data_2QUW # _entry.id 2QUW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2QUW pdb_00002quw 10.2210/pdb2quw/pdb NDB UR0122 ? ? RCSB RCSB044085 ? ? WWPDB D_1000044085 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_conn_type 6 3 'Structure model' struct_ncs_dom_lim 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.conn_type_id' 4 3 'Structure model' '_struct_conn.id' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 3 'Structure model' '_struct_conn_type.id' 22 3 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 23 3 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 24 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2QUW _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-08-06 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2GOZ . unspecified PDB 2QUS . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chi, Y.I.' 1 'Scott, W.G.' 2 'Kim, S.H.' 3 # _citation.id primary _citation.title 'Capturing hammerhead ribozyme structures in action by modulating general base catalysis.' _citation.journal_abbrev 'Plos Biol.' _citation.journal_volume 6 _citation.page_first e234 _citation.page_last e234 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1544-9173 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18834200 _citation.pdbx_database_id_DOI 10.1371/journal.pbio.0060234 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chi, Y.I.' 1 ? primary 'Martick, M.' 2 ? primary 'Lares, M.' 3 ? primary 'Kim, R.' 4 ? primary 'Scott, W.G.' 5 ? primary 'Kim, S.H.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Hammerhead ribozyme, cleaved fragment' 4065.259 2 ? G13A ? ;cyclic phosphate at 3'-end, residue CCC ; 2 polymer syn 'Hammerhead ribozyme, cleaved fragment' 18355.914 2 ? ? ? 'first residue A13G mutation' 3 non-polymer syn 'MAGNESIUM ION' 24.305 17 ? ? ? ? 4 water nat water 18.015 51 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no yes '(GTP)GGAGCCCUGU(CCC)' GGGAGCCCUGUC A,C ? 2 polyribonucleotide no no ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAGGACAAAACAGGGCUCCCGAAUU ACCGGAUGUGCUUUCCGGUCUGAUGAGUCCGUGAGGACAAAACAGGGCUCCCGAAUU B,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 G n 1 4 A n 1 5 G n 1 6 C n 1 7 C n 1 8 C n 1 9 U n 1 10 G n 1 11 U n 1 12 CCC n 2 1 A n 2 2 C n 2 3 C n 2 4 G n 2 5 G n 2 6 A n 2 7 U n 2 8 G n 2 9 U n 2 10 G n 2 11 C n 2 12 U n 2 13 U n 2 14 U n 2 15 C n 2 16 C n 2 17 G n 2 18 G n 2 19 U n 2 20 C n 2 21 U n 2 22 G n 2 23 A n 2 24 U n 2 25 G n 2 26 A n 2 27 G n 2 28 U n 2 29 C n 2 30 C n 2 31 G n 2 32 U n 2 33 G n 2 34 A n 2 35 G n 2 36 G n 2 37 A n 2 38 C n 2 39 A n 2 40 A n 2 41 A n 2 42 A n 2 43 C n 2 44 A n 2 45 G n 2 46 G n 2 47 G n 2 48 C n 2 49 U n 2 50 C n 2 51 C n 2 52 C n 2 53 G n 2 54 A n 2 55 A n 2 56 U n 2 57 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'in vitro T7 RNA polymerase transcription' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 A 4 4 4 A A A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 CCC 12 12 12 CCC CCC A . n B 2 1 A 1 13 13 A A B . n B 2 2 C 2 14 14 C C B . n B 2 3 C 3 15 15 C C B . n B 2 4 G 4 16 16 G G B . n B 2 5 G 5 17 17 G G B . n B 2 6 A 6 18 18 A A B . n B 2 7 U 7 19 19 U U B . n B 2 8 G 8 20 20 G G B . n B 2 9 U 9 21 21 U U B . n B 2 10 G 10 22 22 G G B . n B 2 11 C 11 23 23 C C B . n B 2 12 U 12 24 24 U U B . n B 2 13 U 13 25 25 U U B . n B 2 14 U 14 26 26 U U B . n B 2 15 C 15 27 27 C C B . n B 2 16 C 16 28 28 C C B . n B 2 17 G 17 29 29 G G B . n B 2 18 G 18 30 30 G G B . n B 2 19 U 19 31 31 U U B . n B 2 20 C 20 32 32 C C B . n B 2 21 U 21 33 33 U U B . n B 2 22 G 22 34 34 G G B . n B 2 23 A 23 35 35 A A B . n B 2 24 U 24 36 36 U U B . n B 2 25 G 25 37 37 G G B . n B 2 26 A 26 38 38 A A B . n B 2 27 G 27 39 39 G G B . n B 2 28 U 28 40 40 U U B . n B 2 29 C 29 41 41 C C B . n B 2 30 C 30 42 42 C C B . n B 2 31 G 31 43 43 G G B . n B 2 32 U 32 44 44 U U B . n B 2 33 G 33 45 45 G G B . n B 2 34 A 34 46 46 A A B . n B 2 35 G 35 47 47 G G B . n B 2 36 G 36 48 48 G G B . n B 2 37 A 37 49 49 A A B . n B 2 38 C 38 50 50 C C B . n B 2 39 A 39 51 51 A A B . n B 2 40 A 40 52 52 A A B . n B 2 41 A 41 53 53 A A B . n B 2 42 A 42 54 54 A A B . n B 2 43 C 43 55 55 C C B . n B 2 44 A 44 56 56 A A B . n B 2 45 G 45 57 57 G G B . n B 2 46 G 46 58 58 G G B . n B 2 47 G 47 59 59 G G B . n B 2 48 C 48 60 60 C C B . n B 2 49 U 49 61 61 U U B . n B 2 50 C 50 62 62 C C B . n B 2 51 C 51 63 63 C C B . n B 2 52 C 52 64 64 C C B . n B 2 53 G 53 65 65 G G B . n B 2 54 A 54 66 66 A A B . n B 2 55 A 55 67 67 A A B . n B 2 56 U 56 68 68 U U B . n B 2 57 U 57 69 69 U U B . n C 1 1 GTP 1 1 1 GTP GTP C . n C 1 2 G 2 2 2 G G C . n C 1 3 G 3 3 3 G G C . n C 1 4 A 4 4 4 A A C . n C 1 5 G 5 5 5 G G C . n C 1 6 C 6 6 6 C C C . n C 1 7 C 7 7 7 C C C . n C 1 8 C 8 8 8 C C C . n C 1 9 U 9 9 9 U U C . n C 1 10 G 10 10 10 G G C . n C 1 11 U 11 11 11 U U C . n C 1 12 CCC 12 12 12 CCC CCC C . n D 2 1 A 1 13 13 A A D . n D 2 2 C 2 14 14 C C D . n D 2 3 C 3 15 15 C C D . n D 2 4 G 4 16 16 G G D . n D 2 5 G 5 17 17 G G D . n D 2 6 A 6 18 18 A A D . n D 2 7 U 7 19 19 U U D . n D 2 8 G 8 20 20 G G D . n D 2 9 U 9 21 21 U U D . n D 2 10 G 10 22 22 G G D . n D 2 11 C 11 23 23 C C D . n D 2 12 U 12 24 24 U U D . n D 2 13 U 13 25 25 U U D . n D 2 14 U 14 26 26 U U D . n D 2 15 C 15 27 27 C C D . n D 2 16 C 16 28 28 C C D . n D 2 17 G 17 29 29 G G D . n D 2 18 G 18 30 30 G G D . n D 2 19 U 19 31 31 U U D . n D 2 20 C 20 32 32 C C D . n D 2 21 U 21 33 33 U U D . n D 2 22 G 22 34 34 G G D . n D 2 23 A 23 35 35 A A D . n D 2 24 U 24 36 36 U U D . n D 2 25 G 25 37 37 G G D . n D 2 26 A 26 38 38 A A D . n D 2 27 G 27 39 39 G G D . n D 2 28 U 28 40 40 U U D . n D 2 29 C 29 41 41 C C D . n D 2 30 C 30 42 42 C C D . n D 2 31 G 31 43 43 G G D . n D 2 32 U 32 44 44 U U D . n D 2 33 G 33 45 45 G G D . n D 2 34 A 34 46 46 A A D . n D 2 35 G 35 47 47 G G D . n D 2 36 G 36 48 48 G G D . n D 2 37 A 37 49 49 A A D . n D 2 38 C 38 50 50 C C D . n D 2 39 A 39 51 51 A A D . n D 2 40 A 40 52 52 A A D . n D 2 41 A 41 53 53 A A D . n D 2 42 A 42 54 54 A A D . n D 2 43 C 43 55 55 C C D . n D 2 44 A 44 56 56 A A D . n D 2 45 G 45 57 57 G G D . n D 2 46 G 46 58 58 G G D . n D 2 47 G 47 59 59 G G D . n D 2 48 C 48 60 60 C C D . n D 2 49 U 49 61 61 U U D . n D 2 50 C 50 62 62 C C D . n D 2 51 C 51 63 63 C C D . n D 2 52 C 52 64 64 C C D . n D 2 53 G 53 65 65 G G D . n D 2 54 A 54 66 66 A A D . n D 2 55 A 55 67 67 A A D . n D 2 56 U 56 68 68 U U D . n D 2 57 U 57 69 69 U U D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG 1 13 5 MG MG A . F 3 MG 1 1 1 MG MG B . G 3 MG 1 2 2 MG MG B . H 3 MG 1 4 4 MG MG B . I 3 MG 1 6 6 MG MG B . J 3 MG 1 7 7 MG MG B . K 3 MG 1 10 10 MG MG B . L 3 MG 1 70 13 MG MG B . M 3 MG 1 71 14 MG MG B . N 3 MG 1 72 17 MG MG B . O 3 MG 1 13 8 MG MG C . P 3 MG 1 14 9 MG MG C . Q 3 MG 1 3 3 MG MG D . R 3 MG 1 11 11 MG MG D . S 3 MG 1 12 12 MG MG D . T 3 MG 1 70 15 MG MG D . U 3 MG 1 71 16 MG MG D . V 4 HOH 1 49 49 HOH HOH A . W 4 HOH 1 73 1 HOH HOH B . W 4 HOH 2 74 3 HOH HOH B . W 4 HOH 3 75 5 HOH HOH B . W 4 HOH 4 76 10 HOH HOH B . W 4 HOH 5 77 12 HOH HOH B . W 4 HOH 6 78 14 HOH HOH B . W 4 HOH 7 79 15 HOH HOH B . W 4 HOH 8 80 16 HOH HOH B . W 4 HOH 9 81 18 HOH HOH B . W 4 HOH 10 82 19 HOH HOH B . W 4 HOH 11 83 20 HOH HOH B . W 4 HOH 12 84 21 HOH HOH B . W 4 HOH 13 85 22 HOH HOH B . W 4 HOH 14 86 23 HOH HOH B . W 4 HOH 15 87 28 HOH HOH B . W 4 HOH 16 88 31 HOH HOH B . W 4 HOH 17 89 33 HOH HOH B . W 4 HOH 18 90 34 HOH HOH B . W 4 HOH 19 91 35 HOH HOH B . W 4 HOH 20 92 37 HOH HOH B . W 4 HOH 21 93 38 HOH HOH B . W 4 HOH 22 94 41 HOH HOH B . W 4 HOH 23 95 44 HOH HOH B . W 4 HOH 24 96 45 HOH HOH B . W 4 HOH 25 97 47 HOH HOH B . W 4 HOH 26 98 48 HOH HOH B . W 4 HOH 27 99 51 HOH HOH B . X 4 HOH 1 15 7 HOH HOH C . X 4 HOH 2 16 11 HOH HOH C . X 4 HOH 3 17 24 HOH HOH C . X 4 HOH 4 18 27 HOH HOH C . X 4 HOH 5 19 39 HOH HOH C . X 4 HOH 6 20 40 HOH HOH C . X 4 HOH 7 21 42 HOH HOH C . X 4 HOH 8 22 46 HOH HOH C . X 4 HOH 9 23 50 HOH HOH C . Y 4 HOH 1 72 2 HOH HOH D . Y 4 HOH 2 73 4 HOH HOH D . Y 4 HOH 3 74 6 HOH HOH D . Y 4 HOH 4 75 8 HOH HOH D . Y 4 HOH 5 76 9 HOH HOH D . Y 4 HOH 6 77 13 HOH HOH D . Y 4 HOH 7 78 17 HOH HOH D . Y 4 HOH 8 79 25 HOH HOH D . Y 4 HOH 9 80 26 HOH HOH D . Y 4 HOH 10 81 29 HOH HOH D . Y 4 HOH 11 82 30 HOH HOH D . Y 4 HOH 12 83 32 HOH HOH D . Y 4 HOH 13 84 36 HOH HOH D . Y 4 HOH 14 85 43 HOH HOH D . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 # _cell.length_a 28.030 _cell.length_b 53.140 _cell.length_c 72.050 _cell.angle_alpha 74.240 _cell.angle_beta 81.370 _cell.angle_gamma 75.650 _cell.entry_id 2QUW _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1' _symmetry.entry_id 2QUW _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 1 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 2QUW _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_percent_sol 44.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 2QUW _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 19.460 _reflns.number_all 17539 _reflns.number_obs 15733 _reflns.percent_possible_obs 89.43 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 3.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.6 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 2QUW _refine.ls_d_res_high 2.200 _refine.ls_d_res_low 19.460 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 89.560 _refine.ls_number_reflns_obs 17539 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.205 _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.262 _refine.ls_percent_reflns_R_free 10.300 _refine.ls_number_reflns_R_free 1806 _refine.B_iso_mean 70.969 _refine.aniso_B[1][1] 2.610 _refine.aniso_B[2][2] -0.810 _refine.aniso_B[3][3] -2.760 _refine.aniso_B[1][2] 1.990 _refine.aniso_B[1][3] 0.050 _refine.aniso_B[2][3] -0.070 _refine.correlation_coeff_Fo_to_Fc 0.969 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.pdbx_overall_ESU_R_Free 0.272 _refine.overall_SU_ML 0.259 _refine.overall_SU_B 22.613 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2966 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 3034 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 19.460 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 3316 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 5150 1.762 3.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 678 0.079 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1430 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1189 0.192 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 2041 0.277 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 101 0.154 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 33 0.153 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 8 0.201 0.200 ? 'X-RAY DIFFRACTION' ? r_scbond_it 4702 1.628 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 5150 2.623 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_asym_id 1 'MEDIUM POSITIONAL' A 237 0.530 0.500 ? ? ? ? ? 1 'X-RAY DIFFRACTION' 1 ? 1 'MEDIUM THERMAL' A 237 0.710 2.000 ? ? ? ? ? 1 'X-RAY DIFFRACTION' 2 ? 1 'MEDIUM POSITIONAL' B 170 0.290 0.500 ? ? ? ? ? 2 'X-RAY DIFFRACTION' 3 ? 1 'MEDIUM THERMAL' B 170 0.640 2.000 ? ? ? ? ? 2 'X-RAY DIFFRACTION' 4 ? 1 'MEDIUM POSITIONAL' B 359 0.250 0.500 ? ? ? ? ? 3 'X-RAY DIFFRACTION' 5 ? 1 'MEDIUM THERMAL' B 359 0.590 2.000 ? ? ? ? ? 3 'X-RAY DIFFRACTION' 6 ? 1 'MEDIUM POSITIONAL' B 332 0.410 0.500 ? ? ? ? ? 4 'X-RAY DIFFRACTION' 7 ? 1 'MEDIUM THERMAL' B 332 0.550 2.000 ? ? ? ? ? 4 'X-RAY DIFFRACTION' 8 ? 1 'MEDIUM POSITIONAL' B 100 0.280 0.500 ? ? ? ? ? 5 'X-RAY DIFFRACTION' 9 ? 1 'MEDIUM THERMAL' B 100 0.770 2.000 ? ? ? ? ? 5 'X-RAY DIFFRACTION' 10 ? # _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.256 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 85.960 _refine_ls_shell.number_reflns_R_work 1109 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.362 _refine_ls_shell.R_factor_R_free 0.399 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 122 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1231 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 C 2 1 B 2 2 D 3 1 B 3 2 D 4 1 B 4 2 D 5 1 B 5 2 D # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A G 2 . A CCC 12 . A G 2 A CCC 12 4 ? 1 2 1 C G 2 . C CCC 12 . C G 2 C CCC 12 4 ? 2 1 1 B A 1 . B G 8 . B A 13 B G 20 4 ? 2 2 1 D A 1 . D G 8 . D A 13 D G 20 4 ? 3 1 1 B U 14 . B C 30 . B U 26 B C 42 4 ? 3 2 1 D U 14 . D C 30 . D U 26 D C 42 4 ? 4 1 1 B G 33 . B G 47 . B G 45 B G 59 4 ? 4 2 1 D G 33 . D G 47 . D G 45 D G 59 4 ? 5 1 1 B C 48 . B C 52 . B C 60 B C 64 4 ? 5 2 1 D C 48 . D C 52 . D C 60 D C 64 4 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? 4 ? 5 ? # _struct.entry_id 2QUW _struct.title 'Hammerhead Ribozyme G12A mutant after cleavage' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QUW _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Hammerhead ribozyme, ribozyme, catalytic RNA, ribozyme-product complex, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 3 ? U N N 3 ? V N N 4 ? W N N 4 ? X N N 4 ? Y N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2QUW 2QUW 1 ? ? ? 2 PDB 2QUW 2QUW 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QUW A 1 ? 12 ? 2QUW 1 ? 12 ? 1 12 2 1 2QUW C 1 ? 12 ? 2QUW 1 ? 12 ? 1 12 3 2 2QUW B 1 ? 57 ? 2QUW 13 ? 69 ? 13 69 4 2 2QUW D 1 ? 57 ? 2QUW 13 ? 69 ? 13 69 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3310 ? 1 MORE -72 ? 1 'SSA (A^2)' 11420 ? 2 'ABSA (A^2)' 2940 ? 2 MORE -52 ? 2 'SSA (A^2)' 11470 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,J,K,L,M,N,V,W 2 1 C,D,O,P,Q,R,S,T,U,X,Y # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.585 ? ? covale2 covale both ? A U 11 "O3'" ? ? ? 1_555 A CCC 12 P ? ? A U 11 A CCC 12 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale3 covale both ? C GTP 1 "O3'" ? ? ? 1_555 C G 2 P ? ? C GTP 1 C G 2 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale4 covale both ? C U 11 "O3'" ? ? ? 1_555 C CCC 12 P ? ? C U 11 C CCC 12 1_555 ? ? ? ? ? ? ? 1.588 ? ? metalc1 metalc ? ? F MG . MG ? ? ? 1_555 W HOH . O ? ? B MG 1 B HOH 78 1_555 ? ? ? ? ? ? ? 2.329 ? ? metalc2 metalc ? ? I MG . MG ? ? ? 1_555 B A 26 OP2 ? ? B MG 6 B A 38 1_555 ? ? ? ? ? ? ? 2.183 ? ? metalc3 metalc ? ? B G 10 N2 ? ? ? 1_555 L MG . MG ? ? B G 22 B MG 70 1_555 ? ? ? ? ? ? ? 2.232 ? ? metalc4 metalc ? ? B G 10 N3 ? ? ? 1_555 L MG . MG ? ? B G 22 B MG 70 1_555 ? ? ? ? ? ? ? 1.940 ? ? metalc5 metalc ? ? B C 11 "O4'" ? ? ? 1_555 L MG . MG ? ? B C 23 B MG 70 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc6 metalc ? ? B G 45 N7 ? ? ? 1_555 M MG . MG ? ? B G 57 B MG 71 1_555 ? ? ? ? ? ? ? 2.423 ? ? metalc7 metalc ? ? C C 6 OP2 ? ? ? 1_555 P MG . MG ? ? C C 6 C MG 14 1_555 ? ? ? ? ? ? ? 2.488 ? ? metalc8 metalc ? ? R MG . MG ? ? ? 1_555 D G 45 "O3'" ? ? D MG 11 D G 57 1_555 ? ? ? ? ? ? ? 2.333 ? ? metalc9 metalc ? ? R MG . MG ? ? ? 1_555 D G 45 "O2'" ? ? D MG 11 D G 57 1_555 ? ? ? ? ? ? ? 2.169 ? ? hydrog1 hydrog ? ? A GTP 1 N1 ? ? ? 1_555 B C 52 N3 ? ? A GTP 1 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A GTP 1 N2 ? ? ? 1_555 B C 52 O2 ? ? A GTP 1 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A GTP 1 O6 ? ? ? 1_555 B C 52 N4 ? ? A GTP 1 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 51 N3 ? ? A G 2 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 51 O2 ? ? A G 2 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 51 N4 ? ? A G 2 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 50 N3 ? ? A G 3 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 50 O2 ? ? A G 3 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 50 N4 ? ? A G 3 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 B U 49 N3 ? ? A A 4 B U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 49 O4 ? ? A A 4 B U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 48 N3 ? ? A G 5 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 48 O2 ? ? A G 5 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 48 N4 ? ? A G 5 B C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 47 N1 ? ? A C 6 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 47 O6 ? ? A C 6 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 47 N2 ? ? A C 6 B G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 46 N1 ? ? A C 7 B G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 46 O6 ? ? A C 7 B G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 46 N2 ? ? A C 7 B G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 45 N1 ? ? A C 8 B G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 45 O6 ? ? A C 8 B G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 45 N2 ? ? A C 8 B G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 9 N3 ? ? ? 1_555 B A 44 N1 ? ? A U 9 B A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 9 O4 ? ? ? 1_555 B A 44 N6 ? ? A U 9 B A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 N1 ? ? ? 1_555 B C 43 N3 ? ? A G 10 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 10 N2 ? ? ? 1_555 B C 43 O2 ? ? A G 10 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 10 O6 ? ? ? 1_555 B C 43 N4 ? ? A G 10 B C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 42 N1 ? ? A U 11 B A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 42 N6 ? ? A U 11 B A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A CCC 12 O2 ? ? ? 1_555 B A 40 N6 ? ? A CCC 12 B A 52 1_555 ? ? ? ? ? ? 'CCC-A MISPAIR' ? ? ? hydrog32 hydrog ? ? A CCC 12 O2 ? ? ? 1_555 B A 41 N6 ? ? A CCC 12 B A 53 1_555 ? ? ? ? ? ? 'CCC-A MISPAIR' ? ? ? hydrog33 hydrog ? ? B A 1 N1 ? ? ? 1_555 B U 19 N3 ? ? B A 13 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B A 1 N6 ? ? ? 1_555 B U 19 O4 ? ? B A 13 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 18 N1 ? ? B C 14 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 18 O6 ? ? B C 14 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 18 N2 ? ? B C 14 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B C 3 N3 ? ? ? 1_555 B G 17 N1 ? ? B C 15 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B C 3 N4 ? ? ? 1_555 B G 17 O6 ? ? B C 15 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B C 3 O2 ? ? ? 1_555 B G 17 N2 ? ? B C 15 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 16 N3 ? ? B G 16 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 16 O2 ? ? B G 16 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 16 N4 ? ? B G 16 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 15 N3 ? ? B G 17 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 15 O2 ? ? B G 17 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 15 N4 ? ? B G 17 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B A 6 N1 ? ? ? 1_555 B U 14 N3 ? ? B A 18 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B A 6 N6 ? ? ? 1_555 B U 14 O4 ? ? B A 18 B U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 34 N7 ? ? B U 19 B A 46 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog50 hydrog ? ? B U 7 O2 ? ? ? 1_555 B A 34 N6 ? ? B U 19 B A 46 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog51 hydrog ? ? B G 8 N2 ? ? ? 1_555 B U 9 O4 ? ? B G 20 B U 21 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog52 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 34 N1 ? ? B U 24 B A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 34 N6 ? ? B U 24 B A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 25 N1 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 25 O6 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 25 N2 ? ? B C 32 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 22 N2 ? ? ? 1_555 B A 41 N1 ? ? B G 34 B A 53 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog58 hydrog ? ? B A 26 N6 ? ? ? 1_555 B A 39 N3 ? ? B A 38 B A 51 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog59 hydrog ? ? B G 27 N1 ? ? ? 1_555 B C 38 N3 ? ? B G 39 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B G 27 N2 ? ? ? 1_555 B C 38 O2 ? ? B G 39 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B G 27 O6 ? ? ? 1_555 B C 38 N4 ? ? B G 39 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B U 28 N3 ? ? ? 1_555 B A 37 N1 ? ? B U 40 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B U 28 O4 ? ? ? 1_555 B A 37 N6 ? ? B U 40 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B C 29 N3 ? ? ? 1_555 B G 36 N1 ? ? B C 41 B G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B C 29 N4 ? ? ? 1_555 B G 36 O6 ? ? B C 41 B G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B C 29 O2 ? ? ? 1_555 B G 36 N2 ? ? B C 41 B G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B C 30 N3 ? ? ? 1_555 B G 35 N1 ? ? B C 42 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B C 30 N4 ? ? ? 1_555 B G 35 O6 ? ? B C 42 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B C 30 O2 ? ? ? 1_555 B G 35 N2 ? ? B C 42 B G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C GTP 1 N1 ? ? ? 1_555 D C 52 N3 ? ? C GTP 1 D C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C GTP 1 N2 ? ? ? 1_555 D C 52 O2 ? ? C GTP 1 D C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C GTP 1 O6 ? ? ? 1_555 D C 52 N4 ? ? C GTP 1 D C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 51 N3 ? ? C G 2 D C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 51 O2 ? ? C G 2 D C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 51 N4 ? ? C G 2 D C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 50 N3 ? ? C G 3 D C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 50 O2 ? ? C G 3 D C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 50 N4 ? ? C G 3 D C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C A 4 N1 ? ? ? 1_555 D U 49 N3 ? ? C A 4 D U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? C A 4 N6 ? ? ? 1_555 D U 49 O4 ? ? C A 4 D U 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? C G 5 N1 ? ? ? 1_555 D C 48 N3 ? ? C G 5 D C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C G 5 N2 ? ? ? 1_555 D C 48 O2 ? ? C G 5 D C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C G 5 O6 ? ? ? 1_555 D C 48 N4 ? ? C G 5 D C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? C C 6 N3 ? ? ? 1_555 D G 47 N1 ? ? C C 6 D G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? C C 6 N4 ? ? ? 1_555 D G 47 O6 ? ? C C 6 D G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? C C 6 O2 ? ? ? 1_555 D G 47 N2 ? ? C C 6 D G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? C C 7 N3 ? ? ? 1_555 D G 46 N1 ? ? C C 7 D G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? C C 7 N4 ? ? ? 1_555 D G 46 O6 ? ? C C 7 D G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? C C 7 O2 ? ? ? 1_555 D G 46 N2 ? ? C C 7 D G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? C C 8 N3 ? ? ? 1_555 D G 45 N1 ? ? C C 8 D G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? C C 8 N4 ? ? ? 1_555 D G 45 O6 ? ? C C 8 D G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? C C 8 O2 ? ? ? 1_555 D G 45 N2 ? ? C C 8 D G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? C U 9 N3 ? ? ? 1_555 D A 44 N1 ? ? C U 9 D A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? C U 9 O4 ? ? ? 1_555 D A 44 N6 ? ? C U 9 D A 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? C G 10 N1 ? ? ? 1_555 D C 43 N3 ? ? C G 10 D C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? C G 10 N2 ? ? ? 1_555 D C 43 O2 ? ? C G 10 D C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? C G 10 O6 ? ? ? 1_555 D C 43 N4 ? ? C G 10 D C 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? C U 11 N3 ? ? ? 1_555 D A 42 N1 ? ? C U 11 D A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? C U 11 O4 ? ? ? 1_555 D A 42 N6 ? ? C U 11 D A 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? C CCC 12 O2 ? ? ? 1_555 D A 40 N6 ? ? C CCC 12 D A 52 1_555 ? ? ? ? ? ? 'CCC-A MISPAIR' ? ? ? hydrog101 hydrog ? ? C CCC 12 O2 ? ? ? 1_555 D A 41 N6 ? ? C CCC 12 D A 53 1_555 ? ? ? ? ? ? 'CCC-A MISPAIR' ? ? ? hydrog102 hydrog ? ? D A 1 N1 ? ? ? 1_555 D U 19 N3 ? ? D A 13 D U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? D A 1 N6 ? ? ? 1_555 D U 19 O4 ? ? D A 13 D U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? D C 2 N3 ? ? ? 1_555 D G 18 N1 ? ? D C 14 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? D C 2 N4 ? ? ? 1_555 D G 18 O6 ? ? D C 14 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? D C 2 O2 ? ? ? 1_555 D G 18 N2 ? ? D C 14 D G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? D C 3 N3 ? ? ? 1_555 D G 17 N1 ? ? D C 15 D G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? D C 3 N4 ? ? ? 1_555 D G 17 O6 ? ? D C 15 D G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? D C 3 O2 ? ? ? 1_555 D G 17 N2 ? ? D C 15 D G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? D G 4 N1 ? ? ? 1_555 D C 16 N3 ? ? D G 16 D C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? D G 4 N2 ? ? ? 1_555 D C 16 O2 ? ? D G 16 D C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? D G 4 O6 ? ? ? 1_555 D C 16 N4 ? ? D G 16 D C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? D G 5 N1 ? ? ? 1_555 D C 15 N3 ? ? D G 17 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? D G 5 N2 ? ? ? 1_555 D C 15 O2 ? ? D G 17 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? D G 5 O6 ? ? ? 1_555 D C 15 N4 ? ? D G 17 D C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? D A 6 N1 ? ? ? 1_555 D U 14 N3 ? ? D A 18 D U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? D A 6 N6 ? ? ? 1_555 D U 14 O4 ? ? D A 18 D U 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? D U 7 N3 ? ? ? 1_555 D A 34 N7 ? ? D U 19 D A 46 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog119 hydrog ? ? D U 7 O2 ? ? ? 1_555 D A 34 N6 ? ? D U 19 D A 46 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog120 hydrog ? ? D U 12 N3 ? ? ? 1_555 D A 34 N1 ? ? D U 24 D A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? D U 12 O4 ? ? ? 1_555 D A 34 N6 ? ? D U 24 D A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? D C 20 N3 ? ? ? 1_555 D G 25 N1 ? ? D C 32 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? D C 20 N4 ? ? ? 1_555 D G 25 O6 ? ? D C 32 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? D C 20 O2 ? ? ? 1_555 D G 25 N2 ? ? D C 32 D G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? D G 22 N2 ? ? ? 1_555 D A 41 N1 ? ? D G 34 D A 53 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog126 hydrog ? ? D A 26 N6 ? ? ? 1_555 D A 39 N3 ? ? D A 38 D A 51 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog127 hydrog ? ? D G 27 N1 ? ? ? 1_555 D C 38 O2 ? ? D G 39 D C 50 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog128 hydrog ? ? D U 28 N3 ? ? ? 1_555 D A 37 N1 ? ? D U 40 D A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? D U 28 O4 ? ? ? 1_555 D A 37 N6 ? ? D U 40 D A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? D C 29 N3 ? ? ? 1_555 D G 36 N1 ? ? D C 41 D G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? D C 29 N4 ? ? ? 1_555 D G 36 O6 ? ? D C 41 D G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? D C 29 O2 ? ? ? 1_555 D G 36 N2 ? ? D C 41 D G 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? D C 30 N3 ? ? ? 1_555 D G 35 N1 ? ? D C 42 D G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog134 hydrog ? ? D C 30 N4 ? ? ? 1_555 D G 35 O6 ? ? D C 42 D G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? D C 30 O2 ? ? ? 1_555 D G 35 N2 ? ? D C 42 D G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N2 ? B G 10 ? B G 22 ? 1_555 MG ? L MG . ? B MG 70 ? 1_555 N3 ? B G 10 ? B G 22 ? 1_555 67.5 ? 2 N2 ? B G 10 ? B G 22 ? 1_555 MG ? L MG . ? B MG 70 ? 1_555 "O4'" ? B C 11 ? B C 23 ? 1_555 86.1 ? 3 N3 ? B G 10 ? B G 22 ? 1_555 MG ? L MG . ? B MG 70 ? 1_555 "O4'" ? B C 11 ? B C 23 ? 1_555 149.1 ? 4 "O3'" ? D G 45 ? D G 57 ? 1_555 MG ? R MG . ? D MG 11 ? 1_555 "O2'" ? D G 45 ? D G 57 ? 1_555 82.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 13 ? 2 'BINDING SITE FOR RESIDUE MG A 13' AC2 Software B MG 1 ? 1 'BINDING SITE FOR RESIDUE MG B 1' AC3 Software B MG 2 ? 3 'BINDING SITE FOR RESIDUE MG B 2' AC4 Software B MG 4 ? 4 'BINDING SITE FOR RESIDUE MG B 4' AC5 Software B MG 6 ? 1 'BINDING SITE FOR RESIDUE MG B 6' AC6 Software B MG 7 ? 4 'BINDING SITE FOR RESIDUE MG B 7' AC7 Software B MG 10 ? 2 'BINDING SITE FOR RESIDUE MG B 10' AC8 Software B MG 70 ? 3 'BINDING SITE FOR RESIDUE MG B 70' AC9 Software B MG 71 ? 2 'BINDING SITE FOR RESIDUE MG B 71' BC1 Software B MG 72 ? 3 'BINDING SITE FOR RESIDUE MG B 72' BC2 Software C MG 14 ? 2 'BINDING SITE FOR RESIDUE MG C 14' BC3 Software D MG 11 ? 2 'BINDING SITE FOR RESIDUE MG D 11' BC4 Software D MG 12 ? 4 'BINDING SITE FOR RESIDUE MG D 12' BC5 Software D MG 70 ? 3 'BINDING SITE FOR RESIDUE MG D 70' BC6 Software D MG 71 ? 3 'BINDING SITE FOR RESIDUE MG D 71' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 CCC A 12 ? CCC A 12 . ? 1_555 ? 2 AC1 2 C B 2 ? C B 14 . ? 1_555 ? 3 AC2 1 HOH W . ? HOH B 78 . ? 1_555 ? 4 AC3 3 G B 10 ? G B 22 . ? 1_555 ? 5 AC3 3 C B 11 ? C B 23 . ? 1_555 ? 6 AC3 3 G B 33 ? G B 45 . ? 1_555 ? 7 AC4 4 A B 26 ? A B 38 . ? 1_555 ? 8 AC4 4 G B 27 ? G B 39 . ? 1_555 ? 9 AC4 4 A B 39 ? A B 51 . ? 1_555 ? 10 AC4 4 A B 40 ? A B 52 . ? 1_555 ? 11 AC5 1 A B 26 ? A B 38 . ? 1_555 ? 12 AC6 4 G A 10 ? G A 10 . ? 1_555 ? 13 AC6 4 U A 11 ? U A 11 . ? 1_555 ? 14 AC6 4 G B 22 ? G B 34 . ? 1_555 ? 15 AC6 4 C B 43 ? C B 55 . ? 1_555 ? 16 AC7 2 A B 54 ? A B 66 . ? 1_555 ? 17 AC7 2 A D 6 ? A D 18 . ? 1_455 ? 18 AC8 3 G B 10 ? G B 22 . ? 1_555 ? 19 AC8 3 C B 11 ? C B 23 . ? 1_555 ? 20 AC8 3 U B 12 ? U B 24 . ? 1_555 ? 21 AC9 2 A B 44 ? A B 56 . ? 1_555 ? 22 AC9 2 G B 45 ? G B 57 . ? 1_555 ? 23 BC1 3 C B 16 ? C B 28 . ? 1_555 ? 24 BC1 3 G B 17 ? G B 29 . ? 1_555 ? 25 BC1 3 GTP C 1 ? GTP C 1 . ? 1_455 ? 26 BC2 2 G C 5 ? G C 5 . ? 1_555 ? 27 BC2 2 C C 6 ? C C 6 . ? 1_555 ? 28 BC3 2 G D 45 ? G D 57 . ? 1_555 ? 29 BC3 2 G D 46 ? G D 58 . ? 1_555 ? 30 BC4 4 U D 7 ? U D 19 . ? 1_555 ? 31 BC4 4 G D 8 ? G D 20 . ? 1_555 ? 32 BC4 4 G D 10 ? G D 22 . ? 1_555 ? 33 BC4 4 G D 33 ? G D 45 . ? 1_555 ? 34 BC5 3 U C 11 ? U C 11 . ? 1_555 ? 35 BC5 3 G D 22 ? G D 34 . ? 1_555 ? 36 BC5 3 C D 43 ? C D 55 . ? 1_555 ? 37 BC6 3 G D 8 ? G D 20 . ? 1_555 ? 38 BC6 3 G D 10 ? G D 22 . ? 1_555 ? 39 BC6 3 G D 33 ? G D 45 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A G 3 ? ? "C5'" A G 3 ? ? "C4'" A G 3 ? ? 103.45 109.40 -5.95 0.80 N 2 1 "O3'" A U 11 ? ? P A CCC 12 ? ? "O5'" A CCC 12 ? ? 116.96 104.00 12.96 1.90 Y 3 1 "C4'" B U 19 ? ? "C3'" B U 19 ? ? "C2'" B U 19 ? ? 96.35 102.60 -6.25 1.00 N 4 1 "C3'" B U 19 ? ? "C2'" B U 19 ? ? "C1'" B U 19 ? ? 93.35 101.30 -7.95 0.70 N 5 1 "O4'" B U 19 ? ? "C1'" B U 19 ? ? N1 B U 19 ? ? 114.22 108.50 5.72 0.70 N 6 1 "C3'" B U 19 ? ? "O3'" B U 19 ? ? P B G 20 ? ? 129.03 119.70 9.33 1.20 Y 7 1 "O4'" B U 25 ? ? "C1'" B U 25 ? ? N1 B U 25 ? ? 112.90 108.50 4.40 0.70 N 8 1 "O4'" B U 33 ? ? "C4'" B U 33 ? ? "C3'" B U 33 ? ? 97.22 104.00 -6.78 1.00 N 9 1 "C4'" B U 33 ? ? "C3'" B U 33 ? ? "C2'" B U 33 ? ? 96.25 102.60 -6.35 1.00 N 10 1 "C3'" B U 33 ? ? "C2'" B U 33 ? ? "C1'" B U 33 ? ? 95.62 101.30 -5.68 0.70 N 11 1 "O4'" B A 49 ? ? "C1'" B A 49 ? ? N9 B A 49 ? ? 113.32 108.50 4.82 0.70 N 12 1 "O4'" B C 50 ? ? "C1'" B C 50 ? ? N1 B C 50 ? ? 113.23 108.50 4.73 0.70 N 13 1 "O4'" B A 51 ? ? "C1'" B A 51 ? ? N9 B A 51 ? ? 118.78 108.50 10.28 0.70 N 14 1 "O3'" C GTP 1 ? ? P C G 2 ? ? "O5'" C G 2 ? ? 125.55 104.00 21.55 1.90 Y 15 1 "O4'" C G 3 ? ? "C1'" C G 3 ? ? N9 C G 3 ? ? 113.61 108.50 5.11 0.70 N 16 1 "C3'" C U 11 ? ? "O3'" C U 11 ? ? P C CCC 12 ? ? 134.67 119.70 14.97 1.20 Y 17 1 "O3'" C U 11 ? ? P C CCC 12 ? ? OP2 C CCC 12 ? ? 82.17 105.20 -23.03 2.20 Y 18 1 "O3'" C U 11 ? ? P C CCC 12 ? ? OP1 C CCC 12 ? ? 138.26 110.50 27.76 1.10 Y 19 1 "O4'" D C 23 ? ? "C1'" D C 23 ? ? N1 D C 23 ? ? 114.07 108.50 5.57 0.70 N 20 1 "O4'" D C 27 ? ? "C1'" D C 27 ? ? N1 D C 27 ? ? 113.76 108.50 5.26 0.70 N 21 1 "C3'" D G 45 ? ? "O3'" D G 45 ? ? P D A 46 ? ? 127.16 119.70 7.46 1.20 Y 22 1 "C1'" D A 46 ? ? "O4'" D A 46 ? ? "C4'" D A 46 ? ? 104.20 109.70 -5.50 0.70 N 23 1 "O4'" D A 46 ? ? "C1'" D A 46 ? ? N9 D A 46 ? ? 113.81 108.50 5.31 0.70 N 24 1 "O4'" D C 64 ? ? "C1'" D C 64 ? ? N1 D C 64 ? ? 113.94 108.50 5.44 0.70 N 25 1 "O4'" D U 68 ? ? "C1'" D U 68 ? ? N1 D U 68 ? ? 113.09 108.50 4.59 0.70 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A GTP 1 A GTP 1 ? G "GUANOSINE-5'-TRIPHOSPHATE" 2 A CCC 12 A CCC 12 ? C ? 3 C GTP 1 C GTP 1 ? G "GUANOSINE-5'-TRIPHOSPHATE" 4 C CCC 12 C CCC 12 ? C ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -4.6568 -5.1670 21.8928 0.0066 0.0175 -0.1531 0.1264 -0.0147 -0.0120 0.1286 3.1654 1.3698 0.6120 0.0912 1.0077 0.0370 -0.0614 0.0244 0.1284 0.1793 -0.2971 0.5101 -0.4377 0.1812 'X-RAY DIFFRACTION' 2 ? refined -5.8730 -8.1621 4.4252 0.1042 -0.0200 -0.0552 0.0715 -0.0001 0.0135 0.0303 0.1424 0.6310 0.0107 -0.0880 -0.2591 0.0796 0.0579 -0.1376 -0.0460 -0.0105 0.0154 0.0719 -0.0215 0.0552 'X-RAY DIFFRACTION' 3 ? refined 7.3295 -31.4163 2.7715 -0.0336 -0.1177 -0.0878 0.0493 -0.0168 0.0102 0.4107 0.7607 2.4711 -0.1816 0.6636 0.3872 0.1956 -0.1075 -0.0881 -0.1527 0.0124 -0.0414 0.2873 0.4174 0.0296 'X-RAY DIFFRACTION' 4 ? refined 7.1801 -28.3558 20.7168 0.2150 0.0606 -0.0522 0.0130 -0.0174 -0.0009 0.0737 0.0648 1.7607 0.0510 0.3346 0.3159 -0.0154 -0.0342 0.0496 -0.0650 0.0199 0.0220 -0.0418 0.0223 -0.1704 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 12 ? A 1 A 12 'X-RAY DIFFRACTION' ? 2 2 B 1 B 57 ? B 13 B 69 'X-RAY DIFFRACTION' ? 3 3 C 1 C 12 ? C 1 C 12 'X-RAY DIFFRACTION' ? 4 4 D 1 D 57 ? D 13 D 69 'X-RAY DIFFRACTION' ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CCC PC P N S 73 CCC O1C O N N 74 CCC O2C O N N 75 CCC P P N N 76 CCC OP1 O N N 77 CCC OP2 O N N 78 CCC OP3 O N N 79 CCC "O5'" O N N 80 CCC "C5'" C N N 81 CCC "C4'" C N R 82 CCC "O4'" O N N 83 CCC "C3'" C N R 84 CCC "O3'" O N N 85 CCC "C2'" C N R 86 CCC "O2'" O N N 87 CCC "C1'" C N R 88 CCC N1 N N N 89 CCC C2 C N N 90 CCC O2 O N N 91 CCC N3 N N N 92 CCC C4 C N N 93 CCC N4 N N N 94 CCC C5 C N N 95 CCC C6 C N N 96 CCC HOC2 H N N 97 CCC HOP2 H N N 98 CCC HOP3 H N N 99 CCC "H5'" H N N 100 CCC "H5''" H N N 101 CCC "H4'" H N N 102 CCC "H3'" H N N 103 CCC "H2'" H N N 104 CCC "H1'" H N N 105 CCC H41 H N N 106 CCC H42 H N N 107 CCC H5 H N N 108 CCC H6 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 GTP PG P N N 148 GTP O1G O N N 149 GTP O2G O N N 150 GTP O3G O N N 151 GTP O3B O N N 152 GTP PB P N N 153 GTP O1B O N N 154 GTP O2B O N N 155 GTP O3A O N N 156 GTP PA P N N 157 GTP O1A O N N 158 GTP O2A O N N 159 GTP "O5'" O N N 160 GTP "C5'" C N N 161 GTP "C4'" C N R 162 GTP "O4'" O N N 163 GTP "C3'" C N S 164 GTP "O3'" O N N 165 GTP "C2'" C N R 166 GTP "O2'" O N N 167 GTP "C1'" C N R 168 GTP N9 N Y N 169 GTP C8 C Y N 170 GTP N7 N Y N 171 GTP C5 C Y N 172 GTP C6 C N N 173 GTP O6 O N N 174 GTP N1 N N N 175 GTP C2 C N N 176 GTP N2 N N N 177 GTP N3 N N N 178 GTP C4 C Y N 179 GTP HOG2 H N N 180 GTP HOG3 H N N 181 GTP HOB2 H N N 182 GTP HOA2 H N N 183 GTP "H5'" H N N 184 GTP "H5''" H N N 185 GTP "H4'" H N N 186 GTP "H3'" H N N 187 GTP "HO3'" H N N 188 GTP "H2'" H N N 189 GTP "HO2'" H N N 190 GTP "H1'" H N N 191 GTP H8 H N N 192 GTP HN1 H N N 193 GTP HN21 H N N 194 GTP HN22 H N N 195 HOH O O N N 196 HOH H1 H N N 197 HOH H2 H N N 198 MG MG MG N N 199 U OP3 O N N 200 U P P N N 201 U OP1 O N N 202 U OP2 O N N 203 U "O5'" O N N 204 U "C5'" C N N 205 U "C4'" C N R 206 U "O4'" O N N 207 U "C3'" C N S 208 U "O3'" O N N 209 U "C2'" C N R 210 U "O2'" O N N 211 U "C1'" C N R 212 U N1 N N N 213 U C2 C N N 214 U O2 O N N 215 U N3 N N N 216 U C4 C N N 217 U O4 O N N 218 U C5 C N N 219 U C6 C N N 220 U HOP3 H N N 221 U HOP2 H N N 222 U "H5'" H N N 223 U "H5''" H N N 224 U "H4'" H N N 225 U "H3'" H N N 226 U "HO3'" H N N 227 U "H2'" H N N 228 U "HO2'" H N N 229 U "H1'" H N N 230 U H3 H N N 231 U H5 H N N 232 U H6 H N N 233 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CCC PC O1C doub N N 76 CCC PC O2C sing N N 77 CCC PC "O3'" sing N N 78 CCC PC "O2'" sing N N 79 CCC O2C HOC2 sing N N 80 CCC P OP1 doub N N 81 CCC P OP2 sing N N 82 CCC P OP3 sing N N 83 CCC P "O5'" sing N N 84 CCC OP2 HOP2 sing N N 85 CCC OP3 HOP3 sing N N 86 CCC "O5'" "C5'" sing N N 87 CCC "C5'" "C4'" sing N N 88 CCC "C5'" "H5'" sing N N 89 CCC "C5'" "H5''" sing N N 90 CCC "C4'" "O4'" sing N N 91 CCC "C4'" "C3'" sing N N 92 CCC "C4'" "H4'" sing N N 93 CCC "O4'" "C1'" sing N N 94 CCC "C3'" "O3'" sing N N 95 CCC "C3'" "C2'" sing N N 96 CCC "C3'" "H3'" sing N N 97 CCC "C2'" "O2'" sing N N 98 CCC "C2'" "C1'" sing N N 99 CCC "C2'" "H2'" sing N N 100 CCC "C1'" N1 sing N N 101 CCC "C1'" "H1'" sing N N 102 CCC N1 C2 sing N N 103 CCC N1 C6 sing N N 104 CCC C2 O2 doub N N 105 CCC C2 N3 sing N N 106 CCC N3 C4 doub N N 107 CCC C4 N4 sing N N 108 CCC C4 C5 sing N N 109 CCC N4 H41 sing N N 110 CCC N4 H42 sing N N 111 CCC C5 C6 doub N N 112 CCC C5 H5 sing N N 113 CCC C6 H6 sing N N 114 G OP3 P sing N N 115 G OP3 HOP3 sing N N 116 G P OP1 doub N N 117 G P OP2 sing N N 118 G P "O5'" sing N N 119 G OP2 HOP2 sing N N 120 G "O5'" "C5'" sing N N 121 G "C5'" "C4'" sing N N 122 G "C5'" "H5'" sing N N 123 G "C5'" "H5''" sing N N 124 G "C4'" "O4'" sing N N 125 G "C4'" "C3'" sing N N 126 G "C4'" "H4'" sing N N 127 G "O4'" "C1'" sing N N 128 G "C3'" "O3'" sing N N 129 G "C3'" "C2'" sing N N 130 G "C3'" "H3'" sing N N 131 G "O3'" "HO3'" sing N N 132 G "C2'" "O2'" sing N N 133 G "C2'" "C1'" sing N N 134 G "C2'" "H2'" sing N N 135 G "O2'" "HO2'" sing N N 136 G "C1'" N9 sing N N 137 G "C1'" "H1'" sing N N 138 G N9 C8 sing Y N 139 G N9 C4 sing Y N 140 G C8 N7 doub Y N 141 G C8 H8 sing N N 142 G N7 C5 sing Y N 143 G C5 C6 sing N N 144 G C5 C4 doub Y N 145 G C6 O6 doub N N 146 G C6 N1 sing N N 147 G N1 C2 sing N N 148 G N1 H1 sing N N 149 G C2 N2 sing N N 150 G C2 N3 doub N N 151 G N2 H21 sing N N 152 G N2 H22 sing N N 153 G N3 C4 sing N N 154 GTP PG O1G doub N N 155 GTP PG O2G sing N N 156 GTP PG O3G sing N N 157 GTP PG O3B sing N N 158 GTP O2G HOG2 sing N N 159 GTP O3G HOG3 sing N N 160 GTP O3B PB sing N N 161 GTP PB O1B doub N N 162 GTP PB O2B sing N N 163 GTP PB O3A sing N N 164 GTP O2B HOB2 sing N N 165 GTP O3A PA sing N N 166 GTP PA O1A doub N N 167 GTP PA O2A sing N N 168 GTP PA "O5'" sing N N 169 GTP O2A HOA2 sing N N 170 GTP "O5'" "C5'" sing N N 171 GTP "C5'" "C4'" sing N N 172 GTP "C5'" "H5'" sing N N 173 GTP "C5'" "H5''" sing N N 174 GTP "C4'" "O4'" sing N N 175 GTP "C4'" "C3'" sing N N 176 GTP "C4'" "H4'" sing N N 177 GTP "O4'" "C1'" sing N N 178 GTP "C3'" "O3'" sing N N 179 GTP "C3'" "C2'" sing N N 180 GTP "C3'" "H3'" sing N N 181 GTP "O3'" "HO3'" sing N N 182 GTP "C2'" "O2'" sing N N 183 GTP "C2'" "C1'" sing N N 184 GTP "C2'" "H2'" sing N N 185 GTP "O2'" "HO2'" sing N N 186 GTP "C1'" N9 sing N N 187 GTP "C1'" "H1'" sing N N 188 GTP N9 C8 sing Y N 189 GTP N9 C4 sing Y N 190 GTP C8 N7 doub Y N 191 GTP C8 H8 sing N N 192 GTP N7 C5 sing Y N 193 GTP C5 C6 sing N N 194 GTP C5 C4 doub Y N 195 GTP C6 O6 doub N N 196 GTP C6 N1 sing N N 197 GTP N1 C2 sing N N 198 GTP N1 HN1 sing N N 199 GTP C2 N2 sing N N 200 GTP C2 N3 doub N N 201 GTP N2 HN21 sing N N 202 GTP N2 HN22 sing N N 203 GTP N3 C4 sing N N 204 HOH O H1 sing N N 205 HOH O H2 sing N N 206 U OP3 P sing N N 207 U OP3 HOP3 sing N N 208 U P OP1 doub N N 209 U P OP2 sing N N 210 U P "O5'" sing N N 211 U OP2 HOP2 sing N N 212 U "O5'" "C5'" sing N N 213 U "C5'" "C4'" sing N N 214 U "C5'" "H5'" sing N N 215 U "C5'" "H5''" sing N N 216 U "C4'" "O4'" sing N N 217 U "C4'" "C3'" sing N N 218 U "C4'" "H4'" sing N N 219 U "O4'" "C1'" sing N N 220 U "C3'" "O3'" sing N N 221 U "C3'" "C2'" sing N N 222 U "C3'" "H3'" sing N N 223 U "O3'" "HO3'" sing N N 224 U "C2'" "O2'" sing N N 225 U "C2'" "C1'" sing N N 226 U "C2'" "H2'" sing N N 227 U "O2'" "HO2'" sing N N 228 U "C1'" N1 sing N N 229 U "C1'" "H1'" sing N N 230 U N1 C2 sing N N 231 U N1 C6 sing N N 232 U C2 O2 doub N N 233 U C2 N3 sing N N 234 U N3 C4 sing N N 235 U N3 H3 sing N N 236 U C4 O4 doub N N 237 U C4 C5 sing N N 238 U C5 C6 doub N N 239 U C5 H5 sing N N 240 U C6 H6 sing N N 241 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2QUW 'double helix' 2QUW 'a-form double helix' 2QUW 'hairpin loop' 2QUW 'mismatched base pair' 2QUW 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A GTP 1 1_555 B C 52 1_555 -0.145 -0.163 -0.100 -10.770 -12.436 0.889 1 A_GTP1:C64_B A 1 ? B 64 ? 19 1 1 A G 2 1_555 B C 51 1_555 0.275 -0.128 -0.065 -9.370 -7.454 1.094 2 A_G2:C63_B A 2 ? B 63 ? 19 1 1 A G 3 1_555 B C 50 1_555 -0.302 -0.031 0.336 -0.192 -5.757 4.450 3 A_G3:C62_B A 3 ? B 62 ? 19 1 1 A A 4 1_555 B U 49 1_555 0.224 -0.105 0.573 8.162 -8.658 0.685 4 A_A4:U61_B A 4 ? B 61 ? 20 1 1 A G 5 1_555 B C 48 1_555 -0.041 -0.333 0.321 6.623 -12.533 -4.268 5 A_G5:C60_B A 5 ? B 60 ? 19 1 1 A C 6 1_555 B G 47 1_555 -0.063 -0.194 -0.116 2.413 -17.359 -3.193 6 A_C6:G59_B A 6 ? B 59 ? 19 1 1 A C 7 1_555 B G 46 1_555 0.075 0.107 -0.296 6.572 -12.515 -1.926 7 A_C7:G58_B A 7 ? B 58 ? 19 1 1 A C 8 1_555 B G 45 1_555 -0.418 0.142 0.142 -3.326 -7.760 2.287 8 A_C8:G57_B A 8 ? B 57 ? 19 1 1 A U 9 1_555 B A 44 1_555 -0.674 -0.304 0.080 3.755 -9.097 -0.023 9 A_U9:A56_B A 9 ? B 56 ? 20 1 1 A G 10 1_555 B C 43 1_555 0.074 -0.188 0.051 -5.107 -12.907 1.807 10 A_G10:C55_B A 10 ? B 55 ? 19 1 1 A U 11 1_555 B A 42 1_555 -0.073 -0.109 0.694 -9.182 -3.184 -0.261 11 A_U11:A54_B A 11 ? B 54 ? 20 1 1 B G 22 1_555 B A 41 1_555 4.212 3.374 0.294 -41.512 -40.980 83.832 12 B_G34:A53_B B 34 ? B 53 ? ? ? 1 A CCC 12 1_555 B A 40 1_555 6.172 -3.194 -1.184 21.261 -1.907 -38.981 13 A_CCC12:A52_B A 12 ? B 52 ? ? ? 1 B A 26 1_555 B A 39 1_555 -6.576 -0.843 0.567 -10.694 3.281 34.527 14 B_A38:A51_B B 38 ? B 51 ? ? ? 1 B G 27 1_555 B C 38 1_555 -0.877 -0.185 0.189 4.036 -1.127 9.898 15 B_G39:C50_B B 39 ? B 50 ? 19 1 1 B U 28 1_555 B A 37 1_555 0.339 -0.037 -0.132 8.069 -10.352 0.843 16 B_U40:A49_B B 40 ? B 49 ? 20 1 1 B C 29 1_555 B G 36 1_555 0.666 0.068 -0.162 10.155 -5.502 3.202 17 B_C41:G48_B B 41 ? B 48 ? 19 1 1 B C 30 1_555 B G 35 1_555 0.637 -0.192 -0.392 1.493 -6.028 2.191 18 B_C42:G47_B B 42 ? B 47 ? 19 1 1 B G 8 1_555 B U 9 1_555 7.685 2.297 -0.210 3.706 8.058 12.856 19 B_G20:U21_B B 20 ? B 21 ? ? ? 1 B U 12 1_555 B A 34 1_555 -0.327 -0.119 0.201 -12.453 0.308 4.900 20 B_U24:A46_B B 24 ? B 46 ? 20 1 1 B A 6 1_555 B U 14 1_555 0.065 0.087 -0.099 -17.517 -9.234 3.807 21 B_A18:U26_B B 18 ? B 26 ? 20 1 1 B G 5 1_555 B C 15 1_555 -0.239 -0.037 -0.399 -14.579 -18.263 3.927 22 B_G17:C27_B B 17 ? B 27 ? 19 1 1 B G 4 1_555 B C 16 1_555 -0.267 -0.131 0.024 -1.848 -13.122 -1.031 23 B_G16:C28_B B 16 ? B 28 ? 19 1 1 B C 3 1_555 B G 17 1_555 0.039 -0.050 -0.069 6.800 -14.593 -0.770 24 B_C15:G29_B B 15 ? B 29 ? 19 1 1 B C 2 1_555 B G 18 1_555 0.161 -0.121 0.078 6.226 -11.250 -0.856 25 B_C14:G30_B B 14 ? B 30 ? 19 1 1 B A 1 1_555 B U 19 1_555 -0.241 -0.162 -0.106 -2.727 -15.714 7.136 26 B_A13:U31_B B 13 ? B 31 ? 20 1 1 B C 20 1_555 B G 25 1_555 0.477 -0.243 -0.498 12.047 0.682 -3.456 27 B_C32:G37_B B 32 ? B 37 ? 19 1 1 C GTP 1 1_555 D C 52 1_555 -0.382 -0.323 -0.336 -13.435 -10.005 0.527 28 C_GTP1:C64_D C 1 ? D 64 ? 19 1 1 C G 2 1_555 D C 51 1_555 0.008 -0.272 -0.081 -11.112 -5.723 -0.589 29 C_G2:C63_D C 2 ? D 63 ? 19 1 1 C G 3 1_555 D C 50 1_555 0.113 -0.220 0.010 -4.656 -9.598 -0.315 30 C_G3:C62_D C 3 ? D 62 ? 19 1 1 C A 4 1_555 D U 49 1_555 0.238 -0.096 -0.167 -1.493 -9.179 7.087 31 C_A4:U61_D C 4 ? D 61 ? 20 1 1 C G 5 1_555 D C 48 1_555 -0.315 -0.213 0.149 -3.967 -11.638 0.664 32 C_G5:C60_D C 5 ? D 60 ? 19 1 1 C C 6 1_555 D G 47 1_555 0.112 -0.151 -0.027 -1.189 -1.880 -0.345 33 C_C6:G59_D C 6 ? D 59 ? 19 1 1 C C 7 1_555 D G 46 1_555 0.198 -0.139 -0.522 7.908 -9.940 -4.038 34 C_C7:G58_D C 7 ? D 58 ? 19 1 1 C C 8 1_555 D G 45 1_555 0.136 -0.110 -0.189 3.332 -5.329 6.921 35 C_C8:G57_D C 8 ? D 57 ? 19 1 1 C U 9 1_555 D A 44 1_555 -0.245 -0.229 -0.372 7.627 -13.829 7.350 36 C_U9:A56_D C 9 ? D 56 ? 20 1 1 C G 10 1_555 D C 43 1_555 -0.514 -0.103 -0.058 -9.412 -16.389 5.013 37 C_G10:C55_D C 10 ? D 55 ? 19 1 1 C U 11 1_555 D A 42 1_555 0.180 -0.242 0.831 -5.827 -7.185 -0.797 38 C_U11:A54_D C 11 ? D 54 ? 20 1 1 D G 22 1_555 D A 41 1_555 3.754 3.772 0.795 -45.158 -43.117 80.535 39 D_G34:A53_D D 34 ? D 53 ? ? ? 1 C CCC 12 1_555 D A 40 1_555 5.839 -2.944 -0.766 16.351 6.648 -42.994 40 C_CCC12:A52_D C 12 ? D 52 ? ? ? 1 D A 26 1_555 D A 39 1_555 -6.201 -0.593 0.492 -2.382 -13.344 51.807 41 D_A38:A51_D D 38 ? D 51 ? ? 5 1 D G 27 1_555 D C 38 1_555 -0.828 0.154 -0.377 -2.118 -16.009 11.044 42 D_G39:C50_D D 39 ? D 50 ? ? 1 1 D U 28 1_555 D A 37 1_555 -0.238 -0.115 -0.631 5.704 -5.793 -0.314 43 D_U40:A49_D D 40 ? D 49 ? 20 1 1 D C 29 1_555 D G 36 1_555 0.773 -0.165 -0.303 2.010 -3.262 0.797 44 D_C41:G48_D D 41 ? D 48 ? 19 1 1 D C 30 1_555 D G 35 1_555 0.679 -0.433 -0.311 1.680 -5.204 -1.441 45 D_C42:G47_D D 42 ? D 47 ? 19 1 1 D U 12 1_555 D A 34 1_555 -0.445 -0.051 0.731 -23.969 2.124 -2.994 46 D_U24:A46_D D 24 ? D 46 ? 20 1 1 D A 6 1_555 D U 14 1_555 -0.068 -0.031 -0.143 -8.917 -13.670 2.053 47 D_A18:U26_D D 18 ? D 26 ? 20 1 1 D G 5 1_555 D C 15 1_555 -0.060 -0.106 0.108 -5.445 -13.539 -0.053 48 D_G17:C27_D D 17 ? D 27 ? 19 1 1 D G 4 1_555 D C 16 1_555 -0.113 -0.154 -0.187 -5.032 -10.658 2.931 49 D_G16:C28_D D 16 ? D 28 ? 19 1 1 D C 3 1_555 D G 17 1_555 -0.183 -0.006 -0.179 6.428 -12.726 0.755 50 D_C15:G29_D D 15 ? D 29 ? 19 1 1 D C 2 1_555 D G 18 1_555 0.186 -0.152 -0.209 8.602 -17.589 -3.419 51 D_C14:G30_D D 14 ? D 30 ? 19 1 1 D A 1 1_555 D U 19 1_555 -0.190 -0.332 -0.014 2.085 -12.792 -1.242 52 D_A13:U31_D D 13 ? D 31 ? 20 1 1 D C 20 1_555 D G 25 1_555 0.424 -0.398 -0.104 7.225 -1.721 -7.135 53 D_C32:G37_D D 32 ? D 37 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A GTP 1 1_555 B C 52 1_555 A G 2 1_555 B C 51 1_555 -0.241 -1.566 3.154 0.561 8.022 35.118 -3.575 0.462 2.737 13.084 -0.914 35.999 1 AA_GTP1G2:C63C64_BB A 1 ? B 64 ? A 2 ? B 63 ? 1 A G 2 1_555 B C 51 1_555 A G 3 1_555 B C 50 1_555 0.997 -2.090 3.008 -0.507 2.121 22.097 -6.136 -2.759 2.774 5.515 1.319 22.203 2 AA_G2G3:C62C63_BB A 2 ? B 63 ? A 3 ? B 62 ? 1 A G 3 1_555 B C 50 1_555 A A 4 1_555 B U 49 1_555 -0.734 -2.532 2.942 -2.667 -1.917 28.899 -4.650 0.915 3.154 -3.825 5.321 29.081 3 AA_G3A4:U61C62_BB A 3 ? B 62 ? A 4 ? B 61 ? 1 A A 4 1_555 B U 49 1_555 A G 5 1_555 B C 48 1_555 -0.489 -1.884 3.058 -0.426 10.204 32.819 -4.555 0.772 2.389 17.537 0.732 34.329 4 AA_A4G5:C60U61_BB A 4 ? B 61 ? A 5 ? B 60 ? 1 A G 5 1_555 B C 48 1_555 A C 6 1_555 B G 47 1_555 -0.281 -1.698 3.277 2.375 7.759 29.595 -4.640 0.969 2.724 14.841 -4.542 30.663 5 AA_G5C6:G59C60_BB A 5 ? B 60 ? A 6 ? B 59 ? 1 A C 6 1_555 B G 47 1_555 A C 7 1_555 B G 46 1_555 0.331 -1.708 3.185 -0.682 7.726 33.690 -3.971 -0.654 2.731 13.115 1.157 34.545 6 AA_C6C7:G58G59_BB A 6 ? B 59 ? A 7 ? B 58 ? 1 A C 7 1_555 B G 46 1_555 A C 8 1_555 B G 45 1_555 -0.243 -1.962 3.360 -3.686 13.453 29.476 -5.636 -0.151 2.285 24.768 6.786 32.543 7 AA_C7C8:G57G58_BB A 7 ? B 58 ? A 8 ? B 57 ? 1 A C 8 1_555 B G 45 1_555 A U 9 1_555 B A 44 1_555 0.176 -1.339 3.095 -0.939 5.826 28.819 -3.769 -0.529 2.769 11.553 1.862 29.405 8 AA_C8U9:A56G57_BB A 8 ? B 57 ? A 9 ? B 56 ? 1 A U 9 1_555 B A 44 1_555 A G 10 1_555 B C 43 1_555 0.233 -1.327 3.457 1.578 12.400 35.317 -3.693 -0.157 2.854 19.692 -2.507 37.397 9 AA_U9G10:C55A56_BB A 9 ? B 56 ? A 10 ? B 55 ? 1 A G 10 1_555 B C 43 1_555 A U 11 1_555 B A 42 1_555 -0.373 -1.519 3.488 -3.713 9.801 27.387 -5.117 -0.062 2.814 19.805 7.502 29.288 10 AA_G10U11:A54C55_BB A 10 ? B 55 ? A 11 ? B 54 ? 1 A U 11 1_555 B A 42 1_555 B G 22 1_555 B A 41 1_555 -1.060 2.490 3.236 -0.445 -21.536 86.184 2.208 0.752 2.690 -15.556 0.321 88.320 11 AB_U11G34:A53A54_BB A 11 ? B 54 ? B 34 ? B 53 ? 1 B G 22 1_555 B A 41 1_555 A CCC 12 1_555 B A 40 1_555 -0.363 -4.050 1.552 26.022 30.842 -16.468 1.885 2.534 3.671 -52.514 44.306 -43.454 12 BA_G34CCC12:A52A53_BB B 34 ? B 53 ? A 12 ? B 52 ? 1 A CCC 12 1_555 B A 40 1_555 B A 26 1_555 B A 39 1_555 1.714 -0.082 4.069 -3.881 2.775 30.409 -0.812 -4.149 3.803 5.250 7.343 30.772 13 AB_CCC12A38:A51A52_BB A 12 ? B 52 ? B 38 ? B 51 ? 1 B A 26 1_555 B A 39 1_555 B G 27 1_555 B C 38 1_555 -1.395 -0.184 3.046 -1.746 6.783 50.062 -0.665 1.519 3.042 7.971 2.051 50.518 14 BB_A38G39:C50A51_BB B 38 ? B 51 ? B 39 ? B 50 ? 1 B G 27 1_555 B C 38 1_555 B U 28 1_555 B A 37 1_555 -1.415 -1.562 3.125 2.058 10.660 28.247 -4.850 3.072 2.291 20.892 -4.034 30.222 15 BB_G39U40:A49C50_BB B 39 ? B 50 ? B 40 ? B 49 ? 1 B U 28 1_555 B A 37 1_555 B C 29 1_555 B G 36 1_555 0.510 -2.013 3.325 -0.218 5.537 29.529 -4.977 -1.027 2.904 10.745 0.424 30.033 16 BB_U40C41:G48A49_BB B 40 ? B 49 ? B 41 ? B 48 ? 1 B C 29 1_555 B G 36 1_555 B C 30 1_555 B G 35 1_555 0.163 -2.320 3.514 2.720 4.548 30.382 -5.272 0.238 3.144 8.597 -5.141 30.830 17 BB_C41C42:G47G48_BB B 41 ? B 48 ? B 42 ? B 47 ? 1 B U 12 1_555 B A 34 1_555 B A 6 1_555 B U 14 1_555 4.033 0.407 -3.475 -8.126 6.864 -135.125 -0.174 2.234 -3.364 -3.711 -4.394 -135.329 18 BB_U24A18:U26A46_BB B 24 ? B 46 ? B 18 ? B 26 ? 1 B A 6 1_555 B U 14 1_555 B G 5 1_555 B C 15 1_555 -0.222 1.621 -3.306 0.171 -4.538 -32.459 -3.637 -0.422 -3.056 8.069 0.304 -32.766 19 BB_A18G17:C27U26_BB B 18 ? B 26 ? B 17 ? B 27 ? 1 B G 5 1_555 B C 15 1_555 B G 4 1_555 B C 16 1_555 -0.309 1.873 -3.600 -3.060 -12.167 -32.109 -5.076 -0.043 -2.747 21.022 -5.288 -34.412 20 BB_G17G16:C28C27_BB B 17 ? B 27 ? B 16 ? B 28 ? 1 B G 4 1_555 B C 16 1_555 B C 3 1_555 B G 17 1_555 -0.180 1.616 -3.342 1.107 -14.946 -28.480 -5.351 -0.505 -2.230 28.058 2.079 -32.110 21 BB_G16C15:G29C28_BB B 16 ? B 28 ? B 15 ? B 29 ? 1 B C 3 1_555 B G 17 1_555 B C 2 1_555 B G 18 1_555 0.127 1.359 -3.290 -1.311 -5.785 -32.275 -3.370 0.443 -3.001 10.297 -2.334 -32.801 22 BB_C15C14:G30G29_BB B 15 ? B 29 ? B 14 ? B 30 ? 1 B C 2 1_555 B G 18 1_555 B A 1 1_555 B U 19 1_555 0.617 0.956 -3.124 2.825 -10.299 -31.876 -3.209 0.642 -2.736 18.127 4.973 -33.573 23 BB_C14A13:U31G30_BB B 14 ? B 30 ? B 13 ? B 31 ? 1 B A 1 1_555 B U 19 1_555 B C 20 1_555 B G 25 1_555 -1.344 3.438 -1.485 -161.319 22.801 -152.009 -1.691 -0.470 -1.876 -11.436 -80.907 -175.884 24 BB_A13C32:G37U31_BB B 13 ? B 31 ? B 32 ? B 37 ? 1 C GTP 1 1_555 D C 52 1_555 C G 2 1_555 D C 51 1_555 -0.159 -1.878 3.134 -2.359 10.202 32.322 -4.651 -0.058 2.451 17.755 4.105 33.933 25 CC_GTP1G2:C63C64_DD C 1 ? D 64 ? C 2 ? D 63 ? 1 C G 2 1_555 D C 51 1_555 C G 3 1_555 D C 50 1_555 0.725 -2.262 3.113 2.574 5.429 25.689 -6.252 -0.976 2.646 12.003 -5.690 26.371 26 CC_G2G3:C62C63_DD C 2 ? D 63 ? C 3 ? D 62 ? 1 C G 3 1_555 D C 50 1_555 C A 4 1_555 D U 49 1_555 -0.105 -1.710 3.232 0.889 4.253 31.100 -3.920 0.353 2.974 7.884 -1.648 31.395 27 CC_G3A4:U61C62_DD C 3 ? D 62 ? C 4 ? D 61 ? 1 C A 4 1_555 D U 49 1_555 C G 5 1_555 D C 48 1_555 -0.850 -1.577 3.168 -4.756 9.416 31.451 -4.225 0.754 2.694 16.789 8.480 33.131 28 CC_A4G5:C60U61_DD C 4 ? D 61 ? C 5 ? D 60 ? 1 C G 5 1_555 D C 48 1_555 C C 6 1_555 D G 47 1_555 -0.257 -1.200 3.194 0.694 7.866 32.618 -3.287 0.552 2.831 13.755 -1.214 33.535 29 CC_G5C6:G59C60_DD C 5 ? D 60 ? C 6 ? D 59 ? 1 C C 6 1_555 D G 47 1_555 C C 7 1_555 D G 46 1_555 0.619 -2.111 2.940 5.216 11.315 25.848 -6.281 -0.323 1.949 23.625 -10.891 28.648 30 CC_C6C7:G58G59_DD C 6 ? D 59 ? C 7 ? D 58 ? 1 C C 7 1_555 D G 46 1_555 C C 8 1_555 D G 45 1_555 0.673 -1.982 3.302 -1.197 11.893 32.724 -4.957 -1.290 2.430 20.284 2.041 34.783 31 CC_C7C8:G57G58_DD C 7 ? D 58 ? C 8 ? D 57 ? 1 C C 8 1_555 D G 45 1_555 C U 9 1_555 D A 44 1_555 -0.290 -1.813 3.176 2.066 6.498 27.019 -5.173 1.050 2.647 13.634 -4.335 27.851 32 CC_C8U9:A56G57_DD C 8 ? D 57 ? C 9 ? D 56 ? 1 C U 9 1_555 D A 44 1_555 C G 10 1_555 D C 43 1_555 0.103 -1.576 3.731 -1.798 13.177 30.048 -5.158 -0.506 2.801 23.992 3.275 32.798 33 CC_U9G10:C55A56_DD C 9 ? D 56 ? C 10 ? D 55 ? 1 C G 10 1_555 D C 43 1_555 C U 11 1_555 D A 42 1_555 -0.276 -1.140 3.249 -7.261 11.067 35.117 -3.160 -0.478 2.778 17.589 11.540 37.455 34 CC_G10U11:A54C55_DD C 10 ? D 55 ? C 11 ? D 54 ? 1 C U 11 1_555 D A 42 1_555 D G 22 1_555 D A 41 1_555 -0.897 2.352 3.453 -2.118 -23.501 80.847 2.319 0.623 2.829 -17.783 1.603 83.649 35 CD_U11G34:A53A54_DD C 11 ? D 54 ? D 34 ? D 53 ? 1 D G 22 1_555 D A 41 1_555 C CCC 12 1_555 D A 40 1_555 -0.684 -4.093 1.745 27.780 34.621 -13.481 1.035 2.477 3.976 -57.678 46.281 -46.291 36 DC_G34CCC12:A52A53_DD D 34 ? D 53 ? C 12 ? D 52 ? 1 C CCC 12 1_555 D A 40 1_555 D A 26 1_555 D A 39 1_555 1.802 -0.382 3.737 -8.063 3.916 30.072 -1.493 -4.953 3.089 7.345 15.123 31.350 37 CD_CCC12A38:A51A52_DD C 12 ? D 52 ? D 38 ? D 51 ? 1 D A 26 1_555 D A 39 1_555 D G 27 1_555 D C 38 1_555 -1.991 -0.100 3.355 0.448 5.761 48.813 -0.562 2.429 3.307 6.942 -0.540 49.133 38 DD_A38G39:C50A51_DD D 38 ? D 51 ? D 39 ? D 50 ? 1 D G 27 1_555 D C 38 1_555 D U 28 1_555 D A 37 1_555 -1.277 -1.731 3.025 -0.908 7.790 29.142 -4.697 2.294 2.525 15.139 1.764 30.156 39 DD_G39U40:A49C50_DD D 39 ? D 50 ? D 40 ? D 49 ? 1 D U 28 1_555 D A 37 1_555 D C 29 1_555 D G 36 1_555 0.456 -1.448 3.485 -2.013 9.305 34.679 -3.686 -1.028 2.979 15.258 3.301 35.923 40 DD_U40C41:G48A49_DD D 40 ? D 49 ? D 41 ? D 48 ? 1 D C 29 1_555 D G 36 1_555 D C 30 1_555 D G 35 1_555 -0.038 -2.334 3.397 1.762 5.569 26.835 -6.244 0.499 2.855 11.822 -3.741 27.452 41 DD_C41C42:G47G48_DD D 41 ? D 48 ? D 42 ? D 47 ? 1 D U 12 1_555 D A 34 1_555 D A 6 1_555 D U 14 1_555 4.474 1.248 -3.861 -1.189 5.973 -133.328 -0.632 2.445 -3.868 -3.252 -0.647 -133.398 42 DD_U24A18:U26A46_DD D 24 ? D 46 ? D 18 ? D 26 ? 1 D A 6 1_555 D U 14 1_555 D G 5 1_555 D C 15 1_555 -0.231 1.882 -3.336 -3.338 -3.324 -31.428 -4.043 0.187 -3.133 6.094 -6.120 -31.770 43 DD_A18G17:C27U26_DD D 18 ? D 26 ? D 17 ? D 27 ? 1 D G 5 1_555 D C 15 1_555 D G 4 1_555 D C 16 1_555 -0.534 1.919 -3.248 1.028 -5.755 -32.015 -4.372 -1.122 -2.851 10.327 1.845 -32.531 44 DD_G17G16:C28C27_DD D 17 ? D 27 ? D 16 ? D 28 ? 1 D G 4 1_555 D C 16 1_555 D C 3 1_555 D G 17 1_555 -0.198 1.653 -3.444 -0.004 -14.927 -31.448 -4.932 -0.331 -2.435 25.800 -0.007 -34.730 45 DD_G16C15:G29C28_DD D 16 ? D 28 ? D 15 ? D 29 ? 1 D C 3 1_555 D G 17 1_555 D C 2 1_555 D G 18 1_555 0.412 1.602 -3.335 1.744 -9.848 -27.931 -5.094 0.457 -2.649 19.623 3.476 -29.634 46 DD_C15C14:G30G29_DD D 15 ? D 29 ? D 14 ? D 30 ? 1 D C 2 1_555 D G 18 1_555 D A 1 1_555 D U 19 1_555 0.076 1.041 -3.120 -0.851 -4.751 -34.927 -2.377 0.243 -2.955 7.868 -1.410 -35.249 47 DD_C14A13:U31G30_DD D 14 ? D 30 ? D 13 ? D 31 ? 1 D A 1 1_555 D U 19 1_555 D C 20 1_555 D G 25 1_555 -1.484 3.362 -1.333 -161.124 25.976 -167.298 -1.669 -0.664 -1.544 -12.996 -80.612 -178.149 48 DD_A13C32:G37U31_DD D 13 ? D 31 ? D 32 ? D 37 ? # _atom_sites.entry_id 2QUW _atom_sites.fract_transf_matrix[1][1] 0.035676 _atom_sites.fract_transf_matrix[1][2] -0.009127 _atom_sites.fract_transf_matrix[1][3] -0.003281 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019424 _atom_sites.fract_transf_matrix[2][3] -0.004903 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014478 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_