HEADER RNA 06-AUG-07 2QUW TITLE HAMMERHEAD RIBOZYME G12A MUTANT AFTER CLEAVAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HAMMERHEAD RIBOZYME, CLEAVED FRAGMENT; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: CYCLIC PHOSPHATE AT 3'-END, RESIDUE CCC; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HAMMERHEAD RIBOZYME, CLEAVED FRAGMENT; COMPND 9 CHAIN: B, D; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: FIRST RESIDUE A13G MUTATION SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO T7 RNA POLYMERASE TRANSCRIPTION; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES KEYWDS HAMMERHEAD RIBOZYME, RIBOZYME, CATALYTIC RNA, RIBOZYME-PRODUCT KEYWDS 2 COMPLEX, RNA EXPDTA X-RAY DIFFRACTION AUTHOR Y.I.CHI,W.G.SCOTT,S.H.KIM REVDAT 5 21-FEB-24 2QUW 1 REMARK LINK REVDAT 4 13-JUL-11 2QUW 1 VERSN REVDAT 3 14-APR-09 2QUW 1 JRNL REVDAT 2 24-FEB-09 2QUW 1 VERSN REVDAT 1 15-JUL-08 2QUW 0 JRNL AUTH Y.I.CHI,M.MARTICK,M.LARES,R.KIM,W.G.SCOTT,S.H.KIM JRNL TITL CAPTURING HAMMERHEAD RIBOZYME STRUCTURES IN ACTION BY JRNL TITL 2 MODULATING GENERAL BASE CATALYSIS. JRNL REF PLOS BIOL. V. 6 E234 2008 JRNL REFN ISSN 1544-9173 JRNL PMID 18834200 JRNL DOI 10.1371/JOURNAL.PBIO.0060234 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 17539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1806 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1109 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 2966 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.61000 REMARK 3 B22 (A**2) : -0.81000 REMARK 3 B33 (A**2) : -2.76000 REMARK 3 B12 (A**2) : 1.99000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : -0.07000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.272 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.259 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.613 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3316 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5150 ; 1.762 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 678 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1430 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1189 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2041 ; 0.277 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 101 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4702 ; 1.628 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5150 ; 2.623 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 5 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 12 4 REMARK 3 1 C 2 C 12 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 237 ; 0.530 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 237 ; 0.710 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 13 B 20 4 REMARK 3 1 D 13 D 20 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 B (A): 170 ; 0.290 ; 0.500 REMARK 3 MEDIUM THERMAL 2 B (A**2): 170 ; 0.640 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 26 B 42 4 REMARK 3 1 D 26 D 42 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 B (A): 359 ; 0.250 ; 0.500 REMARK 3 MEDIUM THERMAL 3 B (A**2): 359 ; 0.590 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 45 B 59 4 REMARK 3 1 D 45 D 59 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 B (A): 332 ; 0.410 ; 0.500 REMARK 3 MEDIUM THERMAL 4 B (A**2): 332 ; 0.550 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 60 B 64 4 REMARK 3 1 D 60 D 64 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 5 B (A): 100 ; 0.280 ; 0.500 REMARK 3 MEDIUM THERMAL 5 B (A**2): 100 ; 0.770 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6568 -5.1670 21.8928 REMARK 3 T TENSOR REMARK 3 T11: 0.0066 T22: 0.0175 REMARK 3 T33: -0.1531 T12: 0.1264 REMARK 3 T13: -0.0147 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.1286 L22: 3.1654 REMARK 3 L33: 1.3698 L12: 0.6120 REMARK 3 L13: 0.0912 L23: 1.0077 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: 0.1284 S13: 0.1793 REMARK 3 S21: 0.5101 S22: -0.0614 S23: -0.2971 REMARK 3 S31: -0.4377 S32: 0.1812 S33: 0.0244 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8730 -8.1621 4.4252 REMARK 3 T TENSOR REMARK 3 T11: 0.1042 T22: -0.0200 REMARK 3 T33: -0.0552 T12: 0.0715 REMARK 3 T13: -0.0001 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.0303 L22: 0.1424 REMARK 3 L33: 0.6310 L12: 0.0107 REMARK 3 L13: -0.0880 L23: -0.2591 REMARK 3 S TENSOR REMARK 3 S11: 0.0796 S12: -0.0460 S13: -0.0105 REMARK 3 S21: 0.0719 S22: 0.0579 S23: 0.0154 REMARK 3 S31: -0.0215 S32: 0.0552 S33: -0.1376 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 12 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3295 -31.4163 2.7715 REMARK 3 T TENSOR REMARK 3 T11: -0.0336 T22: -0.1177 REMARK 3 T33: -0.0878 T12: 0.0493 REMARK 3 T13: -0.0168 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.4107 L22: 0.7607 REMARK 3 L33: 2.4711 L12: -0.1816 REMARK 3 L13: 0.6636 L23: 0.3872 REMARK 3 S TENSOR REMARK 3 S11: 0.1956 S12: -0.1527 S13: 0.0124 REMARK 3 S21: 0.2873 S22: -0.1075 S23: -0.0414 REMARK 3 S31: 0.4174 S32: 0.0296 S33: -0.0881 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 13 D 69 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1801 -28.3558 20.7168 REMARK 3 T TENSOR REMARK 3 T11: 0.2150 T22: 0.0606 REMARK 3 T33: -0.0522 T12: 0.0130 REMARK 3 T13: -0.0174 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.0737 L22: 0.0648 REMARK 3 L33: 1.7607 L12: 0.0510 REMARK 3 L13: 0.3346 L23: 0.3159 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: -0.0650 S13: 0.0199 REMARK 3 S21: -0.0418 S22: -0.0342 S23: 0.0220 REMARK 3 S31: 0.0223 S32: -0.1704 S33: 0.0496 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15733 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 19.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 3 O5' - C5' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 CCC A 12 O3' - P - O5' ANGL. DEV. = 13.0 DEGREES REMARK 500 U B 19 C4' - C3' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 U B 19 C3' - C2' - C1' ANGL. DEV. = -8.0 DEGREES REMARK 500 U B 19 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 U B 19 C3' - O3' - P ANGL. DEV. = 9.3 DEGREES REMARK 500 U B 25 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 U B 33 O4' - C4' - C3' ANGL. DEV. = -6.8 DEGREES REMARK 500 U B 33 C4' - C3' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 U B 33 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 A B 49 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 C B 50 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 A B 51 O4' - C1' - N9 ANGL. DEV. = 10.3 DEGREES REMARK 500 G C 2 O3' - P - O5' ANGL. DEV. = 21.6 DEGREES REMARK 500 G C 3 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 U C 11 C3' - O3' - P ANGL. DEV. = 15.0 DEGREES REMARK 500 CCC C 12 O3' - P - OP2 ANGL. DEV. = -23.0 DEGREES REMARK 500 CCC C 12 O3' - P - OP1 ANGL. DEV. = 27.8 DEGREES REMARK 500 C D 23 O4' - C1' - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 C D 27 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 G D 45 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 A D 46 C1' - O4' - C4' ANGL. DEV. = -5.5 DEGREES REMARK 500 A D 46 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 C D 64 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 U D 68 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 70 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 22 N2 REMARK 620 2 G B 22 N3 67.5 REMARK 620 3 C B 23 O4' 86.1 149.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 11 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G D 57 O3' REMARK 620 2 G D 57 O2' 82.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 70 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 71 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 72 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 70 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 71 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GOZ RELATED DB: PDB REMARK 900 RELATED ID: 2QUS RELATED DB: PDB DBREF 2QUW A 1 12 PDB 2QUW 2QUW 1 12 DBREF 2QUW C 1 12 PDB 2QUW 2QUW 1 12 DBREF 2QUW B 13 69 PDB 2QUW 2QUW 13 69 DBREF 2QUW D 13 69 PDB 2QUW 2QUW 13 69 SEQRES 1 A 12 GTP G G A G C C C U G U CCC SEQRES 1 B 57 A C C G G A U G U G C U U SEQRES 2 B 57 U C C G G U C U G A U G A SEQRES 3 B 57 G U C C G U G A G G A C A SEQRES 4 B 57 A A A C A G G G C U C C C SEQRES 5 B 57 G A A U U SEQRES 1 C 12 GTP G G A G C C C U G U CCC SEQRES 1 D 57 A C C G G A U G U G C U U SEQRES 2 D 57 U C C G G U C U G A U G A SEQRES 3 D 57 G U C C G U G A G G A C A SEQRES 4 D 57 A A A C A G G G C U C C C SEQRES 5 D 57 G A A U U MODRES 2QUW GTP A 1 G GUANOSINE-5'-TRIPHOSPHATE MODRES 2QUW CCC A 12 C MODRES 2QUW GTP C 1 G GUANOSINE-5'-TRIPHOSPHATE MODRES 2QUW CCC C 12 C HET GTP A 1 32 HET CCC A 12 23 HET GTP C 1 32 HET CCC C 12 23 HET MG A 13 1 HET MG B 1 1 HET MG B 2 1 HET MG B 4 1 HET MG B 6 1 HET MG B 7 1 HET MG B 10 1 HET MG B 70 1 HET MG B 71 1 HET MG B 72 1 HET MG C 13 1 HET MG C 14 1 HET MG D 3 1 HET MG D 11 1 HET MG D 12 1 HET MG D 70 1 HET MG D 71 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 GTP 2(C10 H16 N5 O14 P3) FORMUL 1 CCC 2(C9 H13 N3 O10 P2) FORMUL 5 MG 17(MG 2+) FORMUL 22 HOH *51(H2 O) LINK O3' GTP A 1 P G A 2 1555 1555 1.59 LINK O3' U A 11 P CCC A 12 1555 1555 1.60 LINK O3' GTP C 1 P G C 2 1555 1555 1.62 LINK O3' U C 11 P CCC C 12 1555 1555 1.59 LINK MG MG B 1 O HOH B 78 1555 1555 2.33 LINK MG MG B 6 OP2 A B 38 1555 1555 2.18 LINK N2 G B 22 MG MG B 70 1555 1555 2.23 LINK N3 G B 22 MG MG B 70 1555 1555 1.94 LINK O4' C B 23 MG MG B 70 1555 1555 2.18 LINK N7 G B 57 MG MG B 71 1555 1555 2.42 LINK OP2 C C 6 MG MG C 14 1555 1555 2.49 LINK MG MG D 11 O3' G D 57 1555 1555 2.33 LINK MG MG D 11 O2' G D 57 1555 1555 2.17 SITE 1 AC1 2 CCC A 12 C B 14 SITE 1 AC2 1 HOH B 78 SITE 1 AC3 3 G B 22 C B 23 G B 45 SITE 1 AC4 4 A B 38 G B 39 A B 51 A B 52 SITE 1 AC5 1 A B 38 SITE 1 AC6 4 G A 10 U A 11 G B 34 C B 55 SITE 1 AC7 2 A B 66 A D 18 SITE 1 AC8 3 G B 22 C B 23 U B 24 SITE 1 AC9 2 A B 56 G B 57 SITE 1 BC1 3 C B 28 G B 29 GTP C 1 SITE 1 BC2 2 G C 5 C C 6 SITE 1 BC3 2 G D 57 G D 58 SITE 1 BC4 4 U D 19 G D 20 G D 22 G D 45 SITE 1 BC5 3 U C 11 G D 34 C D 55 SITE 1 BC6 3 G D 20 G D 22 G D 45 CRYST1 28.030 53.140 72.050 74.24 81.37 75.65 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035676 -0.009127 -0.003281 0.00000 SCALE2 0.000000 0.019424 -0.004903 0.00000 SCALE3 0.000000 0.000000 0.014478 0.00000 CONECT 1 2 3 4 5 CONECT 2 1 CONECT 3 1 CONECT 4 1 CONECT 5 1 6 CONECT 6 5 7 8 9 CONECT 7 6 CONECT 8 6 CONECT 9 6 10 CONECT 10 9 11 12 13 CONECT 11 10 CONECT 12 10 CONECT 13 10 14 CONECT 14 13 15 CONECT 15 14 16 17 CONECT 16 15 21 CONECT 17 15 18 19 CONECT 18 17 33 CONECT 19 17 20 21 CONECT 20 19 CONECT 21 16 19 22 CONECT 22 21 23 32 CONECT 23 22 24 CONECT 24 23 25 CONECT 25 24 26 32 CONECT 26 25 27 28 CONECT 27 26 CONECT 28 26 29 CONECT 29 28 30 31 CONECT 30 29 CONECT 31 29 32 CONECT 32 22 25 31 CONECT 33 18 CONECT 235 250 CONECT 247 248 249 258 260 CONECT 248 247 CONECT 249 247 CONECT 250 235 251 252 253 CONECT 251 250 CONECT 252 250 CONECT 253 250 254 CONECT 254 253 255 CONECT 255 254 256 257 CONECT 256 255 261 CONECT 257 255 258 259 CONECT 258 247 257 CONECT 259 257 260 261 CONECT 260 247 259 CONECT 261 256 259 262 CONECT 262 261 263 269 CONECT 263 262 264 265 CONECT 264 263 CONECT 265 263 266 CONECT 266 265 267 268 CONECT 267 266 CONECT 268 266 269 CONECT 269 262 268 CONECT 481 2978 CONECT 482 2978 CONECT 490 2978 CONECT 800 2975 CONECT 1223 2979 CONECT 1486 1487 1488 1489 1490 CONECT 1487 1486 CONECT 1488 1486 CONECT 1489 1486 CONECT 1490 1486 1491 CONECT 1491 1490 1492 1493 1494 CONECT 1492 1491 CONECT 1493 1491 CONECT 1494 1491 1495 CONECT 1495 1494 1496 1497 1498 CONECT 1496 1495 CONECT 1497 1495 CONECT 1498 1495 1499 CONECT 1499 1498 1500 CONECT 1500 1499 1501 1502 CONECT 1501 1500 1506 CONECT 1502 1500 1503 1504 CONECT 1503 1502 1518 CONECT 1504 1502 1505 1506 CONECT 1505 1504 CONECT 1506 1501 1504 1507 CONECT 1507 1506 1508 1517 CONECT 1508 1507 1509 CONECT 1509 1508 1510 CONECT 1510 1509 1511 1517 CONECT 1511 1510 1512 1513 CONECT 1512 1511 CONECT 1513 1511 1514 CONECT 1514 1513 1515 1516 CONECT 1515 1514 CONECT 1516 1514 1517 CONECT 1517 1507 1510 1516 CONECT 1518 1503 CONECT 1611 2982 CONECT 1720 1735 CONECT 1732 1733 1734 1743 1745 CONECT 1733 1732 CONECT 1734 1732 CONECT 1735 1720 1736 1737 1738 CONECT 1736 1735 CONECT 1737 1735 CONECT 1738 1735 1739 CONECT 1739 1738 1740 CONECT 1740 1739 1741 1742 CONECT 1741 1740 1746 CONECT 1742 1740 1743 1744 CONECT 1743 1732 1742 CONECT 1744 1742 1745 1746 CONECT 1745 1732 1744 CONECT 1746 1741 1744 1747 CONECT 1747 1746 1748 1754 CONECT 1748 1747 1749 1750 CONECT 1749 1748 CONECT 1750 1748 1751 CONECT 1751 1750 1752 1753 CONECT 1752 1751 CONECT 1753 1751 1754 CONECT 1754 1747 1753 CONECT 2702 2984 CONECT 2704 2984 CONECT 2972 2994 CONECT 2975 800 CONECT 2978 481 482 490 CONECT 2979 1223 CONECT 2982 1611 CONECT 2984 2702 2704 CONECT 2994 2972 MASTER 487 0 21 0 0 0 15 6 3034 4 129 12 END