HEADER OXIDOREDUCTASE 01-AUG-07 2QT8 TITLE COPROPORPHYRINOGEN III OXIDASE FROM LEISHMANIA MAJOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPROPORPHYRINOGEN III OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COPROPORPHYRINOGENASE, COPROGEN OXIDASE; COMPND 5 EC: 1.3.3.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 STRAIN: MHOM/IL/81/FRIEDLIN; SOURCE 5 GENE: LMJF06.1270, LMAJ006828; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS HEME METABOLISM, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS OF KEYWDS 2 PATHOGENIC PROTOZOA CONSORTIUM, SGPP, HEME BIOSYNTHESIS, KEYWDS 3 OXIDOREDUCTASE, PORPHYRIN BIOSYNTHESIS, PSI-2, PROTEIN STRUCTURE KEYWDS 4 INITIATIVE EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MERRITT,STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM AUTHOR 2 (SGPP) REVDAT 7 16-OCT-24 2QT8 1 REMARK REVDAT 6 15-NOV-23 2QT8 1 REMARK REVDAT 5 30-AUG-23 2QT8 1 SEQADV LINK REVDAT 4 25-OCT-17 2QT8 1 REMARK REVDAT 3 13-JUL-11 2QT8 1 VERSN REVDAT 2 24-FEB-09 2QT8 1 VERSN REVDAT 1 04-SEP-07 2QT8 0 JRNL AUTH E.A.MERRITT,I.LE TRONG JRNL TITL COPROPORPHYRINOGEN III OXIDASE FROM LEISHMANIA MAJOR. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 58641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2958 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4875 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 532 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : -0.27000 REMARK 3 B13 (A**2) : 0.52000 REMARK 3 B23 (A**2) : 0.12000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.123 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5159 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3623 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6981 ; 1.027 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8719 ; 1.194 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 606 ; 5.332 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 281 ;31.256 ;23.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 844 ;12.045 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;12.353 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 694 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5824 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1190 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1055 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3657 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2500 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2644 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 376 ; 0.104 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 71 ; 0.225 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.106 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3239 ; 0.458 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1241 ; 0.078 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4887 ; 0.650 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2386 ; 0.960 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2094 ; 1.441 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0354 32.7926 65.2361 REMARK 3 T TENSOR REMARK 3 T11: 0.0748 T22: 0.0815 REMARK 3 T33: -0.0095 T12: -0.0182 REMARK 3 T13: -0.0071 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 1.6375 L22: 9.6554 REMARK 3 L33: 3.0097 L12: 1.3053 REMARK 3 L13: 0.9321 L23: 3.8188 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.1750 S13: -0.0313 REMARK 3 S21: 0.2726 S22: -0.0251 S23: -0.1689 REMARK 3 S31: 0.0412 S32: 0.0686 S33: -0.0219 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 45.8981 28.0251 56.5363 REMARK 3 T TENSOR REMARK 3 T11: -0.0144 T22: 0.0025 REMARK 3 T33: 0.0133 T12: 0.0106 REMARK 3 T13: -0.0413 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 8.0979 L22: 10.0278 REMARK 3 L33: 2.3471 L12: 6.4011 REMARK 3 L13: 2.7929 L23: 4.5552 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: -0.2780 S13: -0.0153 REMARK 3 S21: 0.0042 S22: 0.0923 S23: -0.3921 REMARK 3 S31: -0.0149 S32: 0.1176 S33: -0.1308 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 43.1571 47.0414 52.6964 REMARK 3 T TENSOR REMARK 3 T11: 0.0346 T22: -0.0244 REMARK 3 T33: 0.0891 T12: -0.0014 REMARK 3 T13: 0.0221 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.9167 L22: 4.9468 REMARK 3 L33: 0.9213 L12: 2.1063 REMARK 3 L13: 0.0928 L23: 0.5263 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: 0.2239 S13: 0.2271 REMARK 3 S21: -0.3096 S22: 0.0959 S23: 0.2075 REMARK 3 S31: -0.3663 S32: 0.0355 S33: -0.1172 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7351 38.7177 55.0198 REMARK 3 T TENSOR REMARK 3 T11: 0.0364 T22: 0.0323 REMARK 3 T33: 0.0442 T12: 0.0010 REMARK 3 T13: 0.0157 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.6719 L22: 0.7842 REMARK 3 L33: 0.8791 L12: 0.0352 REMARK 3 L13: 0.0888 L23: 0.1980 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: -0.0485 S13: 0.0927 REMARK 3 S21: 0.0998 S22: -0.0477 S23: 0.0263 REMARK 3 S31: -0.0987 S32: -0.0738 S33: 0.0073 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 218 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): 34.5183 27.9095 43.7030 REMARK 3 T TENSOR REMARK 3 T11: 0.0406 T22: 0.0501 REMARK 3 T33: 0.0353 T12: 0.0050 REMARK 3 T13: 0.0015 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.4511 L22: 1.5164 REMARK 3 L33: 1.2932 L12: 0.5697 REMARK 3 L13: -0.4319 L23: -0.3597 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: -0.0358 S13: 0.0486 REMARK 3 S21: 0.0986 S22: -0.0374 S23: 0.0180 REMARK 3 S31: -0.0724 S32: 0.0501 S33: -0.0484 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 272 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4471 26.2871 37.1306 REMARK 3 T TENSOR REMARK 3 T11: -0.0036 T22: 0.0521 REMARK 3 T33: 0.0352 T12: 0.0111 REMARK 3 T13: -0.0261 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 2.7033 L22: 0.9347 REMARK 3 L33: 1.7853 L12: 0.4249 REMARK 3 L13: -0.8949 L23: 0.4733 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: 0.0085 S13: -0.0274 REMARK 3 S21: -0.0746 S22: -0.0656 S23: 0.1643 REMARK 3 S31: -0.0690 S32: -0.1951 S33: -0.0240 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 39 REMARK 3 ORIGIN FOR THE GROUP (A): 37.8809 34.4043 8.9964 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.0723 REMARK 3 T33: 0.0125 T12: 0.0049 REMARK 3 T13: -0.0285 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 1.5640 L22: 2.3202 REMARK 3 L33: 1.9001 L12: 0.1089 REMARK 3 L13: 0.2859 L23: -1.7242 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: 0.1611 S13: 0.0696 REMARK 3 S21: -0.2792 S22: 0.0966 S23: 0.1808 REMARK 3 S31: 0.0585 S32: -0.0511 S33: -0.0806 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 40 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): 34.6392 32.0575 16.7486 REMARK 3 T TENSOR REMARK 3 T11: 0.0230 T22: 0.0225 REMARK 3 T33: 0.0469 T12: 0.0004 REMARK 3 T13: -0.0286 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.0860 L22: 7.1618 REMARK 3 L33: 1.7589 L12: -2.8616 REMARK 3 L13: 1.1919 L23: -2.8972 REMARK 3 S TENSOR REMARK 3 S11: 0.0485 S12: 0.0821 S13: -0.0598 REMARK 3 S21: 0.0912 S22: -0.0426 S23: 0.2774 REMARK 3 S31: -0.0105 S32: -0.0232 S33: -0.0059 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 82 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0169 55.5917 24.5925 REMARK 3 T TENSOR REMARK 3 T11: 0.2259 T22: 0.2229 REMARK 3 T33: 0.2270 T12: 0.0021 REMARK 3 T13: 0.0018 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 15.4336 L22: 6.9224 REMARK 3 L33: 34.2316 L12: 1.0161 REMARK 3 L13: -2.2440 L23: -4.8811 REMARK 3 S TENSOR REMARK 3 S11: 0.3185 S12: -0.9800 S13: -1.0004 REMARK 3 S21: 1.7518 S22: 0.1634 S23: -0.7953 REMARK 3 S31: -1.1835 S32: 3.7750 S33: -0.4818 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 83 B 217 REMARK 3 ORIGIN FOR THE GROUP (A): 50.6894 39.3675 18.2576 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.0434 REMARK 3 T33: 0.0344 T12: 0.0016 REMARK 3 T13: 0.0118 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.6715 L22: 0.7183 REMARK 3 L33: 0.9814 L12: 0.0876 REMARK 3 L13: -0.0063 L23: -0.3057 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.0355 S13: 0.0775 REMARK 3 S21: -0.0748 S22: -0.0422 S23: -0.0037 REMARK 3 S31: -0.0884 S32: 0.0876 S33: 0.0079 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 218 B 256 REMARK 3 ORIGIN FOR THE GROUP (A): 46.7296 27.0094 29.7593 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0597 REMARK 3 T33: 0.0535 T12: -0.0093 REMARK 3 T13: -0.0041 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.2964 L22: 2.6756 REMARK 3 L33: 1.1863 L12: -0.9400 REMARK 3 L13: -0.5076 L23: 0.3681 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: -0.0219 S13: -0.0035 REMARK 3 S21: -0.0080 S22: -0.0255 S23: -0.0240 REMARK 3 S31: -0.0062 S32: 0.0457 S33: -0.0204 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 257 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 50.5839 28.7981 32.9832 REMARK 3 T TENSOR REMARK 3 T11: 0.0315 T22: 0.0455 REMARK 3 T33: 0.0262 T12: 0.0003 REMARK 3 T13: -0.0108 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.6973 L22: 0.7047 REMARK 3 L33: 1.0177 L12: -0.2141 REMARK 3 L13: 0.2146 L23: -0.1689 REMARK 3 S TENSOR REMARK 3 S11: 0.0873 S12: 0.0211 S13: -0.0054 REMARK 3 S21: -0.0024 S22: -0.0727 S23: -0.0907 REMARK 3 S31: -0.0297 S32: 0.1107 S33: -0.0146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QT8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE CCP4_5.99, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58682 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 46.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.22900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1VJU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 UL PROTEIN 11 MG/ML, 1 UL REMARK 280 CRYSTALLIZATION BUFFER: 35% PEG 5000 MME, 200 MM AMMONIUM REMARK 280 SULFATE, 100 MM MES PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 MSE B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CB CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 40 CB CG CD OE1 OE2 REMARK 470 LYS A 99 CE NZ REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 40 CB CG CD OE1 OE2 REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 192 18.04 -152.96 REMARK 500 TYR A 293 -59.63 -120.68 REMARK 500 GLN A 299 101.06 -163.43 REMARK 500 GLU B 77 -45.16 -166.08 REMARK 500 ASN B 192 23.29 -150.80 REMARK 500 TYR B 293 -59.95 -120.38 REMARK 500 ARG B 298 -43.87 68.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: LMAJ006828AAA RELATED DB: TARGETDB REMARK 900 RELATED ID: 1VJU RELATED DB: PDB REMARK 900 UNCHARACTERIZED PROTEIN FROM LEISHMANIA MAJOR LMAJ006828 DBREF 2QT8 A 1 301 UNP P84155 HEM6_LEIMA 1 301 DBREF 2QT8 B 1 301 UNP P84155 HEM6_LEIMA 1 301 SEQADV 2QT8 MSE A -7 UNP P84155 EXPRESSION TAG SEQADV 2QT8 ALA A -6 UNP P84155 EXPRESSION TAG SEQADV 2QT8 HIS A -5 UNP P84155 EXPRESSION TAG SEQADV 2QT8 HIS A -4 UNP P84155 EXPRESSION TAG SEQADV 2QT8 HIS A -3 UNP P84155 EXPRESSION TAG SEQADV 2QT8 HIS A -2 UNP P84155 EXPRESSION TAG SEQADV 2QT8 HIS A -1 UNP P84155 EXPRESSION TAG SEQADV 2QT8 HIS A 0 UNP P84155 EXPRESSION TAG SEQADV 2QT8 MSE B -7 UNP P84155 EXPRESSION TAG SEQADV 2QT8 ALA B -6 UNP P84155 EXPRESSION TAG SEQADV 2QT8 HIS B -5 UNP P84155 EXPRESSION TAG SEQADV 2QT8 HIS B -4 UNP P84155 EXPRESSION TAG SEQADV 2QT8 HIS B -3 UNP P84155 EXPRESSION TAG SEQADV 2QT8 HIS B -2 UNP P84155 EXPRESSION TAG SEQADV 2QT8 HIS B -1 UNP P84155 EXPRESSION TAG SEQADV 2QT8 HIS B 0 UNP P84155 EXPRESSION TAG SEQRES 1 A 309 MSE ALA HIS HIS HIS HIS HIS HIS MSE SER LEU ALA VAL SEQRES 2 A 309 GLU ALA VAL LYS ASP PHE LEU LEU LYS LEU GLN ASP ASP SEQRES 3 A 309 ILE CYS GLU ALA LEU GLU ALA GLU ASP GLY GLN ALA THR SEQRES 4 A 309 PHE VAL GLU ASP LYS TRP THR ARG GLU GLY GLY GLY GLY SEQRES 5 A 309 GLY ARG THR ARG VAL MSE VAL ASP GLY ALA VAL ILE GLU SEQRES 6 A 309 LYS GLY GLY VAL ASN PHE SER HIS VAL TYR GLY LYS GLY SEQRES 7 A 309 LEU PRO MSE SER SER THR GLU ARG HIS PRO ASP ILE ALA SEQRES 8 A 309 GLY CYS ASN PHE GLU ALA MSE GLY VAL SER LEU VAL ILE SEQRES 9 A 309 HIS PRO LYS ASN PRO HIS VAL PRO THR SER HIS ALA ASN SEQRES 10 A 309 VAL ARG LEU PHE VAL ALA GLU ARG GLU GLY LYS GLU PRO SEQRES 11 A 309 VAL TRP TRP PHE GLY GLY GLY PHE ASP LEU THR PRO TYR SEQRES 12 A 309 TYR ALA VAL GLU GLU ASP CYS ARG ASP PHE HIS GLN VAL SEQRES 13 A 309 ALA GLN ASP LEU CYS LYS PRO PHE GLY ALA ASP VAL TYR SEQRES 14 A 309 ALA ARG PHE LYS GLY TRP CYS ASP GLU TYR PHE PHE ILE SEQRES 15 A 309 PRO TYR ARG ASN GLU ALA ARG GLY ILE GLY GLY LEU PHE SEQRES 16 A 309 PHE ASP ASP LEU ASN GLU TRP PRO PHE GLU LYS CYS PHE SEQRES 17 A 309 GLU PHE VAL GLN ALA VAL GLY LYS GLY TYR MSE ASP ALA SEQRES 18 A 309 TYR ILE PRO ILE VAL ASN ARG ARG LYS ASN THR PRO TYR SEQRES 19 A 309 THR GLU GLN GLN VAL GLU PHE GLN GLU PHE ARG ARG GLY SEQRES 20 A 309 ARG TYR ALA GLU PHE ASN LEU VAL ILE ASP ARG GLY THR SEQRES 21 A 309 LYS PHE GLY LEU GLN SER GLY GLY ARG THR GLU SER ILE SEQRES 22 A 309 LEU ILE SER LEU PRO PRO ARG ALA ARG TRP GLY TYR ASN SEQRES 23 A 309 TRP GLN PRO GLU PRO GLY THR PRO GLU ALA ARG LEU THR SEQRES 24 A 309 GLU TYR PHE LEU THR LYS ARG GLN TRP VAL SEQRES 1 B 309 MSE ALA HIS HIS HIS HIS HIS HIS MSE SER LEU ALA VAL SEQRES 2 B 309 GLU ALA VAL LYS ASP PHE LEU LEU LYS LEU GLN ASP ASP SEQRES 3 B 309 ILE CYS GLU ALA LEU GLU ALA GLU ASP GLY GLN ALA THR SEQRES 4 B 309 PHE VAL GLU ASP LYS TRP THR ARG GLU GLY GLY GLY GLY SEQRES 5 B 309 GLY ARG THR ARG VAL MSE VAL ASP GLY ALA VAL ILE GLU SEQRES 6 B 309 LYS GLY GLY VAL ASN PHE SER HIS VAL TYR GLY LYS GLY SEQRES 7 B 309 LEU PRO MSE SER SER THR GLU ARG HIS PRO ASP ILE ALA SEQRES 8 B 309 GLY CYS ASN PHE GLU ALA MSE GLY VAL SER LEU VAL ILE SEQRES 9 B 309 HIS PRO LYS ASN PRO HIS VAL PRO THR SER HIS ALA ASN SEQRES 10 B 309 VAL ARG LEU PHE VAL ALA GLU ARG GLU GLY LYS GLU PRO SEQRES 11 B 309 VAL TRP TRP PHE GLY GLY GLY PHE ASP LEU THR PRO TYR SEQRES 12 B 309 TYR ALA VAL GLU GLU ASP CYS ARG ASP PHE HIS GLN VAL SEQRES 13 B 309 ALA GLN ASP LEU CYS LYS PRO PHE GLY ALA ASP VAL TYR SEQRES 14 B 309 ALA ARG PHE LYS GLY TRP CYS ASP GLU TYR PHE PHE ILE SEQRES 15 B 309 PRO TYR ARG ASN GLU ALA ARG GLY ILE GLY GLY LEU PHE SEQRES 16 B 309 PHE ASP ASP LEU ASN GLU TRP PRO PHE GLU LYS CYS PHE SEQRES 17 B 309 GLU PHE VAL GLN ALA VAL GLY LYS GLY TYR MSE ASP ALA SEQRES 18 B 309 TYR ILE PRO ILE VAL ASN ARG ARG LYS ASN THR PRO TYR SEQRES 19 B 309 THR GLU GLN GLN VAL GLU PHE GLN GLU PHE ARG ARG GLY SEQRES 20 B 309 ARG TYR ALA GLU PHE ASN LEU VAL ILE ASP ARG GLY THR SEQRES 21 B 309 LYS PHE GLY LEU GLN SER GLY GLY ARG THR GLU SER ILE SEQRES 22 B 309 LEU ILE SER LEU PRO PRO ARG ALA ARG TRP GLY TYR ASN SEQRES 23 B 309 TRP GLN PRO GLU PRO GLY THR PRO GLU ALA ARG LEU THR SEQRES 24 B 309 GLU TYR PHE LEU THR LYS ARG GLN TRP VAL MODRES 2QT8 MSE A 1 MET SELENOMETHIONINE MODRES 2QT8 MSE A 50 MET SELENOMETHIONINE MODRES 2QT8 MSE A 73 MET SELENOMETHIONINE MODRES 2QT8 MSE A 90 MET SELENOMETHIONINE MODRES 2QT8 MSE A 211 MET SELENOMETHIONINE MODRES 2QT8 MSE B 1 MET SELENOMETHIONINE MODRES 2QT8 MSE B 50 MET SELENOMETHIONINE MODRES 2QT8 MSE B 73 MET SELENOMETHIONINE MODRES 2QT8 MSE B 90 MET SELENOMETHIONINE MODRES 2QT8 MSE B 211 MET SELENOMETHIONINE HET MSE A 1 12 HET MSE A 50 10 HET MSE A 73 8 HET MSE A 90 11 HET MSE A 211 8 HET MSE B 1 11 HET MSE B 50 10 HET MSE B 73 8 HET MSE B 90 10 HET MSE B 211 8 HET ACT A 302 4 HET ACT B 302 4 HET ACT B 303 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 6 HOH *532(H2 O) HELIX 1 1 MSE A 1 GLY A 28 1 28 HELIX 2 2 PRO A 72 GLU A 77 5 6 HELIX 3 3 VAL A 138 LYS A 154 1 17 HELIX 4 4 PRO A 155 GLY A 157 5 3 HELIX 5 5 ASP A 159 PHE A 172 1 14 HELIX 6 6 PRO A 175 ASN A 178 5 4 HELIX 7 7 PRO A 195 LYS A 222 1 28 HELIX 8 8 THR A 227 ILE A 248 1 22 HELIX 9 9 ASP A 249 SER A 258 1 10 HELIX 10 10 ARG A 261 LEU A 266 1 6 HELIX 11 11 ILE A 267 LEU A 269 5 3 HELIX 12 12 THR A 285 TYR A 293 1 9 HELIX 13 13 PHE A 294 LYS A 297 5 4 HELIX 14 14 HIS B -2 GLY B 28 1 31 HELIX 15 15 PRO B 72 THR B 76 5 5 HELIX 16 16 VAL B 138 LYS B 154 1 17 HELIX 17 17 PRO B 155 GLY B 157 5 3 HELIX 18 18 ASP B 159 PHE B 172 1 14 HELIX 19 19 PRO B 175 ASN B 178 5 4 HELIX 20 20 PRO B 195 LYS B 222 1 28 HELIX 21 21 THR B 227 ILE B 248 1 22 HELIX 22 22 ASP B 249 SER B 258 1 10 HELIX 23 23 ARG B 261 LEU B 266 1 6 HELIX 24 24 ILE B 267 LEU B 269 5 3 HELIX 25 25 THR B 285 TYR B 293 1 9 HELIX 26 26 TYR B 293 ARG B 298 1 6 SHEET 1 A 7 VAL A 33 THR A 38 0 SHEET 2 A 7 GLY A 43 VAL A 51 -1 O THR A 47 N ASP A 35 SHEET 3 A 7 ILE A 56 LYS A 69 -1 O HIS A 65 N GLY A 44 SHEET 4 A 7 ASN A 86 PRO A 98 -1 O SER A 93 N ASN A 62 SHEET 5 A 7 THR A 105 ARG A 117 -1 O GLU A 116 N ASN A 86 SHEET 6 A 7 LYS A 120 THR A 133 -1 O VAL A 123 N ALA A 115 SHEET 7 A 7 GLY A 184 LEU A 191 -1 O LEU A 191 N PHE A 126 SHEET 1 B 2 PHE A 173 ILE A 174 0 SHEET 2 B 2 GLU A 179 ALA A 180 -1 O GLU A 179 N ILE A 174 SHEET 1 C 2 ARG A 272 ARG A 274 0 SHEET 2 C 2 ARG B 272 ARG B 274 -1 O ALA B 273 N ALA A 273 SHEET 1 D 7 VAL B 33 THR B 38 0 SHEET 2 D 7 GLY B 43 VAL B 51 -1 O THR B 47 N ASP B 35 SHEET 3 D 7 ILE B 56 LYS B 69 -1 O HIS B 65 N GLY B 44 SHEET 4 D 7 ASN B 86 PRO B 98 -1 O SER B 93 N ASN B 62 SHEET 5 D 7 THR B 105 ARG B 117 -1 O LEU B 112 N MSE B 90 SHEET 6 D 7 LYS B 120 THR B 133 -1 O THR B 133 N THR B 105 SHEET 7 D 7 GLY B 184 LEU B 191 -1 O PHE B 188 N GLY B 128 SHEET 1 E 2 PHE B 173 ILE B 174 0 SHEET 2 E 2 GLU B 179 ALA B 180 -1 O GLU B 179 N ILE B 174 LINK C HIS A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N SER A 2 1555 1555 1.33 LINK C VAL A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N VAL A 51 1555 1555 1.33 LINK C PRO A 72 N MSE A 73 1555 1555 1.33 LINK C MSE A 73 N SER A 74 1555 1555 1.33 LINK C ALA A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N GLY A 91 1555 1555 1.32 LINK C TYR A 210 N MSE A 211 1555 1555 1.33 LINK C MSE A 211 N ASP A 212 1555 1555 1.33 LINK C HIS B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C VAL B 49 N MSE B 50 1555 1555 1.33 LINK C MSE B 50 N VAL B 51 1555 1555 1.33 LINK C PRO B 72 N MSE B 73 1555 1555 1.33 LINK C MSE B 73 N SER B 74 1555 1555 1.33 LINK C ALA B 89 N MSE B 90 1555 1555 1.33 LINK C MSE B 90 N GLY B 91 1555 1555 1.33 LINK C TYR B 210 N MSE B 211 1555 1555 1.33 LINK C MSE B 211 N ASP B 212 1555 1555 1.33 CRYST1 53.083 53.808 65.828 86.28 77.28 60.99 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018838 -0.010445 -0.004772 0.00000 SCALE2 0.000000 0.021250 0.001044 0.00000 SCALE3 0.000000 0.000000 0.015592 0.00000