HEADER HYDROLASE 08-AUG-07 2QVB TITLE CRYSTAL STRUCTURE OF HALOALKANE DEHALOGENASE RV2579 FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOALKANE DEHALOGENASE 3; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.8.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: DHAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDEST-15 KEYWDS RV2579, HALOALKANE DEHALOGENASE, ALPHA-BETA HYDROLASE PROTEIN, TB KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, TBSGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.A.MAZUMDAR,J.HULECKI,M.M.CHERNEY,C.R.GAREN,M.N.G.JAMES,TB AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 5 30-AUG-23 2QVB 1 REMARK REVDAT 4 25-OCT-17 2QVB 1 REMARK REVDAT 3 13-JUL-11 2QVB 1 VERSN REVDAT 2 24-FEB-09 2QVB 1 VERSN REVDAT 1 12-FEB-08 2QVB 0 JRNL AUTH P.A.MAZUMDAR,J.C.HULECKI,M.M.CHERNEY,C.R.GAREN,M.N.JAMES JRNL TITL X-RAY CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS JRNL TITL 2 HALOALKANE DEHALOGENASE RV2579. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1784 351 2008 JRNL REFN ISSN 0006-3002 JRNL PMID 18062934 JRNL DOI 10.1016/J.BBAPAP.2007.10.014 REMARK 2 REMARK 2 RESOLUTION. 1.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 127495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.120 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6695 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7010 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1500 REMARK 3 BIN FREE R VALUE SET COUNT : 337 REMARK 3 BIN FREE R VALUE : 0.2000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 669 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.041 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.138 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4873 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3380 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6617 ; 2.177 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8144 ; 1.192 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 595 ; NULL ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ; NULL ;22.627 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 754 ; NULL ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ; NULL ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 682 ; NULL ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5487 ; NULL ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1067 ; NULL ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 975 ; NULL ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3719 ; NULL ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2396 ; NULL ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2520 ; NULL ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 404 ; NULL ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; NULL ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 89 ; NULL ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 52 ; NULL ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3036 ; NULL ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1203 ; NULL ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4772 ; NULL ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2123 ; NULL ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1845 ; NULL ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9463 ; NULL ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 676 ; NULL ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8117 ; NULL ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044100. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115869 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 134255 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.1 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.27800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1MJ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MAGNESIUM ACETATE, 0.1M REMARK 280 TRIS, 5% ETHYLENE GLYCOL , PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.35000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.85000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.85000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.35000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 3 N CA CB REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 GLN A 11 CB CG CD OE1 NE2 REMARK 470 ASP A 79 OD2 REMARK 470 ASP A 124 OD2 REMARK 470 GLN A 153 CG CD NE2 REMARK 470 GLN A 182 CG CD OE1 NE2 REMARK 470 GLU A 186 CD OE1 OE2 REMARK 470 ARG A 193 NH1 REMARK 470 GLU A 227 CD OE2 REMARK 470 ASP A 236 OD1 OD2 REMARK 470 GLU A 281 OE2 REMARK 470 PHE B 4 CD1 CE1 REMARK 470 GLU B 7 CG CD OE2 REMARK 470 GLY B 10 O REMARK 470 GLN B 11 CG CD OE1 NE2 REMARK 470 LYS B 20 NZ REMARK 470 LYS B 29 NZ REMARK 470 ASP B 79 OD2 REMARK 470 ASP B 124 OD2 REMARK 470 GLN B 182 CD NE2 REMARK 470 GLU B 227 CD OE2 REMARK 470 ASP B 236 OD1 REMARK 470 GLU B 281 CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLY A 28 O REMARK 480 LEU A 224 CD1 REMARK 480 MET A 237 CE REMARK 480 LYS B 29 CE REMARK 480 ASP B 31 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 28 C GLY A 28 O 0.124 REMARK 500 ASP A 79 CB ASP A 79 CG 0.151 REMARK 500 ASP A 79 CG ASP A 79 OD1 0.147 REMARK 500 ARG A 87 CZ ARG A 87 NH1 0.095 REMARK 500 VAL A 151 CB VAL A 151 CG1 -0.149 REMARK 500 GLU A 220 CD GLU A 220 OE2 0.135 REMARK 500 GLU A 233 CG GLU A 233 CD 0.103 REMARK 500 GLU A 266 CD GLU A 266 OE1 0.070 REMARK 500 GLU B 54 CD GLU B 54 OE2 0.070 REMARK 500 ASP B 79 CB ASP B 79 CG 0.134 REMARK 500 VAL B 151 CB VAL B 151 CG1 -0.134 REMARK 500 GLU B 220 CD GLU B 220 OE2 0.090 REMARK 500 ARG B 253 NE ARG B 253 CZ 0.123 REMARK 500 ARG B 253 CZ ARG B 253 NH2 0.088 REMARK 500 ARG B 295 CZ ARG B 295 NH2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 27 OE1 - CD - OE2 ANGL. DEV. = -8.9 DEGREES REMARK 500 LYS A 29 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 ARG A 58 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 71 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 79 CB - CG - OD1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 202 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A 237 CG - SD - CE ANGL. DEV. = -19.3 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 295 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG B 21 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 47 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP B 79 CB - CG - OD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG B 87 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 109 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 123 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 123 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 193 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 MET B 237 CG - SD - CE ANGL. DEV. = -18.2 DEGREES REMARK 500 ARG B 253 NH1 - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG B 253 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 253 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 293 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 293 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 40 52.34 -105.14 REMARK 500 THR A 41 -160.21 -102.94 REMARK 500 ASP A 109 -132.42 57.77 REMARK 500 ALA A 248 -71.71 -144.56 REMARK 500 VAL A 272 -91.84 -107.23 REMARK 500 PHE B 4 68.14 -107.45 REMARK 500 PRO B 40 52.30 -107.21 REMARK 500 THR B 41 -161.37 -105.87 REMARK 500 ASP B 109 -132.08 52.63 REMARK 500 ARG B 156 37.45 -88.48 REMARK 500 ALA B 248 -65.38 -147.25 REMARK 500 VAL B 272 -88.16 -109.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 28 16.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV2579 RELATED DB: TARGETDB DBREF 2QVB A 3 299 UNP Q50642 DHAA_MYCTU 3 299 DBREF 2QVB B 3 299 UNP Q50642 DHAA_MYCTU 3 299 SEQRES 1 A 297 ALA PHE GLY VAL GLU PRO TYR GLY GLN PRO LYS TYR LEU SEQRES 2 A 297 GLU ILE ALA GLY LYS ARG MET ALA TYR ILE ASP GLU GLY SEQRES 3 A 297 LYS GLY ASP ALA ILE VAL PHE GLN HIS GLY ASN PRO THR SEQRES 4 A 297 SER SER TYR LEU TRP ARG ASN ILE MET PRO HIS LEU GLU SEQRES 5 A 297 GLY LEU GLY ARG LEU VAL ALA CYS ASP LEU ILE GLY MET SEQRES 6 A 297 GLY ALA SER ASP LYS LEU SER PRO SER GLY PRO ASP ARG SEQRES 7 A 297 TYR SER TYR GLY GLU GLN ARG ASP PHE LEU PHE ALA LEU SEQRES 8 A 297 TRP ASP ALA LEU ASP LEU GLY ASP HIS VAL VAL LEU VAL SEQRES 9 A 297 LEU HIS ASP TRP GLY SER ALA LEU GLY PHE ASP TRP ALA SEQRES 10 A 297 ASN GLN HIS ARG ASP ARG VAL GLN GLY ILE ALA PHE MET SEQRES 11 A 297 GLU ALA ILE VAL THR PRO MET THR TRP ALA ASP TRP PRO SEQRES 12 A 297 PRO ALA VAL ARG GLY VAL PHE GLN GLY PHE ARG SER PRO SEQRES 13 A 297 GLN GLY GLU PRO MET ALA LEU GLU HIS ASN ILE PHE VAL SEQRES 14 A 297 GLU ARG VAL LEU PRO GLY ALA ILE LEU ARG GLN LEU SER SEQRES 15 A 297 ASP GLU GLU MET ASN HIS TYR ARG ARG PRO PHE VAL ASN SEQRES 16 A 297 GLY GLY GLU ASP ARG ARG PRO THR LEU SER TRP PRO ARG SEQRES 17 A 297 ASN LEU PRO ILE ASP GLY GLU PRO ALA GLU VAL VAL ALA SEQRES 18 A 297 LEU VAL ASN GLU TYR ARG SER TRP LEU GLU GLU THR ASP SEQRES 19 A 297 MET PRO LYS LEU PHE ILE ASN ALA GLU PRO GLY ALA ILE SEQRES 20 A 297 ILE THR GLY ARG ILE ARG ASP TYR VAL ARG SER TRP PRO SEQRES 21 A 297 ASN GLN THR GLU ILE THR VAL PRO GLY VAL HIS PHE VAL SEQRES 22 A 297 GLN GLU ASP SER PRO GLU GLU ILE GLY ALA ALA ILE ALA SEQRES 23 A 297 GLN PHE VAL ARG ARG LEU ARG SER ALA ALA GLY SEQRES 1 B 297 ALA PHE GLY VAL GLU PRO TYR GLY GLN PRO LYS TYR LEU SEQRES 2 B 297 GLU ILE ALA GLY LYS ARG MET ALA TYR ILE ASP GLU GLY SEQRES 3 B 297 LYS GLY ASP ALA ILE VAL PHE GLN HIS GLY ASN PRO THR SEQRES 4 B 297 SER SER TYR LEU TRP ARG ASN ILE MET PRO HIS LEU GLU SEQRES 5 B 297 GLY LEU GLY ARG LEU VAL ALA CYS ASP LEU ILE GLY MET SEQRES 6 B 297 GLY ALA SER ASP LYS LEU SER PRO SER GLY PRO ASP ARG SEQRES 7 B 297 TYR SER TYR GLY GLU GLN ARG ASP PHE LEU PHE ALA LEU SEQRES 8 B 297 TRP ASP ALA LEU ASP LEU GLY ASP HIS VAL VAL LEU VAL SEQRES 9 B 297 LEU HIS ASP TRP GLY SER ALA LEU GLY PHE ASP TRP ALA SEQRES 10 B 297 ASN GLN HIS ARG ASP ARG VAL GLN GLY ILE ALA PHE MET SEQRES 11 B 297 GLU ALA ILE VAL THR PRO MET THR TRP ALA ASP TRP PRO SEQRES 12 B 297 PRO ALA VAL ARG GLY VAL PHE GLN GLY PHE ARG SER PRO SEQRES 13 B 297 GLN GLY GLU PRO MET ALA LEU GLU HIS ASN ILE PHE VAL SEQRES 14 B 297 GLU ARG VAL LEU PRO GLY ALA ILE LEU ARG GLN LEU SER SEQRES 15 B 297 ASP GLU GLU MET ASN HIS TYR ARG ARG PRO PHE VAL ASN SEQRES 16 B 297 GLY GLY GLU ASP ARG ARG PRO THR LEU SER TRP PRO ARG SEQRES 17 B 297 ASN LEU PRO ILE ASP GLY GLU PRO ALA GLU VAL VAL ALA SEQRES 18 B 297 LEU VAL ASN GLU TYR ARG SER TRP LEU GLU GLU THR ASP SEQRES 19 B 297 MET PRO LYS LEU PHE ILE ASN ALA GLU PRO GLY ALA ILE SEQRES 20 B 297 ILE THR GLY ARG ILE ARG ASP TYR VAL ARG SER TRP PRO SEQRES 21 B 297 ASN GLN THR GLU ILE THR VAL PRO GLY VAL HIS PHE VAL SEQRES 22 B 297 GLN GLU ASP SER PRO GLU GLU ILE GLY ALA ALA ILE ALA SEQRES 23 B 297 GLN PHE VAL ARG ARG LEU ARG SER ALA ALA GLY HET CL A 2 1 HET EDO A 1 8 HET CL B 2 1 HET EDO B 1 8 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL 2(CL 1-) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 7 HOH *669(H2 O) HELIX 1 1 SER A 42 ARG A 47 5 6 HELIX 2 2 ILE A 49 GLU A 54 5 6 HELIX 3 3 SER A 82 LEU A 97 1 16 HELIX 4 4 ASP A 109 HIS A 122 1 14 HELIX 5 5 THR A 140 TRP A 144 5 5 HELIX 6 6 PRO A 145 ALA A 147 5 3 HELIX 7 7 VAL A 148 ARG A 156 1 9 HELIX 8 8 GLN A 159 GLU A 166 1 8 HELIX 9 9 ASN A 168 ARG A 173 1 6 HELIX 10 10 ARG A 173 ALA A 178 1 6 HELIX 11 11 SER A 184 ARG A 193 1 10 HELIX 12 12 PRO A 194 VAL A 196 5 3 HELIX 13 13 GLY A 199 ASP A 201 5 3 HELIX 14 14 ARG A 202 LEU A 212 1 11 HELIX 15 15 PRO A 218 THR A 235 1 18 HELIX 16 16 THR A 251 SER A 260 1 10 HELIX 17 17 PHE A 274 ASP A 278 5 5 HELIX 18 18 SER A 279 ALA A 298 1 20 HELIX 19 19 SER B 42 ARG B 47 5 6 HELIX 20 20 ILE B 49 GLU B 54 5 6 HELIX 21 21 SER B 82 LEU B 97 1 16 HELIX 22 22 ASP B 109 HIS B 122 1 14 HELIX 23 23 THR B 140 TRP B 144 5 5 HELIX 24 24 PRO B 145 ALA B 147 5 3 HELIX 25 25 VAL B 148 ARG B 156 1 9 HELIX 26 26 GLN B 159 GLU B 166 1 8 HELIX 27 27 ASN B 168 ARG B 173 1 6 HELIX 28 28 ARG B 173 ALA B 178 1 6 HELIX 29 29 SER B 184 ARG B 193 1 10 HELIX 30 30 PRO B 194 VAL B 196 5 3 HELIX 31 31 GLY B 199 ASP B 201 5 3 HELIX 32 32 ARG B 202 LEU B 212 1 11 HELIX 33 33 PRO B 218 THR B 235 1 18 HELIX 34 34 THR B 251 SER B 260 1 10 HELIX 35 35 PHE B 274 ASP B 278 5 5 HELIX 36 36 SER B 279 GLY B 299 1 21 SHEET 1 A 8 LYS A 13 ILE A 17 0 SHEET 2 A 8 LYS A 20 GLU A 27 -1 O LYS A 20 N ILE A 17 SHEET 3 A 8 ARG A 58 CYS A 62 -1 O LEU A 59 N GLU A 27 SHEET 4 A 8 ALA A 32 GLN A 36 1 N ILE A 33 O ARG A 58 SHEET 5 A 8 VAL A 103 HIS A 108 1 O VAL A 106 N VAL A 34 SHEET 6 A 8 VAL A 126 MET A 132 1 O ALA A 130 N LEU A 105 SHEET 7 A 8 LYS A 239 PRO A 246 1 O ILE A 242 N PHE A 131 SHEET 8 A 8 GLN A 264 GLY A 271 1 O THR A 265 N PHE A 241 SHEET 1 B 8 LYS B 13 ILE B 17 0 SHEET 2 B 8 LYS B 20 GLU B 27 -1 O LYS B 20 N ILE B 17 SHEET 3 B 8 ARG B 58 CYS B 62 -1 O LEU B 59 N GLU B 27 SHEET 4 B 8 ALA B 32 GLN B 36 1 N PHE B 35 O VAL B 60 SHEET 5 B 8 VAL B 103 HIS B 108 1 O VAL B 106 N VAL B 34 SHEET 6 B 8 VAL B 126 MET B 132 1 O ALA B 130 N LEU B 105 SHEET 7 B 8 LYS B 239 PRO B 246 1 O ILE B 242 N PHE B 131 SHEET 8 B 8 GLN B 264 GLY B 271 1 O THR B 265 N PHE B 241 CISPEP 1 ASN A 39 PRO A 40 0 -6.10 CISPEP 2 SER A 74 PRO A 75 0 -16.24 CISPEP 3 GLU A 217 PRO A 218 0 -4.47 CISPEP 4 GLU A 245 PRO A 246 0 4.73 CISPEP 5 ASN B 39 PRO B 40 0 -3.35 CISPEP 6 SER B 74 PRO B 75 0 -5.05 CISPEP 7 GLU B 217 PRO B 218 0 -6.60 CISPEP 8 GLU B 245 PRO B 246 0 7.30 SITE 1 AC1 5 ASN A 39 TRP A 110 TRP A 208 PRO A 209 SITE 2 AC1 5 HOH A 632 SITE 1 AC2 5 ASN B 39 TRP B 110 TRP B 208 PRO B 209 SITE 2 AC2 5 HOH B 629 SITE 1 AC3 3 VAL A 174 HIS A 273 HOH A 637 SITE 1 AC4 2 HIS B 273 HOH B 630 CRYST1 60.700 65.700 129.700 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016482 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007713 0.00000