1 UNP P22756 EXPRESSION TAG SEQADV 2QS3 SER B 2 UNP P22756 EXPRESSION TAG SEQADV 2QS3 GLY B 117 UNP P22756 LINKER SEQADV 2QS3 THR B 118 UNP P22756 LINKER SEQADV 2QS3 SER B 258 UNP P22756 GLU 821 ENGINEERED MUTATION SEQRES 1 A 258 GLY SER ASN ARG THR LEU ILE VAL THR THR ILE LEU GLU SEQRES 2 A 258 GLU PRO TYR VAL MET TYR ARG LYS SER ASP LYS PRO LEU SEQRES 3 A 258 TYR GLY ASN ASP ARG PHE GLU GLY TYR CYS LEU ASP LEU SEQRES 4 A 258 LEU LYS GLU LEU SER ASN ILE LEU GLY PHE LEU TYR ASP SEQRES 5 A 258 VAL LYS LEU VAL PRO ASP GLY LYS TYR GLY ALA GLN ASN SEQRES 6 A 258 ASP LYS GLY GLU TRP ASN GLY MET VAL LYS GLU LEU ILE SEQRES 7 A 258 ASP HIS ARG ALA ASP LEU ALA VAL ALA PRO LEU THR ILE SEQRES 8 A 258 THR TYR VAL ARG GLU LYS VAL ILE ASP PHE SER LYS PRO SEQRES 9 A 258 PHE MET THR LEU GLY ILE SER ILE LEU TYR ARG LYS GLY SEQRES 10 A 258 THR PRO ILE ASP SER ALA ASP ASP LEU ALA LYS GLN THR SEQRES 11 A 258 LYS ILE GLU TYR GLY ALA VAL ARG ASP GLY SER THR MET SEQRES 12 A 258 THR PHE PHE LYS LYS SER LYS ILE SER THR TYR GLU LYS SEQRES 13 A 258 MET TRP ALA PHE MET SER SER ARG GLN GLN SER ALA LEU SEQRES 14 A 258 VAL LYS ASN SER ASP GLU GLY ILE GLN ARG VAL LEU THR SEQRES 15 A 258 THR ASP TYR ALA LEU LEU MET GLU SER THR SER ILE GLU SEQRES 16 A 258 TYR VAL THR GLN ARG ASN CYS ASN LEU THR GLN ILE GLY SEQRES 17 A 258 GLY LEU ILE ASP SER LYS GLY TYR GLY VAL GLY THR PRO SEQRES 18 A 258 ILE GLY SER PRO TYR ARG ASP LYS ILE THR ILE ALA ILE SEQRES 19 A 258 LEU GLN LEU GLN GLU GLU GLY LYS LEU HIS MET MET LYS SEQRES 20 A 258 GLU LYS TRP TRP ARG GLY ASN GLY CYS PRO SER SEQRES 1 B 258 GLY SER ASN ARG THR LEU ILE VAL THR THR ILE LEU GLU SEQRES 2 B 258 GLU PRO TYR VAL MET TYR ARG LYS SER ASP LYS PRO LEU SEQRES 3 B 258 TYR GLY ASN ASP ARG PHE GLU GLY TYR CYS LEU ASP LEU SEQRES 4 B 258 LEU LYS GLU LEU SER ASN ILE LEU GLY PHE LEU TYR ASP SEQRES 5 B 258 VAL LYS LEU VAL PRO ASP GLY LYS TYR GLY ALA GLN ASN SEQRES 6 B 258 ASP LYS GLY GLU TRP ASN GLY MET VAL LYS GLU LEU ILE SEQRES 7 B 258 ASP HIS ARG ALA ASP LEU ALA VAL ALA PRO LEU THR ILE SEQRES 8 B 258 THR TYR VAL ARG GLU LYS VAL ILE ASP PHE SER LYS PRO SEQRES 9 B 258 PHE MET THR LEU GLY ILE SER ILE LEU TYR ARG LYS GLY SEQRES 10 B 258 THR PRO ILE ASP SER ALA ASP ASP LEU ALA LYS GLN THR SEQRES 11 B 258 LYS ILE GLU TYR GLY ALA VAL ARG ASP GLY SER THR MET SEQRES 12 B 258 THR PHE PHE LYS LYS SER LYS ILE SER THR TYR GLU LYS SEQRES 13 B 258 MET TRP ALA PHE MET SER SER ARG GLN GLN SER ALA LEU SEQRES 14 B 258 VAL LYS ASN SER ASP GLU GLY ILE GLN ARG VAL LEU THR SEQRES 15 B 258 THR ASP TYR ALA LEU LEU MET GLU SER THR SER ILE GLU SEQRES 16 B 258 TYR VAL THR GLN ARG ASN CYS ASN LEU THR GLN ILE GLY SEQRES 17 B 258 GLY LEU ILE ASP SER LYS GLY TYR GLY VAL GLY THR PRO SEQRES 18 B 258 ILE GLY SER PRO TYR ARG ASP LYS ILE THR ILE ALA ILE SEQRES 19 B 258 LEU GLN LEU GLN GLU GLU GLY LYS LEU HIS MET MET LYS SEQRES 20 B 258 GLU LYS TRP TRP ARG GLY ASN GLY CYS PRO SER HET CL A 501 1 HET 1PE A 602 16 HET UBE A 603 30 HET CL B 502 1 HET 1PE B 601 16 HET UBE B 602 30 HETNAM CL CHLORIDE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM UBE 3-({3-[(2S)-2-AMINO-2-CARBOXYETHYL]-5-METHYL-2,6-DIOXO- HETNAM 2 UBE 3,6-DIHYDROPYRIMIDIN-1(2H)-YL}METHYL)-5- HETNAM 3 UBE PHENYLTHIOPHENE-2-CARBOXYLIC ACID HETSYN 1PE PEG400 FORMUL 3 CL 2(CL 1-) FORMUL 4 1PE 2(C10 H22 O6) FORMUL 5 UBE 2(C20 H19 N3 O6 S) FORMUL 9 HOH *409(H2 O) HELIX 1 1 TYR A 27 ASP A 30 5 4 HELIX 2 2 GLY A 34 GLY A 48 1 15 HELIX 3 3 ASN A 71 ASP A 79 1 9 HELIX 4 4 THR A 92 LYS A 97 1 6 HELIX 5 5 SER A 122 LYS A 128 1 7 HELIX 6 6 GLY A 140 SER A 149 1 10 HELIX 7 7 ILE A 151 ARG A 164 1 14 HELIX 8 8 ARG A 164 LEU A 169 1 6 HELIX 9 9 ASN A 172 THR A 183 1 12 HELIX 10 10 SER A 191 ASN A 201 1 11 HELIX 11 11 TYR A 226 GLU A 240 1 15 HELIX 12 12 GLY A 241 ARG A 252 1 12 HELIX 13 13 TYR B 27 ASP B 30 5 4 HELIX 14 14 GLY B 34 GLY B 48 1 15 HELIX 15 15 ASN B 71 ASP B 79 1 9 HELIX 16 16 THR B 92 LYS B 97 1 6 HELIX 17 17 SER B 122 LYS B 128 1 7 HELIX 18 18 GLY B 140 SER B 149 1 10 HELIX 19 19 ILE B 151 ARG B 164 1 14 HELIX 20 20 ARG B 164 LEU B 169 1 6 HELIX 21 21 ASN B 172 THR B 183 1 12 HELIX 22 22 SER B 191 ASN B 201 1 11 HELIX 23 23 TYR B 226 GLU B 240 1 15 HELIX 24 24 GLY B 241 ARG B 252 1 12 SHEET 1 A 3 LEU A 50 LEU A 55 0 SHEET 2 A 3 THR A 5 THR A 10 1 N VAL A 8 O LYS A 54 SHEET 3 A 3 LEU A 84 ALA A 85 1 O LEU A 84 N THR A 9 SHEET 1 B 2 MET A 18 TYR A 19 0 SHEET 2 B 2 PHE A 32 GLU A 33 -1 O GLU A 33 N MET A 18 SHEET 1 C 2 ILE A 99 PHE A 101 0 SHEET 2 C 2 GLY A 219 PRO A 221 -1 O THR A 220 N ASP A 100 SHEET 1 D 2 MET A 106 LEU A 108 0 SHEET 2 D 2 LYS A 214 TYR A 216 -1 O LYS A 214 N LEU A 108 SHEET 1 E 4 GLU A 133 GLY A 135 0 SHEET 2 E 4 TYR A 185 GLU A 190 1 O LEU A 188 N GLY A 135 SHEET 3 E 4 ILE A 110 ARG A 115 -1 N SER A 111 O MET A 189 SHEET 4 E 4 LEU A 204 ILE A 207 -1 O THR A 205 N TYR A 114 SHEET 1 F 3 LEU B 50 LEU B 55 0 SHEET 2 F 3 THR B 5 THR B 10 1 N VAL B 8 O LYS B 54 SHEET 3 F 3 LEU B 84 ALA B 85 1 O LEU B 84 N THR B 9 SHEET 1 G 2 MET B 18 TYR B 19 0 SHEET 2 G 2 PHE B 32 GLU B 33 -1 O GLU B 33 N MET B 18 SHEET 1 H 2 ILE B 99 PHE B 101 0 SHEET 2 H 2 GLY B 219 PRO B 221 -1 O THR B 220 N ASP B 100 SHEET 1 I 2 MET B 106 LEU B 108 0 SHEET 2 I 2 LYS B 214 TYR B 216 -1 O LYS B 214 N LEU B 108 SHEET 1 J 4 GLU B 133 GLY B 135 0 SHEET 2 J 4 TYR B 185 GLU B 190 1 O LEU B 188 N GLY B 135 SHEET 3 J 4 ILE B 110 ARG B 115 -1 N SER B 111 O MET B 189 SHEET 4 J 4 LEU B 204 ILE B 207 -1 O THR B 205 N TYR B 114 CISPEP 1 GLU A 14 PRO A 15 0 -2.72 CISPEP 2 GLU B 14 PRO B 15 0 -3.21 SITE 1 AC1 3 LYS A 103 ARG A 227 HOH A 614 SITE 1 AC2 3 LYS B 103 ARG B 227 HOH B 616 SITE 1 AC3 6 ARG B 20 LYS B 21 SER B 22 ASP B 23 SITE 2 AC3 6 HOH B 756 HOH B 781 SITE 1 AC4 8 ARG A 20 LYS A 21 SER A 22 ASP A 23 SITE 2 AC4 8 HOH A 629 HOH A 766 HOH A 767 HOH A 788 SITE 1 AC5 18 TYR A 61 PRO A 88 LEU A 89 THR A 90 SITE 2 AC5 18 ARG A 95 GLY A 140 SER A 141 THR A 142 SITE 3 AC5 18 SER A 173 GLU A 190 SER A 193 TYR A 216 SITE 4 AC5 18 HOH A 626 HOH A 667 HOH A 721 HOH A 723 SITE 5 AC5 18 HOH A 733 HOH A 779 SITE 1 AC6 17 TYR B 61 PRO B 88 LEU B 89 THR B 90 SITE 2 AC6 17 ARG B 95 GLY B 140 SER B 141 THR B 142 SITE 3 AC6 17 GLU B 190 SER B 193 TYR B 216 HOH B 627 SITE 4 AC6 17 HOH B 672 HOH B 737 HOH B 753 HOH B 768 SITE 5 AC6 17 HOH B 804 CRYST1 97.766 97.702 128.604 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010229 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007776 0.00000