HEADER SIGNALING PROTEIN, HYDROLASE 07-AUG-07 2QUZ TITLE CRYSTAL STRUCTURE OF THE ACTIVATING H-RASK117R MUTANT IN COSTELLO TITLE 2 SYNDROME, BOUND TO MG-GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: G-DOMAIN, RESIDUES 1-166; COMPND 5 SYNONYM: C-H-RAS P21 PROTEIN; TRANSFORMING PROTEIN P21; P21RAS; H- COMPND 6 RAS-1; C-H-RAS; HA-RAS; COMPND 7 EC: 3.6.5.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CK600K; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTACHRASC KEYWDS HYDROLASE, GTPASE PROTEIN, COSTELLO SYNDROME, RAS PROTEIN, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.PARRET,K.SCHEFFZEK REVDAT 5 30-AUG-23 2QUZ 1 REMARK REVDAT 4 20-OCT-21 2QUZ 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 2QUZ 1 VERSN REVDAT 2 22-JUL-08 2QUZ 1 JRNL HEADER REVDAT 1 11-DEC-07 2QUZ 0 JRNL AUTH E.DENAYER,A.PARRET,M.CHMARA,S.SCHUBBERT,A.VOGELS, JRNL AUTH 2 K.DEVRIENDT,J.P.FRIJNS,V.RYBIN,T.J.DE RAVEL,K.SHANNON, JRNL AUTH 3 J.COOLS,K.SCHEFFZEK,E.LEGIUS JRNL TITL MUTATION ANALYSIS IN COSTELLO SYNDROME: FUNCTIONAL AND JRNL TITL 2 STRUCTURAL CHARACTERIZATION OF THE HRAS P.LYS117ARG JRNL TITL 3 MUTATION. JRNL REF HUM.MUTAT. V. 29 232 2008 JRNL REFN ISSN 1059-7794 JRNL PMID 17979197 JRNL DOI 10.1002/HUMU.20616 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1551 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2052 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1324 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1373 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1860 ; 1.337 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 165 ; 5.278 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;38.918 ;24.225 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 240 ;12.922 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.158 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 207 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1037 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 614 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 939 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 109 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.101 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 841 ; 0.878 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1327 ; 1.399 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 601 ; 2.136 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 533 ; 3.456 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 RESIDUES 60-69 ARE POORLY DEFINED. RESIDUE 62 WAS MODELED REMARK 3 STEREOCHEMICALLY. REMARK 4 REMARK 4 2QUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.973 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31034 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 23.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10200 REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.75600 REMARK 200 FOR SHELL : 2.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4Q21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37% PEG3350, 50MM TRISHCL PH8, PH 7.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.05000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.58698 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.76667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.05000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.58698 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.76667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.05000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.58698 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 38.76667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.05000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.58698 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.76667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.05000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.58698 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.76667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.05000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.58698 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.76667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.17396 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 77.53333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 53.17396 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 77.53333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 53.17396 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 77.53333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 53.17396 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 77.53333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 53.17396 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 77.53333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 53.17396 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 77.53333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 320 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 328 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 375 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 115.87 -36.33 REMARK 500 GLU A 62 42.62 38.86 REMARK 500 ARG A 117 35.41 71.90 REMARK 500 ARG A 149 -4.20 82.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 273 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 180 O3B 91.8 REMARK 620 3 HOH A 371 O 85.4 94.3 REMARK 620 4 HOH A 372 O 89.9 85.7 175.3 REMARK 620 5 HOH A 373 O 175.7 91.5 91.7 93.0 REMARK 620 6 HOH A 378 O 88.3 169.4 96.3 83.7 88.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 180 DBREF 2QUZ A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 2QUZ ARG A 117 UNP P01112 LYS 117 ENGINEERED MUTATION SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN ARG SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS HET MG A 273 1 HET GDP A 180 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 FORMUL 4 HOH *111(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 SER A 65 GLY A 75 1 11 HELIX 3 3 ASN A 86 ASP A 105 1 20 HELIX 4 4 GLU A 126 GLY A 138 1 13 HELIX 5 5 GLY A 151 ARG A 164 1 14 SHEET 1 A 6 ASP A 38 ILE A 46 0 SHEET 2 A 6 GLU A 49 ASP A 57 -1 O ILE A 55 N TYR A 40 SHEET 3 A 6 THR A 2 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 A 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 273 1555 1555 2.10 LINK O3B GDP A 180 MG MG A 273 1555 1555 2.04 LINK MG MG A 273 O HOH A 371 1555 1555 2.07 LINK MG MG A 273 O HOH A 372 1555 1555 2.14 LINK MG MG A 273 O HOH A 373 1555 1555 2.08 LINK MG MG A 273 O HOH A 378 1555 1555 2.11 SITE 1 AC1 5 SER A 17 HOH A 371 HOH A 372 HOH A 373 SITE 2 AC1 5 HOH A 378 SITE 1 AC2 22 GLY A 13 GLY A 15 LYS A 16 SER A 17 SITE 2 AC2 22 ALA A 18 PHE A 28 ASP A 30 TYR A 32 SITE 3 AC2 22 ASN A 116 ARG A 117 ASP A 119 LEU A 120 SITE 4 AC2 22 SER A 145 ALA A 146 LYS A 147 HOH A 279 SITE 5 AC2 22 HOH A 298 HOH A 348 HOH A 350 HOH A 371 SITE 6 AC2 22 HOH A 372 HOH A 373 CRYST1 92.100 92.100 116.300 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010858 0.006269 0.000000 0.00000 SCALE2 0.000000 0.012537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008598 0.00000 TER 1325 HIS A 166 HETATM 1326 MG MG A 273 -7.777 16.242 17.764 1.00 14.60 MG HETATM 1327 PB GDP A 180 -7.382 14.106 20.228 1.00 12.82 P HETATM 1328 O1B GDP A 180 -6.265 14.213 21.251 1.00 13.91 O HETATM 1329 O2B GDP A 180 -7.035 13.099 19.145 1.00 16.21 O HETATM 1330 O3B GDP A 180 -7.753 15.465 19.646 1.00 13.12 O HETATM 1331 O3A GDP A 180 -8.634 13.558 21.048 1.00 14.02 O HETATM 1332 PA GDP A 180 -10.188 13.909 20.890 1.00 14.30 P HETATM 1333 O1A GDP A 180 -10.558 13.677 19.439 1.00 15.95 O HETATM 1334 O2A GDP A 180 -10.528 15.270 21.436 1.00 15.80 O HETATM 1335 O5' GDP A 180 -10.867 12.813 21.859 1.00 15.05 O HETATM 1336 C5' GDP A 180 -10.633 11.412 21.648 1.00 15.32 C HETATM 1337 C4' GDP A 180 -11.835 10.661 22.196 1.00 15.72 C HETATM 1338 O4' GDP A 180 -11.861 10.803 23.613 1.00 15.32 O HETATM 1339 C3' GDP A 180 -13.161 11.226 21.723 1.00 17.18 C HETATM 1340 O3' GDP A 180 -14.076 10.135 21.524 1.00 21.11 O HETATM 1341 C2' GDP A 180 -13.643 12.113 22.847 1.00 18.23 C HETATM 1342 O2' GDP A 180 -15.061 12.121 22.976 1.00 24.67 O HETATM 1343 C1' GDP A 180 -13.098 11.374 24.030 1.00 14.37 C HETATM 1344 N9 GDP A 180 -12.765 12.274 25.144 1.00 12.23 N HETATM 1345 C8 GDP A 180 -11.917 13.314 25.093 1.00 12.56 C HETATM 1346 N7 GDP A 180 -11.808 13.896 26.300 1.00 11.99 N HETATM 1347 C5 GDP A 180 -12.595 13.184 27.138 1.00 11.55 C HETATM 1348 C6 GDP A 180 -12.947 13.217 28.570 1.00 12.60 C HETATM 1349 O6 GDP A 180 -12.459 14.077 29.345 1.00 13.27 O HETATM 1350 N1 GDP A 180 -13.808 12.295 29.033 1.00 13.39 N HETATM 1351 C2 GDP A 180 -14.354 11.325 28.260 1.00 11.34 C HETATM 1352 N2 GDP A 180 -15.214 10.450 28.822 1.00 13.99 N HETATM 1353 N3 GDP A 180 -14.086 11.232 26.942 1.00 11.25 N HETATM 1354 C4 GDP A 180 -13.220 12.105 26.380 1.00 12.26 C HETATM 1355 O HOH A 274 -12.795 3.699 31.735 1.00 17.75 O HETATM 1356 O HOH A 275 -0.090 35.268 36.916 1.00 11.71 O HETATM 1357 O HOH A 276 2.381 19.307 40.386 1.00 11.59 O HETATM 1358 O HOH A 277 2.725 0.661 26.479 1.00 10.08 O HETATM 1359 O HOH A 278 -2.729 28.224 38.458 1.00 16.56 O HETATM 1360 O HOH A 279 -17.152 8.798 27.306 1.00 24.30 O HETATM 1361 O HOH A 280 -10.648 24.213 36.123 1.00 15.18 O HETATM 1362 O HOH A 281 6.063 25.152 33.466 1.00 13.79 O HETATM 1363 O HOH A 282 1.083 16.691 19.349 1.00 14.39 O HETATM 1364 O HOH A 283 8.670 25.085 33.843 1.00 22.57 O HETATM 1365 O HOH A 284 -13.304 36.673 30.994 1.00 25.43 O HETATM 1366 O HOH A 285 -12.787 24.219 34.246 1.00 13.34 O HETATM 1367 O HOH A 286 0.316 11.863 25.005 1.00 11.42 O HETATM 1368 O HOH A 287 -15.153 19.304 23.976 1.00 16.66 O HETATM 1369 O HOH A 288 10.095 23.121 31.274 1.00 14.63 O HETATM 1370 O HOH A 289 18.290 25.132 29.408 1.00 36.20 O HETATM 1371 O HOH A 290 -7.509 4.965 26.002 1.00 25.76 O HETATM 1372 O HOH A 291 7.110 13.086 43.202 1.00 38.67 O HETATM 1373 O HOH A 292 -15.012 25.846 34.790 1.00 32.11 O HETATM 1374 O HOH A 293 -0.673 2.506 37.545 1.00 12.83 O HETATM 1375 O HOH A 294 -13.672 32.359 21.700 1.00 18.79 O HETATM 1376 O HOH A 295 -12.793 22.334 37.774 1.00 23.19 O HETATM 1377 O HOH A 296 -8.724 35.182 36.851 1.00 18.72 O HETATM 1378 O HOH A 297 14.313 27.819 18.926 0.50 19.35 O HETATM 1379 O HOH A 298 -8.821 11.228 18.053 1.00 21.04 O HETATM 1380 O HOH A 299 -13.669 34.477 23.398 1.00 21.10 O HETATM 1381 O HOH A 300 0.413 14.019 18.098 1.00 29.51 O HETATM 1382 O HOH A 301 11.987 11.676 33.561 1.00 26.90 O HETATM 1383 O HOH A 302 15.575 17.155 23.492 1.00 24.05 O HETATM 1384 O HOH A 303 12.229 14.293 28.905 1.00 24.36 O HETATM 1385 O HOH A 304 10.390 33.387 37.431 1.00 20.76 O HETATM 1386 O HOH A 305 -18.166 9.907 32.195 1.00 21.46 O HETATM 1387 O HOH A 306 -14.886 14.965 35.938 1.00 24.89 O HETATM 1388 O HOH A 307 10.807 24.423 37.652 1.00 25.91 O HETATM 1389 O HOH A 308 -6.727 29.634 11.338 1.00 41.69 O HETATM 1390 O HOH A 309 -8.033 19.023 38.293 1.00 25.56 O HETATM 1391 O HOH A 310 14.518 18.380 32.127 1.00 34.15 O HETATM 1392 O HOH A 311 -5.518 43.835 30.350 1.00 24.34 O HETATM 1393 O HOH A 312 14.191 29.046 24.924 1.00 44.51 O HETATM 1394 O HOH A 313 6.539 34.384 26.420 1.00 35.24 O HETATM 1395 O HOH A 314 13.956 15.926 33.018 1.00 29.20 O HETATM 1396 O HOH A 315 -9.974 6.172 33.888 1.00 17.50 O HETATM 1397 O HOH A 316 5.493 3.317 25.329 1.00 19.51 O HETATM 1398 O HOH A 317 -9.605 37.860 36.636 1.00 18.40 O HETATM 1399 O HOH A 318 13.090 16.413 30.569 1.00 20.18 O HETATM 1400 O HOH A 319 -3.526 14.019 17.496 1.00 23.13 O HETATM 1401 O HOH A 320 17.767 22.359 19.351 0.50 15.02 O HETATM 1402 O HOH A 321 2.198 9.727 20.341 1.00 20.05 O HETATM 1403 O HOH A 322 -19.588 19.932 29.322 1.00 34.65 O HETATM 1404 O HOH A 323 -8.530 21.609 38.875 1.00 17.34 O HETATM 1405 O HOH A 324 -21.296 19.238 27.091 1.00 25.03 O HETATM 1406 O HOH A 325 4.522 17.163 40.630 1.00 16.21 O HETATM 1407 O HOH A 326 -12.878 40.139 27.979 1.00 40.72 O HETATM 1408 O HOH A 327 10.654 23.201 33.870 1.00 19.91 O HETATM 1409 O HOH A 328 1.631 26.564 38.765 0.50 12.07 O HETATM 1410 O HOH A 329 2.762 36.902 25.853 1.00 32.05 O HETATM 1411 O HOH A 330 0.485 40.812 23.421 1.00 24.18 O HETATM 1412 O HOH A 331 -9.732 7.879 22.034 1.00 31.43 O HETATM 1413 O HOH A 332 -0.415 9.322 18.379 1.00 28.05 O HETATM 1414 O HOH A 333 -8.473 28.342 36.655 1.00 32.77 O HETATM 1415 O HOH A 334 7.896 31.085 26.605 1.00 27.69 O HETATM 1416 O HOH A 335 1.381 40.547 31.023 1.00 29.12 O HETATM 1417 O HOH A 336 4.141 11.337 43.833 1.00 35.30 O HETATM 1418 O HOH A 337 5.857 18.263 21.552 1.00 30.15 O HETATM 1419 O HOH A 338 -17.680 10.760 36.144 1.00 31.20 O HETATM 1420 O HOH A 339 -8.867 43.749 32.205 1.00 30.31 O HETATM 1421 O HOH A 340 16.249 13.579 22.954 1.00 29.28 O HETATM 1422 O HOH A 341 14.880 15.665 37.000 1.00 37.34 O HETATM 1423 O HOH A 342 -3.477 2.818 37.781 1.00 22.54 O HETATM 1424 O HOH A 343 6.202 8.081 43.921 1.00 37.88 O HETATM 1425 O HOH A 344 11.150 13.573 20.560 1.00 29.72 O HETATM 1426 O HOH A 345 -11.330 15.653 7.030 1.00 47.26 O HETATM 1427 O HOH A 346 3.979 13.698 44.842 1.00 35.61 O HETATM 1428 O HOH A 347 -5.684 20.034 9.522 1.00 35.84 O HETATM 1429 O HOH A 348 -11.879 12.117 17.793 1.00 29.89 O HETATM 1430 O HOH A 349 -19.562 10.001 26.860 1.00 44.55 O HETATM 1431 O HOH A 350 -14.650 8.797 25.715 1.00 45.76 O HETATM 1432 O HOH A 351 -22.467 9.595 15.770 1.00 38.78 O HETATM 1433 O HOH A 352 12.198 28.530 26.693 1.00 36.08 O HETATM 1434 O HOH A 353 -14.719 31.338 24.072 1.00 33.84 O HETATM 1435 O HOH A 354 8.213 32.671 21.771 1.00 42.52 O HETATM 1436 O HOH A 355 17.653 14.996 26.610 1.00 35.50 O HETATM 1437 O HOH A 356 3.877 17.304 18.573 1.00 26.36 O HETATM 1438 O HOH A 357 -19.249 15.089 18.112 1.00 43.67 O HETATM 1439 O HOH A 358 -10.990 29.163 36.409 1.00 33.41 O HETATM 1440 O HOH A 359 -10.362 21.807 18.326 1.00 30.24 O HETATM 1441 O HOH A 360 -0.706 24.090 8.214 1.00 55.65 O HETATM 1442 O HOH A 361 7.079 7.850 22.319 1.00 41.90 O HETATM 1443 O HOH A 362 -8.286 21.477 15.661 1.00 25.21 O HETATM 1444 O HOH A 363 0.109 6.497 21.406 1.00 33.69 O HETATM 1445 O HOH A 364 5.240 16.987 15.789 1.00 45.03 O HETATM 1446 O HOH A 365 -6.487 4.060 41.100 1.00 31.02 O HETATM 1447 O HOH A 366 -20.784 16.959 29.225 1.00 38.92 O HETATM 1448 O HOH A 367 5.913 19.569 14.504 1.00 42.34 O HETATM 1449 O HOH A 368 10.744 11.526 30.969 1.00 14.08 O HETATM 1450 O HOH A 369 -7.932 8.869 41.277 1.00 42.72 O HETATM 1451 O HOH A 370 -4.341 7.834 41.473 1.00 17.03 O HETATM 1452 O HOH A 371 -6.127 17.445 18.074 1.00 14.13 O HETATM 1453 O HOH A 372 -9.588 15.128 17.500 1.00 15.06 O HETATM 1454 O HOH A 373 -6.591 14.693 17.050 1.00 15.12 O HETATM 1455 O HOH A 374 -0.042 24.470 39.288 1.00 17.75 O HETATM 1456 O HOH A 375 -0.026 -0.012 26.442 0.33 18.18 O HETATM 1457 O HOH A 376 5.869 5.371 38.948 1.00 26.68 O HETATM 1458 O HOH A 377 -1.934 8.217 43.056 1.00 17.69 O HETATM 1459 O HOH A 378 -8.127 16.838 15.774 1.00 19.20 O HETATM 1460 O HOH A 379 5.242 26.116 38.796 0.50 9.15 O HETATM 1461 O HOH A 380 -9.461 39.674 38.697 1.00 19.39 O HETATM 1462 O HOH A 381 -1.161 5.765 43.762 1.00 28.01 O HETATM 1463 O HOH A 382 18.784 21.487 21.807 1.00 23.23 O HETATM 1464 O HOH A 383 2.226 23.564 40.334 1.00 30.76 O HETATM 1465 O HOH A 384 17.190 18.787 31.946 1.00 35.81 O CONECT 117 1326 CONECT 1326 117 1330 1452 1453 CONECT 1326 1454 1459 CONECT 1327 1328 1329 1330 1331 CONECT 1328 1327 CONECT 1329 1327 CONECT 1330 1326 1327 CONECT 1331 1327 1332 CONECT 1332 1331 1333 1334 1335 CONECT 1333 1332 CONECT 1334 1332 CONECT 1335 1332 1336 CONECT 1336 1335 1337 CONECT 1337 1336 1338 1339 CONECT 1338 1337 1343 CONECT 1339 1337 1340 1341 CONECT 1340 1339 CONECT 1341 1339 1342 1343 CONECT 1342 1341 CONECT 1343 1338 1341 1344 CONECT 1344 1343 1345 1354 CONECT 1345 1344 1346 CONECT 1346 1345 1347 CONECT 1347 1346 1348 1354 CONECT 1348 1347 1349 1350 CONECT 1349 1348 CONECT 1350 1348 1351 CONECT 1351 1350 1352 1353 CONECT 1352 1351 CONECT 1353 1351 1354 CONECT 1354 1344 1347 1353 CONECT 1452 1326 CONECT 1453 1326 CONECT 1454 1326 CONECT 1459 1326 MASTER 349 0 2 5 6 0 8 6 1464 1 35 13 END