HEADER LIGASE 09-AUG-07 2QVY TITLE 4-CHLOROBENZOYL-COA LIGASE/SYNTHETASE, I303G MUTATION, BOUND TO 3,4- TITLE 2 DICHLOROBENZOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-CHLOROBENZOATE COA LIGASE; COMPND 3 CHAIN: X; COMPND 4 EC: 6.2.1.33; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALCALIGENES SP.; SOURCE 3 ORGANISM_TAXID: 206162; SOURCE 4 STRAIN: AL3007; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE-70 KEYWDS ADENYLATE-FORMING ENZYMES, ACYL-COA LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.WU,A.S.REGER,J.CAO,A.M.GULICK,D.DUNAWAY-MARIANO REVDAT 5 30-AUG-23 2QVY 1 REMARK REVDAT 4 13-JUL-11 2QVY 1 VERSN REVDAT 3 24-FEB-09 2QVY 1 VERSN REVDAT 2 25-DEC-07 2QVY 1 JRNL REVDAT 1 18-DEC-07 2QVY 0 JRNL AUTH R.WU,A.S.REGER,J.CAO,A.M.GULICK,D.DUNAWAY-MARIANO JRNL TITL RATIONAL REDESIGN OF THE 4-CHLOROBENZOATE BINDING SITE OF JRNL TITL 2 4-CHLOROBENZOATE: COENZYME A LIGASE FOR EXPANDED SUBSTRATE JRNL TITL 3 RANGE. JRNL REF BIOCHEMISTRY V. 46 14487 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 18027984 JRNL DOI 10.1021/BI701609W REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 872 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1007 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3716 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.871 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.344 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.392 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3795 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5173 ; 1.692 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 7.375 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;35.099 ;22.987 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 583 ;20.472 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;20.782 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 612 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2886 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1803 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2610 ; 0.322 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 135 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.323 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2525 ; 2.649 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3971 ; 4.028 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1387 ; 3.003 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1202 ; 4.457 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1 X 402 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6533 -46.6318 -10.7108 REMARK 3 T TENSOR REMARK 3 T11: -0.2440 T22: 0.0199 REMARK 3 T33: -0.1139 T12: -0.0435 REMARK 3 T13: 0.1261 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 4.0425 L22: 2.3403 REMARK 3 L33: 2.7304 L12: 2.3112 REMARK 3 L13: -2.2916 L23: -1.8923 REMARK 3 S TENSOR REMARK 3 S11: -0.0855 S12: 0.7841 S13: 0.1399 REMARK 3 S21: 0.2378 S22: 0.2621 S23: 0.3079 REMARK 3 S31: -0.0020 S32: -0.6894 S33: -0.1765 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 403 X 502 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0397 -62.0251 16.7429 REMARK 3 T TENSOR REMARK 3 T11: 0.0470 T22: -0.0286 REMARK 3 T33: -0.1394 T12: -0.1168 REMARK 3 T13: 0.1929 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 3.4317 L22: 4.3829 REMARK 3 L33: 5.5483 L12: 1.6118 REMARK 3 L13: -0.2735 L23: -1.3740 REMARK 3 S TENSOR REMARK 3 S11: 0.5974 S12: -0.2977 S13: 0.1482 REMARK 3 S21: 0.6004 S22: -0.3053 S23: 0.2051 REMARK 3 S31: -0.6238 S32: 0.4368 S33: -0.2921 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17323 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1T5D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-22% PENTAERYTHRITOL PROPOXYLATE REMARK 280 426, 50 MM BTP, 1 MM ATP, 1 MM 3,4-DCB, PH 6.5-6.75, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K, PH 6.7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.61400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.80700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.80700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.61400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -23.80700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY X 110 REMARK 465 ARG X 111 REMARK 465 GLY X 163 REMARK 465 THR X 164 REMARK 465 SER X 504 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG X 87 NE CZ NH1 NH2 REMARK 470 LYS X 89 CE NZ REMARK 470 LYS X 98 CG CD CE NZ REMARK 470 VAL X 109 CG1 CG2 REMARK 470 GLN X 112 CG CD OE1 NE2 REMARK 470 VAL X 113 CG1 CG2 REMARK 470 PHE X 118 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE X 126 CG1 CG2 CD1 REMARK 470 GLU X 137 CG CD OE1 OE2 REMARK 470 HIS X 264 CG ND1 CD2 CE1 NE2 REMARK 470 LYS X 270 CG CD CE NZ REMARK 470 ASP X 272 CG OD1 OD2 REMARK 470 GLU X 349 CG CD OE1 OE2 REMARK 470 ASP X 437 CG OD1 OD2 REMARK 470 GLN X 438 CG CD OE1 NE2 REMARK 470 ASN X 491 CG OD1 ND2 REMARK 470 LYS X 492 CG CD CE NZ REMARK 470 ARG X 496 CG CD NE CZ NH1 NH2 REMARK 470 GLN X 500 CG CD OE1 NE2 REMARK 470 SER X 503 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS X 47 CE1 HIS X 47 NE2 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA X 15 54.66 -145.85 REMARK 500 ALA X 20 -64.30 -97.46 REMARK 500 LEU X 51 112.22 176.55 REMARK 500 GLN X 54 -8.26 61.31 REMARK 500 ALA X 156 -36.97 -135.37 REMARK 500 THR X 161 -81.66 -108.75 REMARK 500 VAL X 214 -80.77 -100.56 REMARK 500 LEU X 215 -72.14 -47.33 REMARK 500 GLN X 244 40.81 70.38 REMARK 500 ALA X 265 14.19 -152.59 REMARK 500 LEU X 269 51.91 84.14 REMARK 500 LEU X 271 31.48 -91.63 REMARK 500 MET X 310 -129.43 61.77 REMARK 500 PHE X 329 -23.02 84.83 REMARK 500 ALA X 346 -170.07 -51.20 REMARK 500 SER X 358 -146.73 -76.83 REMARK 500 ASP X 378 52.64 39.39 REMARK 500 SER X 384 18.69 58.57 REMARK 500 ALA X 436 99.09 -67.12 REMARK 500 ASP X 437 -132.68 -161.70 REMARK 500 ARG X 439 -70.43 95.95 REMARK 500 TRP X 440 160.22 161.68 REMARK 500 ASP X 472 -74.30 -31.56 REMARK 500 LEU X 490 41.31 -96.99 REMARK 500 ASN X 491 29.69 44.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN X 438 ARG X 439 -132.26 REMARK 500 ARG X 439 TRP X 440 130.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 34Z X 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T5D RELATED DB: PDB REMARK 900 RELATED ID: 1PG4 RELATED DB: PDB REMARK 900 RELATED ID: 2QVX RELATED DB: PDB REMARK 900 RELATED ID: 2QVZ RELATED DB: PDB REMARK 900 RELATED ID: 2QW0 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHOR MENTIONED THAT THE SEQUENCE USED IN REMARK 999 THIS ENTRY MATCHES THE GB ACCESSION CODE AAN10109 REMARK 999 AND IS MUTATED AT RESIDUE 303 (I303G). DBREF 2QVY X 1 504 PDB 2QVX 2QVY 1 504 SEQRES 1 X 504 MET GLN THR VAL ASN GLU MET LEU ARG ARG ALA ALA THR SEQRES 2 X 504 ARG ALA PRO ASP HIS CYS ALA LEU ALA VAL PRO ALA ARG SEQRES 3 X 504 GLY LEU ARG LEU THR HIS ALA GLU LEU ARG ALA ARG VAL SEQRES 4 X 504 GLU ALA VAL ALA ALA ARG LEU HIS ALA ASP GLY LEU ARG SEQRES 5 X 504 PRO GLN GLN ARG VAL ALA VAL VAL ALA PRO ASN SER ALA SEQRES 6 X 504 ASP VAL VAL ILE ALA ILE LEU ALA LEU HIS ARG LEU GLY SEQRES 7 X 504 ALA VAL PRO ALA LEU LEU ASN PRO ARG LEU LYS SER ALA SEQRES 8 X 504 GLU LEU ALA GLU LEU ILE LYS ARG GLY GLU MET THR ALA SEQRES 9 X 504 ALA VAL ILE ALA VAL GLY ARG GLN VAL ALA ASP ALA ILE SEQRES 10 X 504 PHE GLN SER GLY SER GLY ALA ARG ILE ILE PHE LEU GLY SEQRES 11 X 504 ASP LEU VAL ARG ASP GLY GLU PRO TYR SER TYR GLY PRO SEQRES 12 X 504 PRO ILE GLU ASP PRO GLN ARG GLU PRO ALA GLN PRO ALA SEQRES 13 X 504 PHE ILE PHE TYR THR SER GLY THR THR GLY LEU PRO LYS SEQRES 14 X 504 ALA ALA ILE ILE PRO GLN ARG ALA ALA GLU SER ARG VAL SEQRES 15 X 504 LEU PHE MET SER THR GLN VAL GLY LEU ARG HIS GLY ARG SEQRES 16 X 504 HIS ASN VAL VAL LEU GLY LEU MET PRO LEU TYR HIS VAL SEQRES 17 X 504 VAL GLY PHE PHE ALA VAL LEU VAL ALA ALA LEU ALA LEU SEQRES 18 X 504 ASP GLY THR TYR VAL VAL VAL GLU GLU PHE ARG PRO VAL SEQRES 19 X 504 ASP ALA LEU GLN LEU VAL GLN GLN GLU GLN VAL THR SER SEQRES 20 X 504 LEU PHE ALA THR PRO THR HIS LEU ASP ALA LEU ALA ALA SEQRES 21 X 504 ALA ALA ALA HIS ALA GLY SER SER LEU LYS LEU ASP SER SEQRES 22 X 504 LEU ARG HIS VAL THR PHE ALA GLY ALA THR MET PRO ASP SEQRES 23 X 504 ALA VAL LEU GLU THR VAL HIS GLN HIS LEU PRO GLY GLU SEQRES 24 X 504 LYS VAL ASN GLY TYR GLY THR THR GLU ALA MET ASN SER SEQRES 25 X 504 LEU TYR MET ARG GLN PRO LYS THR GLY THR GLU MET ALA SEQRES 26 X 504 PRO GLY PHE PHE SER GLU VAL ARG ILE VAL ARG ILE GLY SEQRES 27 X 504 GLY GLY VAL ASP GLU ILE VAL ALA ASN GLY GLU GLU GLY SEQRES 28 X 504 GLU LEU ILE VAL ALA ALA SER ASP SER ALA PHE VAL GLY SEQRES 29 X 504 TYR LEU ASN GLN PRO GLN ALA THR ALA GLU LYS LEU GLN SEQRES 30 X 504 ASP GLY TRP TYR ARG THR SER ASP VAL ALA VAL TRP THR SEQRES 31 X 504 PRO GLU GLY THR VAL ARG ILE LEU GLY ARG VAL ASP ASP SEQRES 32 X 504 MET ILE ILE SER GLY GLY GLU ASN ILE HIS PRO SER GLU SEQRES 33 X 504 ILE GLU ARG VAL LEU GLY THR ALA PRO GLY VAL THR GLU SEQRES 34 X 504 VAL VAL VAL ILE GLY LEU ALA ASP GLN ARG TRP GLY GLN SEQRES 35 X 504 SER VAL THR ALA CYS VAL VAL PRO ARG LEU GLY GLU THR SEQRES 36 X 504 LEU SER ALA ASP ALA LEU ASP THR PHE CYS ARG SER SER SEQRES 37 X 504 GLU LEU ALA ASP PHE LYS ARG PRO LYS ARG TYR PHE ILE SEQRES 38 X 504 LEU ASP GLN LEU PRO LYS ASN ALA LEU ASN LYS VAL LEU SEQRES 39 X 504 ARG ARG GLN LEU VAL GLN GLN VAL SER SER HET 34Z X 505 11 HETNAM 34Z 3,4-DICHLOROBENZOATE FORMUL 2 34Z C7 H4 CL2 O2 FORMUL 3 HOH *25(H2 O) HELIX 1 1 THR X 3 ALA X 15 1 13 HELIX 2 2 HIS X 32 ASP X 49 1 18 HELIX 3 3 SER X 64 GLY X 78 1 15 HELIX 4 4 LYS X 89 GLY X 100 1 12 HELIX 5 5 VAL X 113 GLN X 119 1 7 HELIX 6 6 GLY X 130 LEU X 132 5 3 HELIX 7 7 ALA X 177 GLN X 188 1 12 HELIX 8 8 HIS X 207 PHE X 212 1 6 HELIX 9 9 VAL X 214 LEU X 221 1 8 HELIX 10 10 ARG X 232 GLN X 244 1 13 HELIX 11 11 THR X 251 HIS X 264 1 14 HELIX 12 12 PRO X 285 LEU X 296 1 12 HELIX 13 13 GLN X 368 LYS X 375 1 8 HELIX 14 14 HIS X 413 GLY X 422 1 10 HELIX 15 15 SER X 457 SER X 467 1 11 HELIX 16 16 ALA X 471 ARG X 475 5 5 HELIX 17 17 LEU X 494 SER X 503 1 10 SHEET 1 A 8 LEU X 28 THR X 31 0 SHEET 2 A 8 CYS X 19 VAL X 23 -1 N ALA X 20 O LEU X 30 SHEET 3 A 8 THR X 224 VAL X 227 1 O TYR X 225 N ALA X 20 SHEET 4 A 8 VAL X 198 GLY X 201 1 N GLY X 201 O VAL X 226 SHEET 5 A 8 SER X 247 PHE X 249 1 O SER X 247 N LEU X 200 SHEET 6 A 8 HIS X 276 PHE X 279 1 O THR X 278 N LEU X 248 SHEET 7 A 8 GLU X 299 THR X 306 1 O GLU X 299 N VAL X 277 SHEET 8 A 8 MET X 310 ARG X 316 -1 O MET X 315 N ASN X 302 SHEET 1 B 4 VAL X 80 LEU X 84 0 SHEET 2 B 4 ARG X 56 VAL X 60 1 N VAL X 59 O LEU X 84 SHEET 3 B 4 ALA X 104 ILE X 107 1 O VAL X 106 N ALA X 58 SHEET 4 B 4 ARG X 125 PHE X 128 1 O ILE X 127 N ALA X 105 SHEET 1 C 2 PRO X 155 TYR X 160 0 SHEET 2 C 2 ALA X 170 PRO X 174 -1 O ILE X 173 N PHE X 157 SHEET 1 D 5 GLU X 323 MET X 324 0 SHEET 2 D 5 VAL X 395 ARG X 400 -1 O VAL X 395 N MET X 324 SHEET 3 D 5 TRP X 380 TRP X 389 -1 N VAL X 386 O LEU X 398 SHEET 4 D 5 GLY X 351 ALA X 356 -1 N VAL X 355 O TYR X 381 SHEET 5 D 5 VAL X 332 VAL X 335 -1 N ARG X 333 O ILE X 354 SHEET 1 E 4 GLU X 323 MET X 324 0 SHEET 2 E 4 VAL X 395 ARG X 400 -1 O VAL X 395 N MET X 324 SHEET 3 E 4 TRP X 380 TRP X 389 -1 N VAL X 386 O LEU X 398 SHEET 4 E 4 LEU X 376 GLN X 377 -1 N GLN X 377 O TRP X 380 SHEET 1 F 2 ILE X 405 SER X 407 0 SHEET 2 F 2 GLU X 410 ILE X 412 -1 O ILE X 412 N ILE X 405 SHEET 1 G 3 VAL X 427 ASP X 437 0 SHEET 2 G 3 GLY X 441 PRO X 450 -1 O VAL X 449 N GLU X 429 SHEET 3 G 3 ARG X 478 ILE X 481 1 O ARG X 478 N ALA X 446 CISPEP 1 SER X 268 LEU X 269 0 10.12 SITE 1 AC1 10 PHE X 184 HIS X 207 VAL X 209 ALA X 280 SITE 2 AC1 10 GLY X 303 TYR X 304 GLY X 305 THR X 306 SITE 3 AC1 10 MET X 310 ASN X 311 CRYST1 127.813 127.813 71.421 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007824 0.004517 0.000000 0.00000 SCALE2 0.000000 0.009034 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014001 0.00000