HEADER PROTEIN TRANSPORT 02-AUG-07 2QTV TITLE STRUCTURE OF SEC23-SAR1 COMPLEXED WITH THE ACTIVE FRAGMENT OF SEC31 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC23; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SMALL COPII COAT GTPASE SAR1; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RESIDUES 23-189; COMPND 9 SYNONYM: GTP-BINDING PROTEIN SAR1, SECRETION-ASSOCIATED RAS-RELATED COMPND 10 PROTEIN 1; COMPND 11 EC: 3.6.5.-; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PROTEIN TRANSPORT PROTEIN SEC31; COMPND 15 CHAIN: D; COMPND 16 FRAGMENT: RESIDUES 899-947; COMPND 17 SYNONYM: PROTEIN WEB1; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SEC23; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 GENE: SAR1; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 19 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 20 ORGANISM_TAXID: 4932; SOURCE 21 GENE: SEC31, WEB1; SOURCE 22 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 23 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS COPII COAT, VESICULAR TRANSPORT, CYTOPLASM, CYTOPLASMIC VESICLE, KEYWDS 2 ENDOPLASMIC RETICULUM, ER-GOLGI TRANSPORT, GOLGI APPARATUS, KEYWDS 3 MEMBRANE, METAL-BINDING, PROTEIN TRANSPORT, UBL CONJUGATION, ZINC, KEYWDS 4 GTP-BINDING, HYDROLASE, NUCLEOTIDE-BINDING, PHOSPHORYLATION, WD KEYWDS 5 REPEAT EXPDTA X-RAY DIFFRACTION AUTHOR J.GOLDBERG,X.BI,J.D.MANCIAS REVDAT 5 21-FEB-24 2QTV 1 REMARK SEQADV LINK REVDAT 4 14-FEB-18 2QTV 1 REMARK REVDAT 3 25-OCT-17 2QTV 1 REMARK REVDAT 2 24-FEB-09 2QTV 1 VERSN REVDAT 1 15-JAN-08 2QTV 0 JRNL AUTH X.BI,J.D.MANCIAS,J.GOLDBERG JRNL TITL INSIGHTS INTO COPII COAT NUCLEATION FROM THE STRUCTURE OF JRNL TITL 2 SEC23.SAR1 COMPLEXED WITH THE ACTIVE FRAGMENT OF SEC31. JRNL REF DEV.CELL V. 13 635 2007 JRNL REFN ISSN 1534-5807 JRNL PMID 17981133 JRNL DOI 10.1016/J.DEVCEL.2007.10.006 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 718.00 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 32734 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1664 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7354 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.01700 REMARK 3 B22 (A**2) : 5.10800 REMARK 3 B33 (A**2) : -7.12500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.332 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.226 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.978 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.958 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 29.07 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GMPPNP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GMPPNP.TOPOL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QTV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : PRE-2007 X25 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35291 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM NACL, 20 MM HEPES, PH 7.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.37400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.60650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.37400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.60650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8230 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 LYS A 201 REMARK 465 PRO A 202 REMARK 465 THR A 203 REMARK 465 GLY A 204 REMARK 465 PRO A 205 REMARK 465 GLY A 206 REMARK 465 GLY A 207 REMARK 465 ALA A 208 REMARK 465 ALA A 209 REMARK 465 SER A 210 REMARK 465 HIS A 211 REMARK 465 LEU A 212 REMARK 465 PRO A 213 REMARK 465 ASN A 214 REMARK 465 ALA A 215 REMARK 465 MET A 216 REMARK 465 ASN A 217 REMARK 465 ALA A 466 REMARK 465 ALA A 467 REMARK 465 ASN A 468 REMARK 465 SER A 469 REMARK 465 ASN A 470 REMARK 465 PRO A 471 REMARK 465 MET A 472 REMARK 465 MET A 473 REMARK 465 SER A 474 REMARK 465 ALA A 475 REMARK 465 PRO A 476 REMARK 465 GLY A 477 REMARK 465 SER A 478 REMARK 465 ALA A 479 REMARK 465 ASP A 480 REMARK 465 ARG A 481 REMARK 465 PRO A 482 REMARK 465 SER B 157 REMARK 465 GLN B 158 REMARK 465 ARG B 159 REMARK 465 PRO D 899 REMARK 465 SER D 900 REMARK 465 GLN D 901 REMARK 465 PRO D 902 REMARK 465 PRO D 903 REMARK 465 ILE D 904 REMARK 465 ASN D 905 REMARK 465 ALA D 906 REMARK 465 PRO D 943 REMARK 465 PRO D 944 REMARK 465 ASN D 945 REMARK 465 ILE D 946 REMARK 465 LEU D 947 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 30 -60.59 60.76 REMARK 500 GLU A 45 73.27 -150.44 REMARK 500 PRO A 50 46.78 -67.14 REMARK 500 CYS A 61 -75.98 -104.42 REMARK 500 PRO A 73 -81.12 -44.78 REMARK 500 THR A 94 -74.52 -35.57 REMARK 500 LEU A 96 -163.43 -118.25 REMARK 500 SER A 97 140.15 166.90 REMARK 500 GLN A 98 -6.02 -56.70 REMARK 500 ASN A 100 43.77 -109.07 REMARK 500 THR A 131 47.08 -90.31 REMARK 500 ASN A 225 2.98 -69.07 REMARK 500 TYR A 277 46.93 -141.67 REMARK 500 ASN A 279 32.93 73.73 REMARK 500 ASP A 351 -169.56 -121.31 REMARK 500 LYS A 359 -53.33 -28.44 REMARK 500 THR A 542 -73.12 -110.12 REMARK 500 ASP A 570 73.46 -117.38 REMARK 500 THR A 614 21.56 -79.51 REMARK 500 PRO A 627 153.10 -49.42 REMARK 500 PHE A 659 -46.10 78.03 REMARK 500 TYR A 678 -26.51 -36.01 REMARK 500 GLN A 683 -40.84 77.71 REMARK 500 VAL A 703 -62.55 -10.83 REMARK 500 ASN B 33 1.19 91.79 REMARK 500 TRP B 55 -64.69 -93.08 REMARK 500 ALA B 63 50.31 -109.59 REMARK 500 LYS B 123 -39.11 -30.50 REMARK 500 LYS B 133 46.06 75.60 REMARK 500 ALA B 139 -171.54 -50.06 REMARK 500 THR B 155 -128.27 -69.71 REMARK 500 GLU B 161 -98.92 -104.19 REMARK 500 ARG B 176 70.84 62.67 REMARK 500 ASN B 177 141.77 -171.70 REMARK 500 PRO D 933 4.55 -68.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 800 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 56 SG REMARK 620 2 CYS A 61 SG 110.7 REMARK 620 3 CYS A 80 SG 105.5 117.9 REMARK 620 4 CYS A 83 SG 100.7 99.4 121.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 210 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 37 OG1 REMARK 620 2 THR B 54 OG1 77.3 REMARK 620 3 GNP B 200 O2B 83.7 157.4 REMARK 620 4 GNP B 200 O2G 162.4 85.9 111.3 REMARK 620 5 HOH B 213 O 73.5 96.0 90.2 114.1 REMARK 620 6 HOH B 219 O 77.5 75.8 88.3 93.4 150.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 200 DBREF 2QTV A 2 768 UNP P15303 SEC23_YEAST 2 768 DBREF 2QTV B 23 189 UNP P20606 SAR1_YEAST 23 189 DBREF 2QTV D 899 947 UNP P38968 SEC31_YEAST 899 947 SEQADV 2QTV GLY A -3 UNP P15303 EXPRESSION TAG SEQADV 2QTV ALA A -2 UNP P15303 EXPRESSION TAG SEQADV 2QTV MET A -1 UNP P15303 EXPRESSION TAG SEQADV 2QTV GLY A 0 UNP P15303 EXPRESSION TAG SEQADV 2QTV SER A 1 UNP P15303 EXPRESSION TAG SEQRES 1 A 772 GLY ALA MET GLY SER ASP PHE GLU THR ASN GLU ASP ILE SEQRES 2 A 772 ASN GLY VAL ARG PHE THR TRP ASN VAL PHE PRO SER THR SEQRES 3 A 772 ARG SER ASP ALA ASN SER ASN VAL VAL PRO VAL GLY CYS SEQRES 4 A 772 LEU TYR THR PRO LEU LYS GLU TYR ASP GLU LEU ASN VAL SEQRES 5 A 772 ALA PRO TYR ASN PRO VAL VAL CYS SER GLY PRO HIS CYS SEQRES 6 A 772 LYS SER ILE LEU ASN PRO TYR CYS VAL ILE ASP PRO ARG SEQRES 7 A 772 ASN SER SER TRP SER CYS PRO ILE CYS ASN SER ARG ASN SEQRES 8 A 772 HIS LEU PRO PRO GLN TYR THR ASN LEU SER GLN GLU ASN SEQRES 9 A 772 MET PRO LEU GLU LEU GLN SER THR THR ILE GLU TYR ILE SEQRES 10 A 772 THR ASN LYS PRO VAL THR VAL PRO PRO ILE PHE PHE PHE SEQRES 11 A 772 VAL VAL ASP LEU THR SER GLU THR GLU ASN LEU ASP SER SEQRES 12 A 772 LEU LYS GLU SER ILE ILE THR SER LEU SER LEU LEU PRO SEQRES 13 A 772 PRO ASN ALA LEU ILE GLY LEU ILE THR TYR GLY ASN VAL SEQRES 14 A 772 VAL GLN LEU HIS ASP LEU SER SER GLU THR ILE ASP ARG SEQRES 15 A 772 CYS ASN VAL PHE ARG GLY ASP ARG GLU TYR GLN LEU GLU SEQRES 16 A 772 ALA LEU THR GLU MET LEU THR GLY GLN LYS PRO THR GLY SEQRES 17 A 772 PRO GLY GLY ALA ALA SER HIS LEU PRO ASN ALA MET ASN SEQRES 18 A 772 LYS VAL THR PRO PHE SER LEU ASN ARG PHE PHE LEU PRO SEQRES 19 A 772 LEU GLU GLN VAL GLU PHE LYS LEU ASN GLN LEU LEU GLU SEQRES 20 A 772 ASN LEU SER PRO ASP GLN TRP SER VAL PRO ALA GLY HIS SEQRES 21 A 772 ARG PRO LEU ARG ALA THR GLY SER ALA LEU ASN ILE ALA SEQRES 22 A 772 SER LEU LEU LEU GLN GLY CYS TYR LYS ASN ILE PRO ALA SEQRES 23 A 772 ARG ILE ILE LEU PHE ALA SER GLY PRO GLY THR VAL ALA SEQRES 24 A 772 PRO GLY LEU ILE VAL ASN SER GLU LEU LYS ASP PRO LEU SEQRES 25 A 772 ARG SER HIS HIS ASP ILE ASP SER ASP HIS ALA GLN HIS SEQRES 26 A 772 TYR LYS LYS ALA CYS LYS PHE TYR ASN GLN ILE ALA GLN SEQRES 27 A 772 ARG VAL ALA ALA ASN GLY HIS THR VAL ASP ILE PHE ALA SEQRES 28 A 772 GLY CYS TYR ASP GLN ILE GLY MET SER GLU MET LYS GLN SEQRES 29 A 772 LEU THR ASP SER THR GLY GLY VAL LEU LEU LEU THR ASP SEQRES 30 A 772 ALA PHE SER THR ALA ILE PHE LYS GLN SER TYR LEU ARG SEQRES 31 A 772 LEU PHE ALA LYS ASP GLU GLU GLY TYR LEU LYS MET ALA SEQRES 32 A 772 PHE ASN GLY ASN MET ALA VAL LYS THR SER LYS ASP LEU SEQRES 33 A 772 LYS VAL GLN GLY LEU ILE GLY HIS ALA SER ALA VAL LYS SEQRES 34 A 772 LYS THR ASP ALA ASN ASN ILE SER GLU SER GLU ILE GLY SEQRES 35 A 772 ILE GLY ALA THR SER THR TRP LYS MET ALA SER LEU SER SEQRES 36 A 772 PRO TYR HIS SER TYR ALA ILE PHE PHE GLU ILE ALA ASN SEQRES 37 A 772 THR ALA ALA ASN SER ASN PRO MET MET SER ALA PRO GLY SEQRES 38 A 772 SER ALA ASP ARG PRO HIS LEU ALA TYR THR GLN PHE ILE SEQRES 39 A 772 THR THR TYR GLN HIS SER SER GLY THR ASN ARG ILE ARG SEQRES 40 A 772 VAL THR THR VAL ALA ASN GLN LEU LEU PRO PHE GLY THR SEQRES 41 A 772 PRO ALA ILE ALA ALA SER PHE ASP GLN GLU ALA ALA ALA SEQRES 42 A 772 VAL LEU MET ALA ARG ILE ALA VAL HIS LYS ALA GLU THR SEQRES 43 A 772 ASP ASP GLY ALA ASP VAL ILE ARG TRP LEU ASP ARG THR SEQRES 44 A 772 LEU ILE LYS LEU CYS GLN LYS TYR ALA ASP TYR ASN LYS SEQRES 45 A 772 ASP ASP PRO GLN SER PHE ARG LEU ALA PRO ASN PHE SER SEQRES 46 A 772 LEU TYR PRO GLN PHE THR TYR TYR LEU ARG ARG SER GLN SEQRES 47 A 772 PHE LEU SER VAL PHE ASN ASN SER PRO ASP GLU THR ALA SEQRES 48 A 772 PHE TYR ARG HIS ILE PHE THR ARG GLU ASP THR THR ASN SEQRES 49 A 772 SER LEU ILE MET ILE GLN PRO THR LEU THR SER PHE SER SEQRES 50 A 772 MET GLU ASP ASP PRO GLN PRO VAL LEU LEU ASP SER ILE SEQRES 51 A 772 SER VAL LYS PRO ASN THR ILE LEU LEU LEU ASP THR PHE SEQRES 52 A 772 PHE PHE ILE LEU ILE TYR HIS GLY GLU GLN ILE ALA GLN SEQRES 53 A 772 TRP ARG LYS ALA GLY TYR GLN ASP ASP PRO GLN TYR ALA SEQRES 54 A 772 ASP PHE LYS ALA LEU LEU GLU GLU PRO LYS LEU GLU ALA SEQRES 55 A 772 ALA GLU LEU LEU VAL ASP ARG PHE PRO LEU PRO ARG PHE SEQRES 56 A 772 ILE ASP THR GLU ALA GLY GLY SER GLN ALA ARG PHE LEU SEQRES 57 A 772 LEU SER LYS LEU ASN PRO SER ASP ASN TYR GLN ASP MET SEQRES 58 A 772 ALA ARG GLY GLY SER THR ILE VAL LEU THR ASP ASP VAL SEQRES 59 A 772 SER LEU GLN ASN PHE MET THR HIS LEU GLN GLN VAL ALA SEQRES 60 A 772 VAL SER GLY GLN ALA SEQRES 1 B 167 HIS GLY LYS LEU LEU PHE LEU GLY LEU ASP ASN ALA GLY SEQRES 2 B 167 LYS THR THR LEU LEU HIS MET LEU LYS ASN ASP ARG LEU SEQRES 3 B 167 ALA THR LEU GLN PRO THR TRP HIS PRO THR SER GLU GLU SEQRES 4 B 167 LEU ALA ILE GLY ASN ILE LYS PHE THR THR PHE ASP LEU SEQRES 5 B 167 GLY GLY HIS ILE GLN ALA ARG ARG LEU TRP LYS ASP TYR SEQRES 6 B 167 PHE PRO GLU VAL ASN GLY ILE VAL PHE LEU VAL ASP ALA SEQRES 7 B 167 ALA ASP PRO GLU ARG PHE ASP GLU ALA ARG VAL GLU LEU SEQRES 8 B 167 ASP ALA LEU PHE ASN ILE ALA GLU LEU LYS ASP VAL PRO SEQRES 9 B 167 PHE VAL ILE LEU GLY ASN LYS ILE ASP ALA PRO ASN ALA SEQRES 10 B 167 VAL SER GLU ALA GLU LEU ARG SER ALA LEU GLY LEU LEU SEQRES 11 B 167 ASN THR THR GLY SER GLN ARG ILE GLU GLY GLN ARG PRO SEQRES 12 B 167 VAL GLU VAL PHE MET CYS SER VAL VAL MET ARG ASN GLY SEQRES 13 B 167 TYR LEU GLU ALA PHE GLN TRP LEU SER GLN TYR SEQRES 1 D 49 PRO SER GLN PRO PRO ILE ASN ALA VAL SER GLY GLN THR SEQRES 2 D 49 PRO HIS LEU ASN ARG LYS ALA ASN ASP GLY TRP ASN ASP SEQRES 3 D 49 LEU PRO LEU LYS VAL LYS GLU LYS PRO SER ARG ALA LYS SEQRES 4 D 49 ALA VAL SER VAL ALA PRO PRO ASN ILE LEU HET ZN A 800 1 HET MG B 210 1 HET GNP B 200 32 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 4 ZN ZN 2+ FORMUL 5 MG MG 2+ FORMUL 6 GNP C10 H17 N6 O13 P3 FORMUL 7 HOH *231(H2 O) HELIX 1 1 ASP A 2 GLY A 11 1 10 HELIX 2 2 THR A 22 ASN A 29 1 8 HELIX 3 3 PRO A 102 SER A 107 1 6 HELIX 4 4 GLU A 133 SER A 149 1 17 HELIX 5 5 GLN A 189 GLY A 199 1 11 HELIX 6 6 SER A 223 PHE A 228 5 6 HELIX 7 7 LEU A 231 LEU A 245 1 15 HELIX 8 8 ALA A 261 TYR A 277 1 17 HELIX 9 9 SER A 310 SER A 316 1 7 HELIX 10 10 HIS A 321 GLY A 340 1 20 HELIX 11 11 GLY A 354 LYS A 359 1 6 HELIX 12 12 LYS A 359 SER A 364 1 6 HELIX 13 13 THR A 377 LEU A 387 1 11 HELIX 14 14 THR A 516 SER A 522 1 7 HELIX 15 15 ASP A 524 GLU A 541 1 18 HELIX 16 16 ASP A 544 ALA A 564 1 21 HELIX 17 17 LEU A 582 ARG A 592 1 11 HELIX 18 18 SER A 602 THR A 614 1 13 HELIX 19 19 ASP A 617 GLN A 626 1 10 HELIX 20 20 ASP A 644 VAL A 648 5 5 HELIX 21 21 GLY A 667 GLY A 677 1 11 HELIX 22 22 TYR A 678 ASP A 681 5 4 HELIX 23 23 ALA A 685 VAL A 703 1 19 HELIX 24 24 GLY A 718 GLN A 720 5 3 HELIX 25 25 ALA A 721 SER A 726 1 6 HELIX 26 26 SER A 751 VAL A 764 1 14 HELIX 27 27 GLY B 35 ASP B 46 1 12 HELIX 28 28 HIS B 77 PHE B 88 5 12 HELIX 29 29 ASP B 102 GLU B 104 5 3 HELIX 30 30 ARG B 105 ASN B 118 1 14 HELIX 31 31 SER B 141 LEU B 149 1 9 HELIX 32 32 GLY B 178 SER B 187 1 10 HELIX 33 33 ASN D 915 ASP D 920 1 6 SHEET 1 A 4 VAL A 12 PHE A 14 0 SHEET 2 A 4 VAL A 33 TYR A 37 -1 O LEU A 36 N ARG A 13 SHEET 3 A 4 TYR A 456 ILE A 462 -1 O TYR A 456 N TYR A 37 SHEET 4 A 4 LEU A 412 ILE A 418 -1 N GLY A 416 O PHE A 459 SHEET 1 B 4 VAL A 18 PRO A 20 0 SHEET 2 B 4 THR A 499 LEU A 512 1 O LEU A 512 N PHE A 19 SHEET 3 B 4 THR A 109 PRO A 117 -1 N TYR A 112 O ILE A 502 SHEET 4 B 4 VAL A 48 ALA A 49 1 N ALA A 49 O GLU A 111 SHEET 1 C 6 VAL A 18 PRO A 20 0 SHEET 2 C 6 THR A 499 LEU A 512 1 O LEU A 512 N PHE A 19 SHEET 3 C 6 LEU A 484 HIS A 495 -1 N PHE A 489 O THR A 505 SHEET 4 C 6 ALA A 399 THR A 408 -1 N ALA A 405 O ILE A 490 SHEET 5 C 6 THR A 444 LEU A 450 -1 O MET A 447 N GLY A 402 SHEET 6 C 6 SER A 422 ALA A 423 -1 N SER A 422 O LYS A 446 SHEET 1 D 3 ILE A 71 ASP A 72 0 SHEET 2 D 3 SER A 77 SER A 79 -1 O SER A 77 N ASP A 72 SHEET 3 D 3 ARG A 86 HIS A 88 -1 O ASN A 87 N TRP A 78 SHEET 1 E 4 ARG A 178 ARG A 183 0 SHEET 2 E 4 VAL A 165 ASP A 170 -1 N LEU A 168 O ASN A 180 SHEET 3 E 4 LEU A 156 TYR A 162 -1 N THR A 161 O GLN A 167 SHEET 4 E 4 LEU A 229 PRO A 230 -1 O LEU A 229 N ILE A 157 SHEET 1 F 7 ARG A 178 ARG A 183 0 SHEET 2 F 7 VAL A 165 ASP A 170 -1 N LEU A 168 O ASN A 180 SHEET 3 F 7 LEU A 156 TYR A 162 -1 N THR A 161 O GLN A 167 SHEET 4 F 7 ILE A 123 ASP A 129 1 N VAL A 128 O ILE A 160 SHEET 5 F 7 ALA A 282 ALA A 288 1 O ARG A 283 N PHE A 125 SHEET 6 F 7 HIS A 341 GLY A 348 1 O PHE A 346 N LEU A 286 SHEET 7 F 7 LEU A 369 THR A 372 1 O LEU A 370 N ALA A 347 SHEET 1 G 2 ASP A 565 ASN A 567 0 SHEET 2 G 2 ASP A 570 ARG A 575 -1 O ARG A 575 N ASP A 565 SHEET 1 H 5 GLN A 639 PRO A 640 0 SHEET 2 H 5 THR A 628 PHE A 632 -1 N SER A 631 O GLN A 639 SHEET 3 H 5 ILE A 653 ASP A 657 -1 O ILE A 653 N PHE A 632 SHEET 4 H 5 PHE A 661 HIS A 666 -1 O LEU A 663 N LEU A 656 SHEET 5 H 5 ARG A 710 GLU A 715 1 O ILE A 712 N ILE A 664 SHEET 1 I 6 THR B 58 LEU B 62 0 SHEET 2 I 6 PHE B 69 ASP B 73 -1 O PHE B 69 N LEU B 62 SHEET 3 I 6 LYS B 25 LEU B 29 1 N LEU B 26 O THR B 70 SHEET 4 I 6 GLY B 93 ASP B 99 1 O VAL B 95 N LEU B 27 SHEET 5 I 6 PHE B 127 ASN B 132 1 O VAL B 128 N PHE B 96 SHEET 6 I 6 VAL B 166 CYS B 171 1 O CYS B 171 N GLY B 131 LINK SG CYS A 56 ZN ZN A 800 1555 1555 2.37 LINK SG CYS A 61 ZN ZN A 800 1555 1555 2.40 LINK SG CYS A 80 ZN ZN A 800 1555 1555 2.41 LINK SG CYS A 83 ZN ZN A 800 1555 1555 2.42 LINK OG1 THR B 37 MG MG B 210 1555 1555 2.32 LINK OG1 THR B 54 MG MG B 210 1555 1555 2.22 LINK O2B GNP B 200 MG MG B 210 1555 1555 1.95 LINK O2G GNP B 200 MG MG B 210 1555 1555 1.98 LINK MG MG B 210 O HOH B 213 1555 1555 1.89 LINK MG MG B 210 O HOH B 219 1555 1555 2.28 CISPEP 1 ALA A 295 PRO A 296 0 0.12 CISPEP 2 PHE A 706 PRO A 707 0 0.05 SITE 1 AC1 4 CYS A 56 CYS A 61 CYS A 80 CYS A 83 SITE 1 AC2 5 THR B 37 THR B 54 GNP B 200 HOH B 213 SITE 2 AC2 5 HOH B 219 SITE 1 AC3 23 ARG A 722 ASP B 32 ASN B 33 ALA B 34 SITE 2 AC3 23 GLY B 35 LYS B 36 THR B 37 THR B 38 SITE 3 AC3 23 PRO B 53 THR B 54 GLY B 76 ASN B 132 SITE 4 AC3 23 LYS B 133 ASP B 135 SER B 172 VAL B 173 SITE 5 AC3 23 VAL B 174 MG B 210 HOH B 213 HOH B 219 SITE 6 AC3 23 HOH B 222 HOH B 227 HOH B 238 CRYST1 94.748 133.213 82.041 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010554 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007507 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012189 0.00000