data_2QV7 # _entry.id 2QV7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QV7 RCSB RCSB044096 WWPDB D_1000044096 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2QVL _pdbx_database_related.details ;'Apo form' ; _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2QV7 _pdbx_database_status.recvd_initial_deposition_date 2007-08-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Miller, D.J.' 1 'Jerga, A.' 2 'Rock, C.O.' 3 'White, S.W.' 4 # _citation.id primary _citation.title 'Analysis of the Staphylococcus aureus DgkB Structure Reveals a Common Catalytic Mechanism for the Soluble Diacylglycerol Kinases.' _citation.journal_abbrev Structure _citation.journal_volume 16 _citation.page_first 1036 _citation.page_last 1046 _citation.year 2008 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18611377 _citation.pdbx_database_id_DOI 10.1016/j.str.2008.03.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Miller, D.J.' 1 primary 'Jerga, A.' 2 primary 'Rock, C.O.' 3 primary 'White, S.W.' 4 # _cell.entry_id 2QV7 _cell.length_a 123.760 _cell.length_b 123.760 _cell.length_c 47.680 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QV7 _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Diacylglycerol Kinase DgkB' 37899.238 1 2.7.1.107 ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 4 water nat water 18.015 152 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSSHHHHHHHSSGLVPRGSH(MSE)(MSE)RKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGD ATLEAERA(MSE)HENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIP(MSE)GTVNDFGRALHIPNDI(MSE)GALDV IIEGHSTKVDIGK(MSE)NNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFE(MSE)LPQ(MSE)KAVDLRIEY DGNVFQGEALLFFLGLTNS(MSE)AGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHI(MSE)TLASRGEHTKHPKVIYEK AKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHHSSGLVPRGSHMMRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHEN YDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAA GGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGY FTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIV NEELINNDHVDDNLIEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 SER n 1 13 SER n 1 14 GLY n 1 15 LEU n 1 16 VAL n 1 17 PRO n 1 18 ARG n 1 19 GLY n 1 20 SER n 1 21 HIS n 1 22 MSE n 1 23 MSE n 1 24 ARG n 1 25 LYS n 1 26 ARG n 1 27 ALA n 1 28 ARG n 1 29 ILE n 1 30 ILE n 1 31 TYR n 1 32 ASN n 1 33 PRO n 1 34 THR n 1 35 SER n 1 36 GLY n 1 37 LYS n 1 38 GLU n 1 39 GLN n 1 40 PHE n 1 41 LYS n 1 42 ARG n 1 43 GLU n 1 44 LEU n 1 45 PRO n 1 46 ASP n 1 47 ALA n 1 48 LEU n 1 49 ILE n 1 50 LYS n 1 51 LEU n 1 52 GLU n 1 53 LYS n 1 54 ALA n 1 55 GLY n 1 56 TYR n 1 57 GLU n 1 58 THR n 1 59 SER n 1 60 ALA n 1 61 TYR n 1 62 ALA n 1 63 THR n 1 64 GLU n 1 65 LYS n 1 66 ILE n 1 67 GLY n 1 68 ASP n 1 69 ALA n 1 70 THR n 1 71 LEU n 1 72 GLU n 1 73 ALA n 1 74 GLU n 1 75 ARG n 1 76 ALA n 1 77 MSE n 1 78 HIS n 1 79 GLU n 1 80 ASN n 1 81 TYR n 1 82 ASP n 1 83 VAL n 1 84 LEU n 1 85 ILE n 1 86 ALA n 1 87 ALA n 1 88 GLY n 1 89 GLY n 1 90 ASP n 1 91 GLY n 1 92 THR n 1 93 LEU n 1 94 ASN n 1 95 GLU n 1 96 VAL n 1 97 VAL n 1 98 ASN n 1 99 GLY n 1 100 ILE n 1 101 ALA n 1 102 GLU n 1 103 LYS n 1 104 PRO n 1 105 ASN n 1 106 ARG n 1 107 PRO n 1 108 LYS n 1 109 LEU n 1 110 GLY n 1 111 VAL n 1 112 ILE n 1 113 PRO n 1 114 MSE n 1 115 GLY n 1 116 THR n 1 117 VAL n 1 118 ASN n 1 119 ASP n 1 120 PHE n 1 121 GLY n 1 122 ARG n 1 123 ALA n 1 124 LEU n 1 125 HIS n 1 126 ILE n 1 127 PRO n 1 128 ASN n 1 129 ASP n 1 130 ILE n 1 131 MSE n 1 132 GLY n 1 133 ALA n 1 134 LEU n 1 135 ASP n 1 136 VAL n 1 137 ILE n 1 138 ILE n 1 139 GLU n 1 140 GLY n 1 141 HIS n 1 142 SER n 1 143 THR n 1 144 LYS n 1 145 VAL n 1 146 ASP n 1 147 ILE n 1 148 GLY n 1 149 LYS n 1 150 MSE n 1 151 ASN n 1 152 ASN n 1 153 ARG n 1 154 TYR n 1 155 PHE n 1 156 ILE n 1 157 ASN n 1 158 LEU n 1 159 ALA n 1 160 ALA n 1 161 GLY n 1 162 GLY n 1 163 GLN n 1 164 LEU n 1 165 THR n 1 166 GLN n 1 167 VAL n 1 168 SER n 1 169 TYR n 1 170 GLU n 1 171 THR n 1 172 PRO n 1 173 SER n 1 174 LYS n 1 175 LEU n 1 176 LYS n 1 177 SER n 1 178 ILE n 1 179 VAL n 1 180 GLY n 1 181 PRO n 1 182 PHE n 1 183 ALA n 1 184 TYR n 1 185 TYR n 1 186 ILE n 1 187 LYS n 1 188 GLY n 1 189 PHE n 1 190 GLU n 1 191 MSE n 1 192 LEU n 1 193 PRO n 1 194 GLN n 1 195 MSE n 1 196 LYS n 1 197 ALA n 1 198 VAL n 1 199 ASP n 1 200 LEU n 1 201 ARG n 1 202 ILE n 1 203 GLU n 1 204 TYR n 1 205 ASP n 1 206 GLY n 1 207 ASN n 1 208 VAL n 1 209 PHE n 1 210 GLN n 1 211 GLY n 1 212 GLU n 1 213 ALA n 1 214 LEU n 1 215 LEU n 1 216 PHE n 1 217 PHE n 1 218 LEU n 1 219 GLY n 1 220 LEU n 1 221 THR n 1 222 ASN n 1 223 SER n 1 224 MSE n 1 225 ALA n 1 226 GLY n 1 227 PHE n 1 228 GLU n 1 229 LYS n 1 230 LEU n 1 231 VAL n 1 232 PRO n 1 233 ASP n 1 234 ALA n 1 235 LYS n 1 236 LEU n 1 237 ASP n 1 238 ASP n 1 239 GLY n 1 240 TYR n 1 241 PHE n 1 242 THR n 1 243 LEU n 1 244 ILE n 1 245 ILE n 1 246 VAL n 1 247 GLU n 1 248 LYS n 1 249 SER n 1 250 ASN n 1 251 LEU n 1 252 ALA n 1 253 GLU n 1 254 LEU n 1 255 GLY n 1 256 HIS n 1 257 ILE n 1 258 MSE n 1 259 THR n 1 260 LEU n 1 261 ALA n 1 262 SER n 1 263 ARG n 1 264 GLY n 1 265 GLU n 1 266 HIS n 1 267 THR n 1 268 LYS n 1 269 HIS n 1 270 PRO n 1 271 LYS n 1 272 VAL n 1 273 ILE n 1 274 TYR n 1 275 GLU n 1 276 LYS n 1 277 ALA n 1 278 LYS n 1 279 ALA n 1 280 ILE n 1 281 ASN n 1 282 ILE n 1 283 SER n 1 284 SER n 1 285 PHE n 1 286 THR n 1 287 ASP n 1 288 LEU n 1 289 GLN n 1 290 LEU n 1 291 ASN n 1 292 VAL n 1 293 ASP n 1 294 GLY n 1 295 GLU n 1 296 TYR n 1 297 GLY n 1 298 GLY n 1 299 LYS n 1 300 LEU n 1 301 PRO n 1 302 ALA n 1 303 ASN n 1 304 PHE n 1 305 LEU n 1 306 ASN n 1 307 LEU n 1 308 GLU n 1 309 ARG n 1 310 HIS n 1 311 ILE n 1 312 ASP n 1 313 VAL n 1 314 PHE n 1 315 ALA n 1 316 PRO n 1 317 ASN n 1 318 ASP n 1 319 ILE n 1 320 VAL n 1 321 ASN n 1 322 GLU n 1 323 GLU n 1 324 LEU n 1 325 ILE n 1 326 ASN n 1 327 ASN n 1 328 ASP n 1 329 HIS n 1 330 VAL n 1 331 ASP n 1 332 ASP n 1 333 ASN n 1 334 LEU n 1 335 ILE n 1 336 GLU n 1 337 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SAR1989 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'methionine auxotroph B834' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pAJ015 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6GFF9_STAAR _struct_ref.pdbx_db_accession Q6GFF9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAE KPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPF AYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLAS RGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QV7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 23 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 337 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6GFF9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 315 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 315 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QV7 MSE A 1 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -21 1 1 2QV7 GLY A 2 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -20 2 1 2QV7 SER A 3 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -19 3 1 2QV7 SER A 4 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -18 4 1 2QV7 HIS A 5 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -17 5 1 2QV7 HIS A 6 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -16 6 1 2QV7 HIS A 7 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -15 7 1 2QV7 HIS A 8 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -14 8 1 2QV7 HIS A 9 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -13 9 1 2QV7 HIS A 10 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -12 10 1 2QV7 HIS A 11 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -11 11 1 2QV7 SER A 12 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -10 12 1 2QV7 SER A 13 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -9 13 1 2QV7 GLY A 14 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -8 14 1 2QV7 LEU A 15 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -7 15 1 2QV7 VAL A 16 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -6 16 1 2QV7 PRO A 17 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -5 17 1 2QV7 ARG A 18 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -4 18 1 2QV7 GLY A 19 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -3 19 1 2QV7 SER A 20 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -2 20 1 2QV7 HIS A 21 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' -1 21 1 2QV7 MSE A 22 ? UNP Q6GFF9 ? ? 'EXPRESSION TAG' 0 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QV7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.41 _exptl_crystal.density_percent_sol 48.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details ;drop: 0.1 M Tris pH 8.5, 9% PEG2K MME; well: 0.1 M Tris pH 8.5, 18% PEG2K MME, VAPOR DIFFUSION, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 170 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2007-03-14 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si-220 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2QV7 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 30 _reflns.number_all 17025 _reflns.number_obs 16997 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.128 _reflns.pdbx_netI_over_sigmaI 24.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.431 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy 8.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1667 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QV7 _refine.ls_number_reflns_obs 16069 _refine.ls_number_reflns_all 16997 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.17 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.58 _refine.ls_R_factor_obs 0.20845 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20648 _refine.ls_R_factor_R_free 0.2464 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 857 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.B_iso_mean 34.138 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'Rigid body refinement of DgkB' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.312 _refine.pdbx_overall_ESU_R_Free 0.228 _refine.overall_SU_ML 0.156 _refine.overall_SU_B 10.497 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2324 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 152 _refine_hist.number_atoms_total 2504 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 29.17 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.007 0.022 ? 2393 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.122 1.985 ? 3240 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.887 5.000 ? 301 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.929 25.093 ? 108 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.053 15.000 ? 406 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.523 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.061 0.200 ? 363 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1801 'X-RAY DIFFRACTION' ? r_nbd_refined 0.177 0.200 ? 1050 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.300 0.200 ? 1583 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.107 0.200 ? 183 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.171 0.200 ? 23 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.189 0.200 ? 11 'X-RAY DIFFRACTION' ? r_mcbond_it 0.430 1.500 ? 1542 'X-RAY DIFFRACTION' ? r_mcangle_it 0.676 2.000 ? 2388 'X-RAY DIFFRACTION' ? r_scbond_it 1.093 3.000 ? 953 'X-RAY DIFFRACTION' ? r_scangle_it 1.603 4.500 ? 852 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.number_reflns_R_work 1130 _refine_ls_shell.R_factor_R_work 0.218 _refine_ls_shell.percent_reflns_obs 99.34 _refine_ls_shell.R_factor_R_free 0.285 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 81 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QV7 _struct.title 'Crystal Structure of Diacylglycerol Kinase DgkB in complex with ADP and Mg' _struct.pdbx_descriptor 'Diacylglycerol Kinase DgkB (E.C.2.7.1.107 )' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QV7 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'alpha-beta domain 1, beta sandwich domain 2, Protein-ADP complex, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 39 ? ALA A 54 ? GLN A 17 ALA A 32 1 ? 16 HELX_P HELX_P2 2 GLY A 67 ? MSE A 77 ? GLY A 45 MSE A 55 1 ? 11 HELX_P HELX_P3 3 GLY A 89 ? ALA A 101 ? GLY A 67 ALA A 79 1 ? 13 HELX_P HELX_P4 4 ASN A 118 ? LEU A 124 ? ASN A 96 LEU A 102 1 ? 7 HELX_P HELX_P5 5 ASP A 129 ? GLY A 140 ? ASP A 107 GLY A 118 1 ? 12 HELX_P HELX_P6 6 GLY A 180 ? TYR A 184 ? GLY A 158 TYR A 162 5 ? 5 HELX_P HELX_P7 7 MSE A 191 ? MSE A 195 ? MSE A 169 MSE A 173 5 ? 5 HELX_P HELX_P8 8 ASN A 250 ? SER A 262 ? ASN A 228 SER A 240 1 ? 13 HELX_P HELX_P9 9 ARG A 263 ? GLY A 264 ? ARG A 241 GLY A 242 5 ? 2 HELX_P HELX_P10 10 GLU A 265 ? HIS A 269 ? GLU A 243 HIS A 247 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A LYS 235 O ? ? ? 1_555 B MG . MG ? ? A LYS 213 A MG 501 1_555 ? ? ? ? ? ? ? 2.188 ? metalc2 metalc ? ? A ASP 238 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 216 A MG 501 1_555 ? ? ? ? ? ? ? 2.338 ? metalc3 metalc ? ? A TYR 240 O ? ? ? 1_555 B MG . MG ? ? A TYR 218 A MG 501 1_555 ? ? ? ? ? ? ? 2.239 ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 501 A HOH 582 1_555 ? ? ? ? ? ? ? 2.192 ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 501 A HOH 531 1_555 ? ? ? ? ? ? ? 2.381 ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 501 A HOH 511 1_555 ? ? ? ? ? ? ? 2.264 ? covale1 covale ? ? A HIS 21 C ? ? ? 1_555 A MSE 22 N ? ? A HIS -1 A MSE 0 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A MSE 22 C ? ? ? 1_555 A MSE 23 N ? ? A MSE 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A MSE 23 C ? ? ? 1_555 A ARG 24 N ? ? A MSE 1 A ARG 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A ALA 76 C ? ? ? 1_555 A MSE 77 N ? ? A ALA 54 A MSE 55 1_555 ? ? ? ? ? ? ? 1.334 ? covale5 covale ? ? A MSE 77 C ? ? ? 1_555 A HIS 78 N ? ? A MSE 55 A HIS 56 1_555 ? ? ? ? ? ? ? 1.334 ? covale6 covale ? ? A PRO 113 C ? ? ? 1_555 A MSE 114 N ? ? A PRO 91 A MSE 92 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? A MSE 114 C ? ? ? 1_555 A GLY 115 N ? ? A MSE 92 A GLY 93 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale ? ? A ILE 130 C ? ? ? 1_555 A MSE 131 N ? ? A ILE 108 A MSE 109 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? A MSE 131 C ? ? ? 1_555 A GLY 132 N ? ? A MSE 109 A GLY 110 1_555 ? ? ? ? ? ? ? 1.333 ? covale10 covale ? ? A LYS 149 C ? ? ? 1_555 A MSE 150 N ? ? A LYS 127 A MSE 128 1_555 ? ? ? ? ? ? ? 1.329 ? covale11 covale ? ? A MSE 150 C ? ? ? 1_555 A ASN 151 N ? ? A MSE 128 A ASN 129 1_555 ? ? ? ? ? ? ? 1.330 ? covale12 covale ? ? A GLU 190 C ? ? ? 1_555 A MSE 191 N ? ? A GLU 168 A MSE 169 1_555 ? ? ? ? ? ? ? 1.334 ? covale13 covale ? ? A MSE 191 C ? ? ? 1_555 A LEU 192 N ? ? A MSE 169 A LEU 170 1_555 ? ? ? ? ? ? ? 1.330 ? covale14 covale ? ? A GLN 194 C ? ? ? 1_555 A MSE 195 N ? ? A GLN 172 A MSE 173 1_555 ? ? ? ? ? ? ? 1.329 ? covale15 covale ? ? A MSE 195 C ? ? ? 1_555 A LYS 196 N ? ? A MSE 173 A LYS 174 1_555 ? ? ? ? ? ? ? 1.330 ? covale16 covale ? ? A SER 223 C ? ? ? 1_555 A MSE 224 N ? ? A SER 201 A MSE 202 1_555 ? ? ? ? ? ? ? 1.329 ? covale17 covale ? ? A MSE 224 C ? ? ? 1_555 A ALA 225 N ? ? A MSE 202 A ALA 203 1_555 ? ? ? ? ? ? ? 1.332 ? covale18 covale ? ? A ILE 257 C ? ? ? 1_555 A MSE 258 N ? ? A ILE 235 A MSE 236 1_555 ? ? ? ? ? ? ? 1.332 ? covale19 covale ? ? A MSE 258 C ? ? ? 1_555 A THR 259 N ? ? A MSE 236 A THR 237 1_555 ? ? ? ? ? ? ? 1.330 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 300 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 278 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 301 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 279 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.84 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 9 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel C 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 56 ? ALA A 62 ? TYR A 34 ALA A 40 A 2 LYS A 25 ? TYR A 31 ? LYS A 3 TYR A 9 A 3 VAL A 83 ? GLY A 88 ? VAL A 61 GLY A 66 A 4 LYS A 108 ? PRO A 113 ? LYS A 86 PRO A 91 B 1 ARG A 153 ? PHE A 155 ? ARG A 131 PHE A 133 B 2 SER A 142 ? MSE A 150 ? SER A 120 MSE A 128 B 3 ALA A 302 ? PHE A 314 ? ALA A 280 PHE A 292 B 4 ALA A 279 ? SER A 283 ? ALA A 257 SER A 261 B 5 VAL A 198 ? TYR A 204 ? VAL A 176 TYR A 182 B 6 ASN A 207 ? GLY A 219 ? ASN A 185 GLY A 197 B 7 PHE A 241 ? GLU A 247 ? PHE A 219 GLU A 225 B 8 VAL A 272 ? ALA A 277 ? VAL A 250 ALA A 255 C 1 ARG A 153 ? PHE A 155 ? ARG A 131 PHE A 133 C 2 SER A 142 ? MSE A 150 ? SER A 120 MSE A 128 C 3 ALA A 302 ? PHE A 314 ? ALA A 280 PHE A 292 C 4 ALA A 279 ? SER A 283 ? ALA A 257 SER A 261 C 5 VAL A 198 ? TYR A 204 ? VAL A 176 TYR A 182 C 6 ASN A 207 ? GLY A 219 ? ASN A 185 GLY A 197 C 7 LEU A 158 ? GLY A 162 ? LEU A 136 GLY A 140 C 8 GLN A 289 ? VAL A 292 ? GLN A 267 VAL A 270 C 9 GLU A 295 ? LYS A 299 ? GLU A 273 LYS A 277 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 57 ? O GLU A 35 N LYS A 25 ? N LYS A 3 A 2 3 N ILE A 30 ? N ILE A 8 O ILE A 85 ? O ILE A 63 A 3 4 N ALA A 86 ? N ALA A 64 O GLY A 110 ? O GLY A 88 B 1 2 O ARG A 153 ? O ARG A 131 N MSE A 150 ? N MSE A 128 B 2 3 N THR A 143 ? N THR A 121 O VAL A 313 ? O VAL A 291 B 3 4 O PHE A 304 ? O PHE A 282 N ILE A 280 ? N ILE A 258 B 4 5 O ASN A 281 ? O ASN A 259 N GLU A 203 ? N GLU A 181 B 5 6 N ILE A 202 ? N ILE A 180 O PHE A 209 ? O PHE A 187 B 6 7 N GLY A 219 ? N GLY A 197 O THR A 242 ? O THR A 220 B 7 8 N ILE A 245 ? N ILE A 223 O ILE A 273 ? O ILE A 251 C 1 2 O ARG A 153 ? O ARG A 131 N MSE A 150 ? N MSE A 128 C 2 3 N THR A 143 ? N THR A 121 O VAL A 313 ? O VAL A 291 C 3 4 O PHE A 304 ? O PHE A 282 N ILE A 280 ? N ILE A 258 C 4 5 O ASN A 281 ? O ASN A 259 N GLU A 203 ? N GLU A 181 C 5 6 N ILE A 202 ? N ILE A 180 O PHE A 209 ? O PHE A 187 C 6 7 O LEU A 218 ? O LEU A 196 N ALA A 159 ? N ALA A 137 C 7 8 N ALA A 160 ? N ALA A 138 O ASN A 291 ? O ASN A 269 C 8 9 N VAL A 292 ? N VAL A 270 O GLU A 295 ? O GLU A 273 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A 501' AC2 Software ? ? ? ? 17 'BINDING SITE FOR RESIDUE ADP A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LYS A 235 ? LYS A 213 . ? 1_555 ? 2 AC1 6 ASP A 238 ? ASP A 216 . ? 1_555 ? 3 AC1 6 TYR A 240 ? TYR A 218 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 511 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 531 . ? 1_555 ? 6 AC1 6 HOH D . ? HOH A 582 . ? 1_555 ? 7 AC2 17 ASN A 32 ? ASN A 10 . ? 1_555 ? 8 AC2 17 THR A 34 ? THR A 12 . ? 1_555 ? 9 AC2 17 SER A 35 ? SER A 13 . ? 1_555 ? 10 AC2 17 GLY A 36 ? GLY A 14 . ? 1_555 ? 11 AC2 17 THR A 63 ? THR A 41 . ? 1_555 ? 12 AC2 17 GLU A 64 ? GLU A 42 . ? 1_555 ? 13 AC2 17 LYS A 65 ? LYS A 43 . ? 1_555 ? 14 AC2 17 ILE A 66 ? ILE A 44 . ? 1_555 ? 15 AC2 17 GLY A 88 ? GLY A 66 . ? 1_555 ? 16 AC2 17 GLY A 89 ? GLY A 67 . ? 1_555 ? 17 AC2 17 GLY A 91 ? GLY A 69 . ? 1_555 ? 18 AC2 17 THR A 92 ? THR A 70 . ? 1_555 ? 19 AC2 17 GLU A 95 ? GLU A 73 . ? 1_555 ? 20 AC2 17 GLY A 115 ? GLY A 93 . ? 1_555 ? 21 AC2 17 THR A 116 ? THR A 94 . ? 1_555 ? 22 AC2 17 HOH D . ? HOH A 527 . ? 1_555 ? 23 AC2 17 HOH D . ? HOH A 625 . ? 1_555 ? # _database_PDB_matrix.entry_id 2QV7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2QV7 _atom_sites.fract_transf_matrix[1][1] 0.008080 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008080 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020973 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -21 ? ? ? A . n A 1 2 GLY 2 -20 ? ? ? A . n A 1 3 SER 3 -19 ? ? ? A . n A 1 4 SER 4 -18 ? ? ? A . n A 1 5 HIS 5 -17 ? ? ? A . n A 1 6 HIS 6 -16 ? ? ? A . n A 1 7 HIS 7 -15 ? ? ? A . n A 1 8 HIS 8 -14 ? ? ? A . n A 1 9 HIS 9 -13 ? ? ? A . n A 1 10 HIS 10 -12 ? ? ? A . n A 1 11 HIS 11 -11 ? ? ? A . n A 1 12 SER 12 -10 ? ? ? A . n A 1 13 SER 13 -9 ? ? ? A . n A 1 14 GLY 14 -8 ? ? ? A . n A 1 15 LEU 15 -7 ? ? ? A . n A 1 16 VAL 16 -6 ? ? ? A . n A 1 17 PRO 17 -5 ? ? ? A . n A 1 18 ARG 18 -4 ? ? ? A . n A 1 19 GLY 19 -3 -3 GLY GLY A . n A 1 20 SER 20 -2 -2 SER ALA A . n A 1 21 HIS 21 -1 -1 HIS ALA A . n A 1 22 MSE 22 0 0 MSE ALA A . n A 1 23 MSE 23 1 1 MSE MSE A . n A 1 24 ARG 24 2 2 ARG ARG A . n A 1 25 LYS 25 3 3 LYS LYS A . n A 1 26 ARG 26 4 4 ARG ARG A . n A 1 27 ALA 27 5 5 ALA ALA A . n A 1 28 ARG 28 6 6 ARG ARG A . n A 1 29 ILE 29 7 7 ILE ILE A . n A 1 30 ILE 30 8 8 ILE ILE A . n A 1 31 TYR 31 9 9 TYR TYR A . n A 1 32 ASN 32 10 10 ASN ASN A . n A 1 33 PRO 33 11 11 PRO PRO A . n A 1 34 THR 34 12 12 THR THR A . n A 1 35 SER 35 13 13 SER SER A . n A 1 36 GLY 36 14 14 GLY GLY A . n A 1 37 LYS 37 15 15 LYS LYS A . n A 1 38 GLU 38 16 16 GLU GLU A . n A 1 39 GLN 39 17 17 GLN GLN A . n A 1 40 PHE 40 18 18 PHE PHE A . n A 1 41 LYS 41 19 19 LYS LYS A . n A 1 42 ARG 42 20 20 ARG ARG A . n A 1 43 GLU 43 21 21 GLU GLU A . n A 1 44 LEU 44 22 22 LEU LEU A . n A 1 45 PRO 45 23 23 PRO PRO A . n A 1 46 ASP 46 24 24 ASP ASP A . n A 1 47 ALA 47 25 25 ALA ALA A . n A 1 48 LEU 48 26 26 LEU LEU A . n A 1 49 ILE 49 27 27 ILE ILE A . n A 1 50 LYS 50 28 28 LYS LYS A . n A 1 51 LEU 51 29 29 LEU LEU A . n A 1 52 GLU 52 30 30 GLU GLU A . n A 1 53 LYS 53 31 31 LYS LYS A . n A 1 54 ALA 54 32 32 ALA ALA A . n A 1 55 GLY 55 33 33 GLY GLY A . n A 1 56 TYR 56 34 34 TYR TYR A . n A 1 57 GLU 57 35 35 GLU GLU A . n A 1 58 THR 58 36 36 THR THR A . n A 1 59 SER 59 37 37 SER SER A . n A 1 60 ALA 60 38 38 ALA ALA A . n A 1 61 TYR 61 39 39 TYR TYR A . n A 1 62 ALA 62 40 40 ALA ALA A . n A 1 63 THR 63 41 41 THR THR A . n A 1 64 GLU 64 42 42 GLU GLU A . n A 1 65 LYS 65 43 43 LYS LYS A . n A 1 66 ILE 66 44 44 ILE ILE A . n A 1 67 GLY 67 45 45 GLY GLY A . n A 1 68 ASP 68 46 46 ASP ASP A . n A 1 69 ALA 69 47 47 ALA ALA A . n A 1 70 THR 70 48 48 THR THR A . n A 1 71 LEU 71 49 49 LEU LEU A . n A 1 72 GLU 72 50 50 GLU GLU A . n A 1 73 ALA 73 51 51 ALA ALA A . n A 1 74 GLU 74 52 52 GLU GLU A . n A 1 75 ARG 75 53 53 ARG ARG A . n A 1 76 ALA 76 54 54 ALA ALA A . n A 1 77 MSE 77 55 55 MSE MSE A . n A 1 78 HIS 78 56 56 HIS HIS A . n A 1 79 GLU 79 57 57 GLU GLU A . n A 1 80 ASN 80 58 58 ASN ASN A . n A 1 81 TYR 81 59 59 TYR TYR A . n A 1 82 ASP 82 60 60 ASP ASP A . n A 1 83 VAL 83 61 61 VAL VAL A . n A 1 84 LEU 84 62 62 LEU LEU A . n A 1 85 ILE 85 63 63 ILE ILE A . n A 1 86 ALA 86 64 64 ALA ALA A . n A 1 87 ALA 87 65 65 ALA ALA A . n A 1 88 GLY 88 66 66 GLY GLY A . n A 1 89 GLY 89 67 67 GLY GLY A . n A 1 90 ASP 90 68 68 ASP ASP A . n A 1 91 GLY 91 69 69 GLY GLY A . n A 1 92 THR 92 70 70 THR THR A . n A 1 93 LEU 93 71 71 LEU LEU A . n A 1 94 ASN 94 72 72 ASN ASN A . n A 1 95 GLU 95 73 73 GLU GLU A . n A 1 96 VAL 96 74 74 VAL VAL A . n A 1 97 VAL 97 75 75 VAL VAL A . n A 1 98 ASN 98 76 76 ASN ASN A . n A 1 99 GLY 99 77 77 GLY GLY A . n A 1 100 ILE 100 78 78 ILE ILE A . n A 1 101 ALA 101 79 79 ALA ALA A . n A 1 102 GLU 102 80 80 GLU GLU A . n A 1 103 LYS 103 81 81 LYS LYS A . n A 1 104 PRO 104 82 82 PRO PRO A . n A 1 105 ASN 105 83 83 ASN ASN A . n A 1 106 ARG 106 84 84 ARG ARG A . n A 1 107 PRO 107 85 85 PRO PRO A . n A 1 108 LYS 108 86 86 LYS LYS A . n A 1 109 LEU 109 87 87 LEU LEU A . n A 1 110 GLY 110 88 88 GLY GLY A . n A 1 111 VAL 111 89 89 VAL VAL A . n A 1 112 ILE 112 90 90 ILE ILE A . n A 1 113 PRO 113 91 91 PRO PRO A . n A 1 114 MSE 114 92 92 MSE MSE A . n A 1 115 GLY 115 93 93 GLY GLY A . n A 1 116 THR 116 94 94 THR THR A . n A 1 117 VAL 117 95 95 VAL VAL A . n A 1 118 ASN 118 96 96 ASN ASN A . n A 1 119 ASP 119 97 97 ASP ASP A . n A 1 120 PHE 120 98 98 PHE PHE A . n A 1 121 GLY 121 99 99 GLY GLY A . n A 1 122 ARG 122 100 100 ARG ARG A . n A 1 123 ALA 123 101 101 ALA ALA A . n A 1 124 LEU 124 102 102 LEU LEU A . n A 1 125 HIS 125 103 103 HIS HIS A . n A 1 126 ILE 126 104 104 ILE ILE A . n A 1 127 PRO 127 105 105 PRO PRO A . n A 1 128 ASN 128 106 106 ASN ASN A . n A 1 129 ASP 129 107 107 ASP ASP A . n A 1 130 ILE 130 108 108 ILE ILE A . n A 1 131 MSE 131 109 109 MSE MSE A . n A 1 132 GLY 132 110 110 GLY GLY A . n A 1 133 ALA 133 111 111 ALA ALA A . n A 1 134 LEU 134 112 112 LEU LEU A . n A 1 135 ASP 135 113 113 ASP ASP A . n A 1 136 VAL 136 114 114 VAL VAL A . n A 1 137 ILE 137 115 115 ILE ILE A . n A 1 138 ILE 138 116 116 ILE ILE A . n A 1 139 GLU 139 117 117 GLU GLU A . n A 1 140 GLY 140 118 118 GLY GLY A . n A 1 141 HIS 141 119 119 HIS HIS A . n A 1 142 SER 142 120 120 SER SER A . n A 1 143 THR 143 121 121 THR THR A . n A 1 144 LYS 144 122 122 LYS LYS A . n A 1 145 VAL 145 123 123 VAL VAL A . n A 1 146 ASP 146 124 124 ASP ASP A . n A 1 147 ILE 147 125 125 ILE ILE A . n A 1 148 GLY 148 126 126 GLY GLY A . n A 1 149 LYS 149 127 127 LYS LYS A . n A 1 150 MSE 150 128 128 MSE MSE A . n A 1 151 ASN 151 129 129 ASN ASN A . n A 1 152 ASN 152 130 130 ASN ASN A . n A 1 153 ARG 153 131 131 ARG ARG A . n A 1 154 TYR 154 132 132 TYR TYR A . n A 1 155 PHE 155 133 133 PHE PHE A . n A 1 156 ILE 156 134 134 ILE ILE A . n A 1 157 ASN 157 135 135 ASN ASN A . n A 1 158 LEU 158 136 136 LEU LEU A . n A 1 159 ALA 159 137 137 ALA ALA A . n A 1 160 ALA 160 138 138 ALA ALA A . n A 1 161 GLY 161 139 139 GLY GLY A . n A 1 162 GLY 162 140 140 GLY GLY A . n A 1 163 GLN 163 141 141 GLN GLN A . n A 1 164 LEU 164 142 142 LEU LEU A . n A 1 165 THR 165 143 143 THR THR A . n A 1 166 GLN 166 144 144 GLN ALA A . n A 1 167 VAL 167 145 ? ? ? A . n A 1 168 SER 168 146 ? ? ? A . n A 1 169 TYR 169 147 ? ? ? A . n A 1 170 GLU 170 148 ? ? ? A . n A 1 171 THR 171 149 ? ? ? A . n A 1 172 PRO 172 150 ? ? ? A . n A 1 173 SER 173 151 ? ? ? A . n A 1 174 LYS 174 152 ? ? ? A . n A 1 175 LEU 175 153 ? ? ? A . n A 1 176 LYS 176 154 ? ? ? A . n A 1 177 SER 177 155 ? ? ? A . n A 1 178 ILE 178 156 ? ? ? A . n A 1 179 VAL 179 157 ? ? ? A . n A 1 180 GLY 180 158 158 GLY GLY A . n A 1 181 PRO 181 159 159 PRO PRO A . n A 1 182 PHE 182 160 160 PHE PHE A . n A 1 183 ALA 183 161 161 ALA ALA A . n A 1 184 TYR 184 162 162 TYR ALA A . n A 1 185 TYR 185 163 163 TYR TYR A . n A 1 186 ILE 186 164 164 ILE ILE A . n A 1 187 LYS 187 165 165 LYS ALA A . n A 1 188 GLY 188 166 166 GLY GLY A . n A 1 189 PHE 189 167 167 PHE PHE A . n A 1 190 GLU 190 168 168 GLU GLU A . n A 1 191 MSE 191 169 169 MSE MSE A . n A 1 192 LEU 192 170 170 LEU LEU A . n A 1 193 PRO 193 171 171 PRO PRO A . n A 1 194 GLN 194 172 172 GLN GLN A . n A 1 195 MSE 195 173 173 MSE MSE A . n A 1 196 LYS 196 174 174 LYS LYS A . n A 1 197 ALA 197 175 175 ALA ALA A . n A 1 198 VAL 198 176 176 VAL VAL A . n A 1 199 ASP 199 177 177 ASP ASP A . n A 1 200 LEU 200 178 178 LEU LEU A . n A 1 201 ARG 201 179 179 ARG ARG A . n A 1 202 ILE 202 180 180 ILE ILE A . n A 1 203 GLU 203 181 181 GLU GLU A . n A 1 204 TYR 204 182 182 TYR TYR A . n A 1 205 ASP 205 183 183 ASP ASP A . n A 1 206 GLY 206 184 184 GLY GLY A . n A 1 207 ASN 207 185 185 ASN ASN A . n A 1 208 VAL 208 186 186 VAL VAL A . n A 1 209 PHE 209 187 187 PHE PHE A . n A 1 210 GLN 210 188 188 GLN GLN A . n A 1 211 GLY 211 189 189 GLY GLY A . n A 1 212 GLU 212 190 190 GLU GLU A . n A 1 213 ALA 213 191 191 ALA ALA A . n A 1 214 LEU 214 192 192 LEU LEU A . n A 1 215 LEU 215 193 193 LEU LEU A . n A 1 216 PHE 216 194 194 PHE PHE A . n A 1 217 PHE 217 195 195 PHE PHE A . n A 1 218 LEU 218 196 196 LEU LEU A . n A 1 219 GLY 219 197 197 GLY GLY A . n A 1 220 LEU 220 198 198 LEU LEU A . n A 1 221 THR 221 199 199 THR THR A . n A 1 222 ASN 222 200 200 ASN ASN A . n A 1 223 SER 223 201 201 SER SER A . n A 1 224 MSE 224 202 202 MSE MSE A . n A 1 225 ALA 225 203 203 ALA ALA A . n A 1 226 GLY 226 204 204 GLY GLY A . n A 1 227 PHE 227 205 205 PHE PHE A . n A 1 228 GLU 228 206 206 GLU GLU A . n A 1 229 LYS 229 207 207 LYS LYS A . n A 1 230 LEU 230 208 208 LEU LEU A . n A 1 231 VAL 231 209 209 VAL VAL A . n A 1 232 PRO 232 210 210 PRO PRO A . n A 1 233 ASP 233 211 211 ASP ASP A . n A 1 234 ALA 234 212 212 ALA ALA A . n A 1 235 LYS 235 213 213 LYS LYS A . n A 1 236 LEU 236 214 214 LEU LEU A . n A 1 237 ASP 237 215 215 ASP ASP A . n A 1 238 ASP 238 216 216 ASP ASP A . n A 1 239 GLY 239 217 217 GLY GLY A . n A 1 240 TYR 240 218 218 TYR TYR A . n A 1 241 PHE 241 219 219 PHE PHE A . n A 1 242 THR 242 220 220 THR THR A . n A 1 243 LEU 243 221 221 LEU LEU A . n A 1 244 ILE 244 222 222 ILE ILE A . n A 1 245 ILE 245 223 223 ILE ILE A . n A 1 246 VAL 246 224 224 VAL VAL A . n A 1 247 GLU 247 225 225 GLU GLU A . n A 1 248 LYS 248 226 226 LYS LYS A . n A 1 249 SER 249 227 227 SER SER A . n A 1 250 ASN 250 228 228 ASN ASN A . n A 1 251 LEU 251 229 229 LEU LEU A . n A 1 252 ALA 252 230 230 ALA ALA A . n A 1 253 GLU 253 231 231 GLU GLU A . n A 1 254 LEU 254 232 232 LEU LEU A . n A 1 255 GLY 255 233 233 GLY GLY A . n A 1 256 HIS 256 234 234 HIS HIS A . n A 1 257 ILE 257 235 235 ILE ILE A . n A 1 258 MSE 258 236 236 MSE MSE A . n A 1 259 THR 259 237 237 THR THR A . n A 1 260 LEU 260 238 238 LEU LEU A . n A 1 261 ALA 261 239 239 ALA ALA A . n A 1 262 SER 262 240 240 SER SER A . n A 1 263 ARG 263 241 241 ARG ARG A . n A 1 264 GLY 264 242 242 GLY GLY A . n A 1 265 GLU 265 243 243 GLU GLU A . n A 1 266 HIS 266 244 244 HIS HIS A . n A 1 267 THR 267 245 245 THR THR A . n A 1 268 LYS 268 246 246 LYS LYS A . n A 1 269 HIS 269 247 247 HIS HIS A . n A 1 270 PRO 270 248 248 PRO PRO A . n A 1 271 LYS 271 249 249 LYS LYS A . n A 1 272 VAL 272 250 250 VAL VAL A . n A 1 273 ILE 273 251 251 ILE ILE A . n A 1 274 TYR 274 252 252 TYR TYR A . n A 1 275 GLU 275 253 253 GLU GLU A . n A 1 276 LYS 276 254 254 LYS LYS A . n A 1 277 ALA 277 255 255 ALA ALA A . n A 1 278 LYS 278 256 256 LYS LYS A . n A 1 279 ALA 279 257 257 ALA ALA A . n A 1 280 ILE 280 258 258 ILE ILE A . n A 1 281 ASN 281 259 259 ASN ASN A . n A 1 282 ILE 282 260 260 ILE ILE A . n A 1 283 SER 283 261 261 SER SER A . n A 1 284 SER 284 262 262 SER SER A . n A 1 285 PHE 285 263 263 PHE PHE A . n A 1 286 THR 286 264 264 THR THR A . n A 1 287 ASP 287 265 265 ASP ASP A . n A 1 288 LEU 288 266 266 LEU LEU A . n A 1 289 GLN 289 267 267 GLN ALA A . n A 1 290 LEU 290 268 268 LEU LEU A . n A 1 291 ASN 291 269 269 ASN ASN A . n A 1 292 VAL 292 270 270 VAL VAL A . n A 1 293 ASP 293 271 271 ASP ASP A . n A 1 294 GLY 294 272 272 GLY GLY A . n A 1 295 GLU 295 273 273 GLU GLU A . n A 1 296 TYR 296 274 274 TYR TYR A . n A 1 297 GLY 297 275 275 GLY GLY A . n A 1 298 GLY 298 276 276 GLY GLY A . n A 1 299 LYS 299 277 277 LYS LYS A . n A 1 300 LEU 300 278 278 LEU LEU A . n A 1 301 PRO 301 279 279 PRO PRO A . n A 1 302 ALA 302 280 280 ALA ALA A . n A 1 303 ASN 303 281 281 ASN ASN A . n A 1 304 PHE 304 282 282 PHE PHE A . n A 1 305 LEU 305 283 283 LEU LEU A . n A 1 306 ASN 306 284 284 ASN ASN A . n A 1 307 LEU 307 285 285 LEU LEU A . n A 1 308 GLU 308 286 286 GLU GLU A . n A 1 309 ARG 309 287 287 ARG ARG A . n A 1 310 HIS 310 288 288 HIS HIS A . n A 1 311 ILE 311 289 289 ILE ILE A . n A 1 312 ASP 312 290 290 ASP ASP A . n A 1 313 VAL 313 291 291 VAL VAL A . n A 1 314 PHE 314 292 292 PHE PHE A . n A 1 315 ALA 315 293 293 ALA ALA A . n A 1 316 PRO 316 294 294 PRO PRO A . n A 1 317 ASN 317 295 295 ASN ASN A . n A 1 318 ASP 318 296 296 ASP ASP A . n A 1 319 ILE 319 297 297 ILE ILE A . n A 1 320 VAL 320 298 298 VAL VAL A . n A 1 321 ASN 321 299 299 ASN ASN A . n A 1 322 GLU 322 300 300 GLU GLU A . n A 1 323 GLU 323 301 301 GLU GLU A . n A 1 324 LEU 324 302 302 LEU LEU A . n A 1 325 ILE 325 303 303 ILE ILE A . n A 1 326 ASN 326 304 304 ASN ASN A . n A 1 327 ASN 327 305 305 ASN ASN A . n A 1 328 ASP 328 306 306 ASP ASP A . n A 1 329 HIS 329 307 307 HIS HIS A . n A 1 330 VAL 330 308 308 VAL VAL A . n A 1 331 ASP 331 309 309 ASP ALA A . n A 1 332 ASP 332 310 310 ASP ALA A . n A 1 333 ASN 333 311 311 ASN ASN A . n A 1 334 LEU 334 312 312 LEU LEU A . n A 1 335 ILE 335 313 ? ? ? A . n A 1 336 GLU 336 314 ? ? ? A . n A 1 337 GLU 337 315 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 501 501 MG MG A . C 3 ADP 1 500 500 ADP ADP A . D 4 HOH 1 502 1 HOH WAT A . D 4 HOH 2 503 2 HOH WAT A . D 4 HOH 3 504 3 HOH WAT A . D 4 HOH 4 505 4 HOH WAT A . D 4 HOH 5 506 5 HOH WAT A . D 4 HOH 6 507 6 HOH WAT A . D 4 HOH 7 508 7 HOH WAT A . D 4 HOH 8 509 8 HOH WAT A . D 4 HOH 9 510 9 HOH WAT A . D 4 HOH 10 511 10 HOH WAT A . D 4 HOH 11 512 11 HOH WAT A . D 4 HOH 12 513 12 HOH WAT A . D 4 HOH 13 514 13 HOH WAT A . D 4 HOH 14 515 14 HOH WAT A . D 4 HOH 15 516 15 HOH WAT A . D 4 HOH 16 517 16 HOH WAT A . D 4 HOH 17 518 17 HOH WAT A . D 4 HOH 18 519 18 HOH WAT A . D 4 HOH 19 520 19 HOH WAT A . D 4 HOH 20 521 20 HOH WAT A . D 4 HOH 21 522 21 HOH WAT A . D 4 HOH 22 523 22 HOH WAT A . D 4 HOH 23 524 23 HOH WAT A . D 4 HOH 24 525 24 HOH WAT A . D 4 HOH 25 526 25 HOH WAT A . D 4 HOH 26 527 26 HOH WAT A . D 4 HOH 27 528 27 HOH WAT A . D 4 HOH 28 529 28 HOH WAT A . D 4 HOH 29 530 29 HOH WAT A . D 4 HOH 30 531 30 HOH WAT A . D 4 HOH 31 532 31 HOH WAT A . D 4 HOH 32 533 32 HOH WAT A . D 4 HOH 33 534 33 HOH WAT A . D 4 HOH 34 535 34 HOH WAT A . D 4 HOH 35 536 35 HOH WAT A . D 4 HOH 36 537 36 HOH WAT A . D 4 HOH 37 538 37 HOH WAT A . D 4 HOH 38 539 38 HOH WAT A . D 4 HOH 39 540 39 HOH WAT A . D 4 HOH 40 541 40 HOH WAT A . D 4 HOH 41 542 41 HOH WAT A . D 4 HOH 42 543 42 HOH WAT A . D 4 HOH 43 544 43 HOH WAT A . D 4 HOH 44 545 44 HOH WAT A . D 4 HOH 45 546 45 HOH WAT A . D 4 HOH 46 547 46 HOH WAT A . D 4 HOH 47 548 47 HOH WAT A . D 4 HOH 48 549 48 HOH WAT A . D 4 HOH 49 550 49 HOH WAT A . D 4 HOH 50 551 50 HOH WAT A . D 4 HOH 51 552 51 HOH WAT A . D 4 HOH 52 553 52 HOH WAT A . D 4 HOH 53 554 53 HOH WAT A . D 4 HOH 54 555 54 HOH WAT A . D 4 HOH 55 556 55 HOH WAT A . D 4 HOH 56 557 56 HOH WAT A . D 4 HOH 57 558 57 HOH WAT A . D 4 HOH 58 559 58 HOH WAT A . D 4 HOH 59 560 59 HOH WAT A . D 4 HOH 60 561 60 HOH WAT A . D 4 HOH 61 562 61 HOH WAT A . D 4 HOH 62 563 62 HOH WAT A . D 4 HOH 63 564 63 HOH WAT A . D 4 HOH 64 565 64 HOH WAT A . D 4 HOH 65 566 65 HOH WAT A . D 4 HOH 66 567 66 HOH WAT A . D 4 HOH 67 568 67 HOH WAT A . D 4 HOH 68 569 68 HOH WAT A . D 4 HOH 69 570 69 HOH WAT A . D 4 HOH 70 571 70 HOH WAT A . D 4 HOH 71 572 71 HOH WAT A . D 4 HOH 72 573 72 HOH WAT A . D 4 HOH 73 574 73 HOH WAT A . D 4 HOH 74 575 74 HOH WAT A . D 4 HOH 75 576 75 HOH WAT A . D 4 HOH 76 577 76 HOH WAT A . D 4 HOH 77 578 77 HOH WAT A . D 4 HOH 78 579 78 HOH WAT A . D 4 HOH 79 580 79 HOH WAT A . D 4 HOH 80 581 80 HOH WAT A . D 4 HOH 81 582 81 HOH WAT A . D 4 HOH 82 583 82 HOH WAT A . D 4 HOH 83 584 83 HOH WAT A . D 4 HOH 84 585 84 HOH WAT A . D 4 HOH 85 586 85 HOH WAT A . D 4 HOH 86 587 86 HOH WAT A . D 4 HOH 87 588 87 HOH WAT A . D 4 HOH 88 589 88 HOH WAT A . D 4 HOH 89 590 89 HOH WAT A . D 4 HOH 90 591 90 HOH WAT A . D 4 HOH 91 592 91 HOH WAT A . D 4 HOH 92 593 92 HOH WAT A . D 4 HOH 93 594 93 HOH WAT A . D 4 HOH 94 595 94 HOH WAT A . D 4 HOH 95 596 95 HOH WAT A . D 4 HOH 96 597 96 HOH WAT A . D 4 HOH 97 598 97 HOH WAT A . D 4 HOH 98 599 98 HOH WAT A . D 4 HOH 99 600 99 HOH WAT A . D 4 HOH 100 601 100 HOH WAT A . D 4 HOH 101 602 101 HOH WAT A . D 4 HOH 102 603 102 HOH WAT A . D 4 HOH 103 604 103 HOH WAT A . D 4 HOH 104 605 104 HOH WAT A . D 4 HOH 105 606 105 HOH WAT A . D 4 HOH 106 607 106 HOH WAT A . D 4 HOH 107 608 107 HOH WAT A . D 4 HOH 108 609 108 HOH WAT A . D 4 HOH 109 610 109 HOH WAT A . D 4 HOH 110 611 110 HOH WAT A . D 4 HOH 111 612 111 HOH WAT A . D 4 HOH 112 613 112 HOH WAT A . D 4 HOH 113 614 113 HOH WAT A . D 4 HOH 114 615 114 HOH WAT A . D 4 HOH 115 616 115 HOH WAT A . D 4 HOH 116 617 116 HOH WAT A . D 4 HOH 117 618 117 HOH WAT A . D 4 HOH 118 619 118 HOH WAT A . D 4 HOH 119 620 119 HOH WAT A . D 4 HOH 120 621 120 HOH WAT A . D 4 HOH 121 622 121 HOH WAT A . D 4 HOH 122 623 122 HOH WAT A . D 4 HOH 123 624 123 HOH WAT A . D 4 HOH 124 625 124 HOH WAT A . D 4 HOH 125 626 125 HOH WAT A . D 4 HOH 126 627 126 HOH WAT A . D 4 HOH 127 628 127 HOH WAT A . D 4 HOH 128 629 128 HOH WAT A . D 4 HOH 129 630 129 HOH WAT A . D 4 HOH 130 631 130 HOH WAT A . D 4 HOH 131 632 131 HOH WAT A . D 4 HOH 132 633 132 HOH WAT A . D 4 HOH 133 634 133 HOH WAT A . D 4 HOH 134 635 134 HOH WAT A . D 4 HOH 135 636 135 HOH WAT A . D 4 HOH 136 637 136 HOH WAT A . D 4 HOH 137 638 137 HOH WAT A . D 4 HOH 138 639 138 HOH WAT A . D 4 HOH 139 640 139 HOH WAT A . D 4 HOH 140 641 140 HOH WAT A . D 4 HOH 141 642 141 HOH WAT A . D 4 HOH 142 643 142 HOH WAT A . D 4 HOH 143 644 143 HOH WAT A . D 4 HOH 144 645 144 HOH WAT A . D 4 HOH 145 646 145 HOH WAT A . D 4 HOH 146 647 146 HOH WAT A . D 4 HOH 147 648 147 HOH WAT A . D 4 HOH 148 649 148 HOH WAT A . D 4 HOH 149 650 149 HOH WAT A . D 4 HOH 150 651 150 HOH WAT A . D 4 HOH 151 652 151 HOH WAT A . D 4 HOH 152 653 152 HOH WAT A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 22 A MSE 0 ? MET SELENOMETHIONINE 2 A MSE 23 A MSE 1 ? MET SELENOMETHIONINE 3 A MSE 77 A MSE 55 ? MET SELENOMETHIONINE 4 A MSE 114 A MSE 92 ? MET SELENOMETHIONINE 5 A MSE 131 A MSE 109 ? MET SELENOMETHIONINE 6 A MSE 150 A MSE 128 ? MET SELENOMETHIONINE 7 A MSE 191 A MSE 169 ? MET SELENOMETHIONINE 8 A MSE 195 A MSE 173 ? MET SELENOMETHIONINE 9 A MSE 224 A MSE 202 ? MET SELENOMETHIONINE 10 A MSE 258 A MSE 236 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA monomeric 1 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 47.6800000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A LYS 235 ? A LYS 213 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 OD2 ? A ASP 238 ? A ASP 216 ? 1_555 84.6 ? 2 O ? A LYS 235 ? A LYS 213 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? A TYR 240 ? A TYR 218 ? 1_555 171.4 ? 3 OD2 ? A ASP 238 ? A ASP 216 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? A TYR 240 ? A TYR 218 ? 1_555 89.4 ? 4 O ? A LYS 235 ? A LYS 213 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 582 ? 1_555 87.3 ? 5 OD2 ? A ASP 238 ? A ASP 216 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 582 ? 1_555 83.8 ? 6 O ? A TYR 240 ? A TYR 218 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 582 ? 1_555 98.1 ? 7 O ? A LYS 235 ? A LYS 213 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 531 ? 1_555 90.9 ? 8 OD2 ? A ASP 238 ? A ASP 216 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 531 ? 1_555 166.0 ? 9 O ? A TYR 240 ? A TYR 218 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 531 ? 1_555 96.4 ? 10 O ? D HOH . ? A HOH 582 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 531 ? 1_555 82.8 ? 11 O ? A LYS 235 ? A LYS 213 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 511 ? 1_555 84.4 ? 12 OD2 ? A ASP 238 ? A ASP 216 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 511 ? 1_555 98.7 ? 13 O ? A TYR 240 ? A TYR 218 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 511 ? 1_555 90.5 ? 14 O ? D HOH . ? A HOH 582 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 511 ? 1_555 171.0 ? 15 O ? D HOH . ? A HOH 531 ? 1_555 MG ? B MG . ? A MG 501 ? 1_555 O ? D HOH . ? A HOH 511 ? 1_555 94.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-17 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 57.3594 39.6975 21.3913 -0.0960 -0.0549 -0.1044 -0.0286 -0.0305 0.0365 2.0622 2.8803 1.3444 -1.7480 -0.2376 0.1033 0.1358 -0.0911 -0.0447 -0.0014 -0.0199 -0.0721 -0.0425 -0.0260 0.0218 'X-RAY DIFFRACTION' 2 ? refined 81.3782 25.7499 32.2201 -0.1061 0.2071 -0.0736 0.0341 -0.0068 0.0912 15.6810 3.9168 9.4463 -4.5680 7.4619 -2.0515 -0.2467 0.1075 0.1392 -0.6825 0.0752 -0.0115 0.3456 -0.2163 1.0035 'X-RAY DIFFRACTION' 3 ? refined 80.6206 19.0486 24.3563 -0.0420 -0.0841 -0.0819 0.0383 -0.0131 0.0724 6.9970 1.0319 0.3777 -0.8824 0.6812 0.1919 -0.0669 -0.0118 0.0787 -0.3633 -0.4159 0.0378 -0.0507 0.2378 0.0558 'X-RAY DIFFRACTION' 4 ? refined 91.7559 22.5470 17.5372 0.0080 -0.0552 -0.1495 0.0769 0.0515 0.0114 7.3962 8.6303 6.0806 0.3019 1.1521 -2.0601 0.0492 0.0725 -0.1217 0.3618 -0.1648 0.2903 -0.2852 -0.1564 -0.0423 'X-RAY DIFFRACTION' 5 ? refined 73.7884 19.2829 29.7515 -0.1043 -0.0193 -0.1161 0.0492 -0.0183 0.1247 7.9025 4.0166 2.1110 -1.4924 0.3437 0.4875 -0.1975 0.1936 0.0040 -1.1044 -0.5486 0.0906 0.3938 0.1500 0.0248 'X-RAY DIFFRACTION' 6 ? refined 64.0648 29.3605 3.5840 0.0033 0.1301 -0.2182 0.1568 -0.0567 -0.0350 10.3742 17.2624 8.7137 -4.1852 4.0752 -5.9460 0.5359 -0.4027 -0.1331 1.9443 -0.0013 -0.0158 -1.1273 0.0786 0.5026 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 124 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 135 A 144 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 166 A 200 ? . . . . ? 'X-RAY DIFFRACTION' 4 3 A 207 A 229 ? . . . . ? 'X-RAY DIFFRACTION' 5 4 A 230 A 249 ? . . . . ? 'X-RAY DIFFRACTION' 6 5 A 250 A 286 ? . . . . ? 'X-RAY DIFFRACTION' 7 6 A 296 A 312 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 DgkB phasing 'model used for rigid body refinement' ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 129 ? ? 51.09 -105.56 2 1 LYS A 165 ? ? -102.04 78.99 3 1 LEU A 193 ? ? -170.82 144.32 4 1 LEU A 198 ? ? -106.12 -65.07 5 1 MSE A 202 ? ? -141.84 -155.23 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER -2 ? OG ? A SER 20 OG 2 1 Y 1 A HIS -1 ? CG ? A HIS 21 CG 3 1 Y 1 A HIS -1 ? ND1 ? A HIS 21 ND1 4 1 Y 1 A HIS -1 ? CD2 ? A HIS 21 CD2 5 1 Y 1 A HIS -1 ? CE1 ? A HIS 21 CE1 6 1 Y 1 A HIS -1 ? NE2 ? A HIS 21 NE2 7 1 Y 1 A MSE 0 ? CG ? A MSE 22 CG 8 1 Y 1 A MSE 0 ? SE ? A MSE 22 SE 9 1 Y 1 A MSE 0 ? CE ? A MSE 22 CE 10 1 Y 1 A GLN 144 ? CG ? A GLN 166 CG 11 1 Y 1 A GLN 144 ? CD ? A GLN 166 CD 12 1 Y 1 A GLN 144 ? OE1 ? A GLN 166 OE1 13 1 Y 1 A GLN 144 ? NE2 ? A GLN 166 NE2 14 1 Y 1 A TYR 162 ? CG ? A TYR 184 CG 15 1 Y 1 A TYR 162 ? CD1 ? A TYR 184 CD1 16 1 Y 1 A TYR 162 ? CD2 ? A TYR 184 CD2 17 1 Y 1 A TYR 162 ? CE1 ? A TYR 184 CE1 18 1 Y 1 A TYR 162 ? CE2 ? A TYR 184 CE2 19 1 Y 1 A TYR 162 ? CZ ? A TYR 184 CZ 20 1 Y 1 A TYR 162 ? OH ? A TYR 184 OH 21 1 Y 1 A LYS 165 ? CG ? A LYS 187 CG 22 1 Y 1 A LYS 165 ? CD ? A LYS 187 CD 23 1 Y 1 A LYS 165 ? CE ? A LYS 187 CE 24 1 Y 1 A LYS 165 ? NZ ? A LYS 187 NZ 25 1 Y 1 A GLN 267 ? CG ? A GLN 289 CG 26 1 Y 1 A GLN 267 ? CD ? A GLN 289 CD 27 1 Y 1 A GLN 267 ? OE1 ? A GLN 289 OE1 28 1 Y 1 A GLN 267 ? NE2 ? A GLN 289 NE2 29 1 Y 1 A ASP 309 ? CG ? A ASP 331 CG 30 1 Y 1 A ASP 309 ? OD1 ? A ASP 331 OD1 31 1 Y 1 A ASP 309 ? OD2 ? A ASP 331 OD2 32 1 Y 1 A ASP 310 ? CG ? A ASP 332 CG 33 1 Y 1 A ASP 310 ? OD1 ? A ASP 332 OD1 34 1 Y 1 A ASP 310 ? OD2 ? A ASP 332 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -21 ? A MSE 1 2 1 Y 1 A GLY -20 ? A GLY 2 3 1 Y 1 A SER -19 ? A SER 3 4 1 Y 1 A SER -18 ? A SER 4 5 1 Y 1 A HIS -17 ? A HIS 5 6 1 Y 1 A HIS -16 ? A HIS 6 7 1 Y 1 A HIS -15 ? A HIS 7 8 1 Y 1 A HIS -14 ? A HIS 8 9 1 Y 1 A HIS -13 ? A HIS 9 10 1 Y 1 A HIS -12 ? A HIS 10 11 1 Y 1 A HIS -11 ? A HIS 11 12 1 Y 1 A SER -10 ? A SER 12 13 1 Y 1 A SER -9 ? A SER 13 14 1 Y 1 A GLY -8 ? A GLY 14 15 1 Y 1 A LEU -7 ? A LEU 15 16 1 Y 1 A VAL -6 ? A VAL 16 17 1 Y 1 A PRO -5 ? A PRO 17 18 1 Y 1 A ARG -4 ? A ARG 18 19 1 Y 1 A VAL 145 ? A VAL 167 20 1 Y 1 A SER 146 ? A SER 168 21 1 Y 1 A TYR 147 ? A TYR 169 22 1 Y 1 A GLU 148 ? A GLU 170 23 1 Y 1 A THR 149 ? A THR 171 24 1 Y 1 A PRO 150 ? A PRO 172 25 1 Y 1 A SER 151 ? A SER 173 26 1 Y 1 A LYS 152 ? A LYS 174 27 1 Y 1 A LEU 153 ? A LEU 175 28 1 Y 1 A LYS 154 ? A LYS 176 29 1 Y 1 A SER 155 ? A SER 177 30 1 Y 1 A ILE 156 ? A ILE 178 31 1 Y 1 A VAL 157 ? A VAL 179 32 1 Y 1 A ILE 313 ? A ILE 335 33 1 Y 1 A GLU 314 ? A GLU 336 34 1 Y 1 A GLU 315 ? A GLU 337 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "ADENOSINE-5'-DIPHOSPHATE" ADP 4 water HOH #