HEADER TRANSFERASE 31-JUL-07 2QSZ TITLE HUMAN NICOTINAMIDE RIBOSIDE KINASE 1 IN COMPLEX WITH NICOTINAMIDE TITLE 2 MONONUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDE RIBOSIDE KINASE 1; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NRK1, C9ORF95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P28A-LIC KEYWDS NON-PROTEIN KINASE, NAD+, NICOTINAMIDE RIBOSIDE, NRK1, NICOTINAMIDE KEYWDS 2 RIBOSIDE KINASE ACTIVITY, NICOTINIC ACID RIBOSIDE KINASE ACTIVITY, KEYWDS 3 NAD BIOSYNTHESIS, ADP, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, SGC, ALTERNATIVE SPLICING, ATP-BINDING, NUCLEOTIDE- KEYWDS 5 BINDING, PYRIDINE NUCLEOTIDE BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.M.RABEH,W.TEMPEL,L.NEDYALKOVA,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,C.BRENNER,H.PARK,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 6 15-NOV-23 2QSZ 1 REMARK REVDAT 5 30-AUG-23 2QSZ 1 REMARK SEQADV LINK REVDAT 4 25-OCT-17 2QSZ 1 REMARK REVDAT 3 24-FEB-09 2QSZ 1 VERSN REVDAT 2 16-OCT-07 2QSZ 1 JRNL REVDAT 1 14-AUG-07 2QSZ 0 JRNL AUTH W.TEMPEL,W.M.RABEH,K.L.BOGAN,P.BELENKY,M.WOJCIK,H.F.SEIDLE, JRNL AUTH 2 L.NEDYALKOVA,T.YANG,A.A.SAUVE,H.W.PARK,C.BRENNER JRNL TITL NICOTINAMIDE RIBOSIDE KINASE STRUCTURES REVEAL NEW PATHWAYS JRNL TITL 2 TO NAD(+). JRNL REF PLOS BIOL. V. 5 E263 2007 JRNL REFN ISSN 1544-9173 JRNL PMID 17914902 JRNL DOI 10.1371/JOURNAL.PBIO.0050263 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 19721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : REFLECTIONS FROM ISOMORPHOUS REMARK 3 DATA OF NRK1-ADP COMPLEX REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1031 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1237 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1629 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1108 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2220 ; 1.323 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2694 ; 4.119 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 196 ; 5.757 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;30.625 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 284 ;13.255 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.199 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 242 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1776 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 326 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 299 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1006 ; 0.228 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 748 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 673 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 77 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.156 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.117 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 955 ; 2.069 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 379 ; 0.000 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1566 ; 2.840 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 674 ; 2.156 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 649 ; 2.905 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. PRODRG, ARP/WARP, COOT, MOLPROBITY PROGRAMS HAVE ALSO REMARK 3 BEEN USED IN REFINEMENT REMARK 4 REMARK 4 2QSZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.90100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QSY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M SODIUM PHOSPHATE REMARK 280 MONOBASIC, 0.15M D(+)SUCROSE, 0.1M HEPES PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.21700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.21700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.96050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.17100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.96050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.17100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.21700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.96050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.17100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.21700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.96050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.17100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE PROGRAM GENERATED ASSEMBLY REMARK 300 INFORMATION FOR THE STRUCTURE IN THIS ENTRY. REMARK 300 AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS REMARK 300 POLYPEPTIDE IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 GLY A -5 REMARK 465 LEU A -4 REMARK 465 ASP A 85 REMARK 465 GLN A 86 REMARK 465 GLU A 87 REMARK 465 SER A 88 REMARK 465 ALA A 89 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CE NZ REMARK 470 GLU A 46 CD OE1 OE2 REMARK 470 LYS A 49 CD CE NZ REMARK 470 LYS A 65 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 -167.88 -112.65 REMARK 500 ASP A 56 42.82 -103.43 REMARK 500 HIS A 146 -57.43 -137.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NMN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QSY RELATED DB: PDB REMARK 900 HUMAN NICOTINAMIDE RIBOSIDE KINASE 1 IN COMPLEX WITH ADP REMARK 900 RELATED ID: 2QT0 RELATED DB: PDB REMARK 900 HUMAN NICOTINAMIDE RIBOSIDE KINASE 1 IN COMPLEX WITH NICOTINAMIDE REMARK 900 RIBOSIDE AND AN ATP ANALOGUE REMARK 900 RELATED ID: 2QT1 RELATED DB: PDB REMARK 900 HUMAN NICOTINAMIDE RIBOSIDE KINASE 1 IN COMPLEX WITH NICOTINAMIDE REMARK 900 RIBOSIDE DBREF 2QSZ A 2 189 UNP Q9NWW6 NRK1_HUMAN 2 189 SEQADV 2QSZ MSE A -17 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ GLY A -16 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ SER A -15 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ SER A -14 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ HIS A -13 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ HIS A -12 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ HIS A -11 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ HIS A -10 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ HIS A -9 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ HIS A -8 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ SER A -7 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ SER A -6 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ GLY A -5 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ LEU A -4 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ VAL A -3 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ PRO A -2 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ ARG A -1 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ GLY A 0 UNP Q9NWW6 EXPRESSION TAG SEQADV 2QSZ SER A 1 UNP Q9NWW6 EXPRESSION TAG SEQRES 1 A 207 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 207 LEU VAL PRO ARG GLY SER LYS THR PHE ILE ILE GLY ILE SEQRES 3 A 207 SER GLY VAL THR ASN SER GLY LYS THR THR LEU ALA LYS SEQRES 4 A 207 ASN LEU GLN LYS HIS LEU PRO ASN CYS SER VAL ILE SER SEQRES 5 A 207 GLN ASP ASP PHE PHE LYS PRO GLU SER GLU ILE GLU THR SEQRES 6 A 207 ASP LYS ASN GLY PHE LEU GLN TYR ASP VAL LEU GLU ALA SEQRES 7 A 207 LEU ASN MSE GLU LYS MSE MSE SER ALA ILE SER CYS TRP SEQRES 8 A 207 MSE GLU SER ALA ARG HIS SER VAL VAL SER THR ASP GLN SEQRES 9 A 207 GLU SER ALA GLU GLU ILE PRO ILE LEU ILE ILE GLU GLY SEQRES 10 A 207 PHE LEU LEU PHE ASN TYR LYS PRO LEU ASP THR ILE TRP SEQRES 11 A 207 ASN ARG SER TYR PHE LEU THR ILE PRO TYR GLU GLU CYS SEQRES 12 A 207 LYS ARG ARG ARG SER THR ARG VAL TYR GLN PRO PRO ASP SEQRES 13 A 207 SER PRO GLY TYR PHE ASP GLY HIS VAL TRP PRO MSE TYR SEQRES 14 A 207 LEU LYS TYR ARG GLN GLU MSE GLN ASP ILE THR TRP GLU SEQRES 15 A 207 VAL VAL TYR LEU ASP GLY THR LYS SER GLU GLU ASP LEU SEQRES 16 A 207 PHE LEU GLN VAL TYR GLU ASP LEU ILE GLN GLU LEU MODRES 2QSZ MSE A 63 MET SELENOMETHIONINE MODRES 2QSZ MSE A 66 MET SELENOMETHIONINE MODRES 2QSZ MSE A 67 MET SELENOMETHIONINE MODRES 2QSZ MSE A 74 MET SELENOMETHIONINE MODRES 2QSZ MSE A 150 MET SELENOMETHIONINE MODRES 2QSZ MSE A 158 MET SELENOMETHIONINE HET MSE A 63 8 HET MSE A 66 8 HET MSE A 67 8 HET MSE A 74 8 HET MSE A 150 8 HET MSE A 158 8 HET PO4 A 203 5 HET CL A 204 1 HET NMN A 201 22 HET UNX A1001 1 HET UNX A1002 1 HET UNX A1003 1 HET UNX A1004 1 HET UNX A1005 1 HET UNX A1006 1 HET UNX A1007 1 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM NMN BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE HETNAM UNX UNKNOWN ATOM OR ION HETSYN NMN NICOTINAMIDE MONONUCLEOTIDE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 PO4 O4 P 3- FORMUL 3 CL CL 1- FORMUL 4 NMN C11 H16 N2 O8 P 1+ FORMUL 5 UNX 7(X) FORMUL 12 HOH *103(H2 O) HELIX 1 1 GLY A 15 LYS A 25 1 11 HELIX 2 2 ASP A 36 PHE A 39 5 4 HELIX 3 3 PRO A 41 ILE A 45 5 5 HELIX 4 4 VAL A 57 LEU A 61 5 5 HELIX 5 5 ASN A 62 ARG A 78 1 17 HELIX 6 6 TYR A 105 ASP A 109 5 5 HELIX 7 7 PRO A 121 THR A 131 1 11 HELIX 8 8 GLY A 141 HIS A 146 1 6 HELIX 9 9 HIS A 146 MSE A 158 1 13 HELIX 10 10 GLN A 159 ILE A 161 5 3 HELIX 11 11 SER A 173 LEU A 189 1 17 SHEET 1 A 5 CYS A 30 SER A 34 0 SHEET 2 A 5 ILE A 94 GLU A 98 1 O ILE A 96 N ILE A 33 SHEET 3 A 5 PHE A 4 GLY A 10 1 N ILE A 6 O ILE A 97 SHEET 4 A 5 ARG A 114 THR A 119 1 O TYR A 116 N SER A 9 SHEET 5 A 5 VAL A 166 ASP A 169 1 O LEU A 168 N PHE A 117 LINK C ASN A 62 N MSE A 63 1555 1555 1.32 LINK C MSE A 63 N GLU A 64 1555 1555 1.33 LINK C LYS A 65 N MSE A 66 1555 1555 1.34 LINK C MSE A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N SER A 68 1555 1555 1.33 LINK C TRP A 73 N MSE A 74 1555 1555 1.32 LINK C MSE A 74 N GLU A 75 1555 1555 1.33 LINK C PRO A 149 N MSE A 150 1555 1555 1.33 LINK C MSE A 150 N TYR A 151 1555 1555 1.33 LINK C GLU A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N GLN A 159 1555 1555 1.33 CISPEP 1 GLN A 135 PRO A 136 0 -4.17 SITE 1 AC1 10 ASN A 13 SER A 14 GLY A 15 LYS A 16 SITE 2 AC1 10 THR A 17 ARG A 132 NMN A 201 HOH A 394 SITE 3 AC1 10 UNX A1001 UNX A1006 SITE 1 AC2 3 LEU A 61 MSE A 63 GLU A 64 SITE 1 AC3 15 THR A 12 ASN A 13 LYS A 16 ASP A 36 SITE 2 AC3 15 PHE A 39 TYR A 55 ASP A 56 ARG A 129 SITE 3 AC3 15 ARG A 132 TYR A 134 GLN A 135 PO4 A 203 SITE 4 AC3 15 HOH A 331 HOH A 365 UNX A1001 SITE 1 AC4 6 THR A 17 NMN A 201 PO4 A 203 HOH A 346 SITE 2 AC4 6 HOH A 347 HOH A 348 SITE 1 AC5 2 SER A 71 ASP A 176 SITE 1 AC6 2 VAL A 81 HOH A 376 SITE 1 AC7 2 HOH A 306 HOH A 322 SITE 1 AC8 3 GLY A 0 ALA A 77 ARG A 78 SITE 1 AC9 4 GLY A 15 THR A 17 THR A 18 PO4 A 203 SITE 1 BC1 2 TYR A 122 GLU A 123 CRYST1 55.921 142.342 62.434 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017880 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007030 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016020 0.00000