HEADER ISOMERASE 09-AUG-07 2QW5 TITLE CRYSTAL STRUCTURE OF A PUTATIVE SUGAR PHOSPHATE ISOMERASE/EPIMERASE TITLE 2 (AVA4194) FROM ANABAENA VARIABILIS ATCC 29413 AT 1.78 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE-LIKE TIM BARREL; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANABAENA VARIABILIS ATCC 29413; SOURCE 3 ORGANISM_TAXID: 240292; SOURCE 4 STRAIN: PCC 7937; SOURCE 5 GENE: YP_324688.1, AVA_4194; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE SUGAR PHOSPHATE ISOMERASE/EPIMERASE, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 2QW5 1 SEQADV HETSYN REVDAT 7 29-JUL-20 2QW5 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 24-JUL-19 2QW5 1 REMARK LINK REVDAT 5 25-OCT-17 2QW5 1 REMARK REVDAT 4 13-JUL-11 2QW5 1 VERSN REVDAT 3 28-JUL-10 2QW5 1 TITLE KEYWDS REVDAT 2 24-FEB-09 2QW5 1 VERSN REVDAT 1 04-SEP-07 2QW5 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE SUGAR PHOSPHATE JRNL TITL 2 ISOMERASE/EPIMERASE (YP_324688.1) FROM ANABAENA VARIABILIS JRNL TITL 3 ATCC 29413 AT 1.78 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 71600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3610 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4458 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 229 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5256 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 1.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.321 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5527 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3803 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7542 ; 1.711 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9303 ; 1.380 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 4.242 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;34.548 ;24.457 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 931 ;11.659 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;13.049 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 822 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6114 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1098 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1065 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3860 ; 0.147 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2720 ; 0.164 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2597 ; 0.074 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 519 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.124 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.095 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 111 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 45 ; 0.102 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3817 ; 2.289 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1305 ; 0.563 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5428 ; 2.825 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2487 ; 5.382 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2099 ; 7.218 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. RESIDUES 0-5 IN CHAIN A AND 0-6 IN CHAIN B ARE DISORDERED AND REMARK 3 NOT INCLUDED IN THE MODEL. REMARK 3 4. ZN IONS ARE MODELED BASED ON THE METAL EXCITATION SCAN. REMARK 3 5. A GLYCEROL MOLECULE FROM THE CRYO SOLUTION IS MODELED. REMARK 3 6. A LIGAND MOLECULE XYLOSE IS MODELED IN EACH MONOMER. REMARK 4 REMARK 4 2QW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97939 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71702 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 42.108 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M CACL2, 20.0% PEG 3350, REMARK 280 NO BUFFER PH 5.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.08600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.11900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.11900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.04300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.11900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.11900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 156.12900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.11900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.11900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.04300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.11900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.11900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 156.12900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 104.08600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION REMARK 300 ON BURIED SURFACE AREA. REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC REMARK 300 UNIT WHICH CONSISTS OF 2 CHAINS. AUTHORS STATE THAT REMARK 300 THE EBI/PISA ANALYSIS SUPPORTS THE ASSIGNMENT OF A REMARK 300 TETRAMER AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10040 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 208.17200 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 208.17200 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 208.17200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 SER A 333 REMARK 465 LYS A 334 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 SER B 333 REMARK 465 LYS B 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 206 CD CE NZ REMARK 470 GLU B 227 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 252 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 103 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 130 -69.00 -106.27 REMARK 500 SER A 147 -129.42 46.31 REMARK 500 ASP A 303 -37.80 89.87 REMARK 500 GLN B 22 57.94 39.72 REMARK 500 VAL B 130 -69.07 -107.48 REMARK 500 SER B 147 -134.44 52.89 REMARK 500 ASP B 303 -2.56 75.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 XLS A 401 REMARK 610 XLS B 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 182 OE2 REMARK 620 2 ASP A 215 OD2 97.0 REMARK 620 3 GLN A 246 OE1 94.4 80.5 REMARK 620 4 GLU A 280 OE1 174.3 84.2 91.3 REMARK 620 5 HOH A 406 O 87.2 104.3 174.8 87.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 182 OE2 REMARK 620 2 GLN B 246 OE1 105.9 REMARK 620 3 GLU B 280 OE1 167.5 86.2 REMARK 620 4 HOH B 404 O 84.5 163.8 84.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375744 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2QW5 A 1 334 UNP Q3M5E3 Q3M5E3_ANAVT 1 334 DBREF 2QW5 B 1 334 UNP Q3M5E3 Q3M5E3_ANAVT 1 334 SEQADV 2QW5 GLY A 0 UNP Q3M5E3 EXPRESSION TAG SEQADV 2QW5 GLY B 0 UNP Q3M5E3 EXPRESSION TAG SEQRES 1 A 335 GLY MSE THR LYS LEU PRO ALA THR SER ASP ILE TYR ILE SEQRES 2 A 335 SER PHE PHE MSE PHE THR THR ASN LEU GLN PRO ASP ASN SEQRES 3 A 335 LEU ASP TYR ARG ARG ILE VAL VAL ALA HIS ILE LYS LYS SEQRES 4 A 335 LEU GLN ARG PHE GLY TYR SER GLY PHE GLU PHE PRO ILE SEQRES 5 A 335 ALA PRO GLY LEU PRO GLU ASN TYR ALA GLN ASP LEU GLU SEQRES 6 A 335 ASN TYR THR ASN LEU ARG HIS TYR LEU ASP SER GLU GLY SEQRES 7 A 335 LEU GLU ASN VAL LYS ILE SER THR ASN VAL GLY ALA THR SEQRES 8 A 335 ARG THR PHE ASP PRO SER SER ASN TYR PRO GLU GLN ARG SEQRES 9 A 335 GLN GLU ALA LEU GLU TYR LEU LYS SER ARG VAL ASP ILE SEQRES 10 A 335 THR ALA ALA LEU GLY GLY GLU ILE MSE MSE GLY PRO ILE SEQRES 11 A 335 VAL ILE PRO TYR GLY VAL PHE PRO THR THR ASP PHE ASN SEQRES 12 A 335 GLU PRO ILE TRP SER ASP GLU LEU GLN GLU HIS LEU LYS SEQRES 13 A 335 VAL ARG TYR ALA ASN ALA GLN PRO ILE LEU ASP LYS LEU SEQRES 14 A 335 GLY GLU TYR ALA GLU ILE LYS LYS VAL LYS LEU ALA ILE SEQRES 15 A 335 GLU PRO ILE THR HIS TRP GLU THR PRO GLY PRO ASN LYS SEQRES 16 A 335 LEU SER GLN LEU ILE GLU PHE LEU LYS GLY VAL LYS SER SEQRES 17 A 335 LYS GLN VAL GLY VAL VAL ILE ASP SER ALA HIS GLU ILE SEQRES 18 A 335 LEU ASP GLY GLU GLY PRO GLU ILE PHE LYS THR GLN VAL SEQRES 19 A 335 GLU TYR LEU ALA GLN GLN GLY ARG LEU HIS TYR VAL GLN SEQRES 20 A 335 VAL SER PRO PRO ASP ARG GLY ALA LEU HIS THR SER TRP SEQRES 21 A 335 LEU PRO TRP LYS SER PHE LEU THR PRO ILE VAL LYS VAL SEQRES 22 A 335 TYR ASP GLY PRO ILE ALA VAL GLU ILE PHE ASN ALA ILE SEQRES 23 A 335 PRO ALA PHE THR ASN SER LEU ARG LEU THR ARG ARG LYS SEQRES 24 A 335 PHE TRP ILE PRO ASP GLU ASP PRO PRO ASN GLN TYR PRO SEQRES 25 A 335 ASN ALA TYR ASP ILE ALA ASP GLU ALA ILE LYS VAL THR SEQRES 26 A 335 ARG LYS GLU LEU LYS LYS ILE GLY SER LYS SEQRES 1 B 335 GLY MSE THR LYS LEU PRO ALA THR SER ASP ILE TYR ILE SEQRES 2 B 335 SER PHE PHE MSE PHE THR THR ASN LEU GLN PRO ASP ASN SEQRES 3 B 335 LEU ASP TYR ARG ARG ILE VAL VAL ALA HIS ILE LYS LYS SEQRES 4 B 335 LEU GLN ARG PHE GLY TYR SER GLY PHE GLU PHE PRO ILE SEQRES 5 B 335 ALA PRO GLY LEU PRO GLU ASN TYR ALA GLN ASP LEU GLU SEQRES 6 B 335 ASN TYR THR ASN LEU ARG HIS TYR LEU ASP SER GLU GLY SEQRES 7 B 335 LEU GLU ASN VAL LYS ILE SER THR ASN VAL GLY ALA THR SEQRES 8 B 335 ARG THR PHE ASP PRO SER SER ASN TYR PRO GLU GLN ARG SEQRES 9 B 335 GLN GLU ALA LEU GLU TYR LEU LYS SER ARG VAL ASP ILE SEQRES 10 B 335 THR ALA ALA LEU GLY GLY GLU ILE MSE MSE GLY PRO ILE SEQRES 11 B 335 VAL ILE PRO TYR GLY VAL PHE PRO THR THR ASP PHE ASN SEQRES 12 B 335 GLU PRO ILE TRP SER ASP GLU LEU GLN GLU HIS LEU LYS SEQRES 13 B 335 VAL ARG TYR ALA ASN ALA GLN PRO ILE LEU ASP LYS LEU SEQRES 14 B 335 GLY GLU TYR ALA GLU ILE LYS LYS VAL LYS LEU ALA ILE SEQRES 15 B 335 GLU PRO ILE THR HIS TRP GLU THR PRO GLY PRO ASN LYS SEQRES 16 B 335 LEU SER GLN LEU ILE GLU PHE LEU LYS GLY VAL LYS SER SEQRES 17 B 335 LYS GLN VAL GLY VAL VAL ILE ASP SER ALA HIS GLU ILE SEQRES 18 B 335 LEU ASP GLY GLU GLY PRO GLU ILE PHE LYS THR GLN VAL SEQRES 19 B 335 GLU TYR LEU ALA GLN GLN GLY ARG LEU HIS TYR VAL GLN SEQRES 20 B 335 VAL SER PRO PRO ASP ARG GLY ALA LEU HIS THR SER TRP SEQRES 21 B 335 LEU PRO TRP LYS SER PHE LEU THR PRO ILE VAL LYS VAL SEQRES 22 B 335 TYR ASP GLY PRO ILE ALA VAL GLU ILE PHE ASN ALA ILE SEQRES 23 B 335 PRO ALA PHE THR ASN SER LEU ARG LEU THR ARG ARG LYS SEQRES 24 B 335 PHE TRP ILE PRO ASP GLU ASP PRO PRO ASN GLN TYR PRO SEQRES 25 B 335 ASN ALA TYR ASP ILE ALA ASP GLU ALA ILE LYS VAL THR SEQRES 26 B 335 ARG LYS GLU LEU LYS LYS ILE GLY SER LYS MODRES 2QW5 MSE A 16 MET SELENOMETHIONINE MODRES 2QW5 MSE A 125 MET SELENOMETHIONINE MODRES 2QW5 MSE A 126 MET SELENOMETHIONINE MODRES 2QW5 MSE B 16 MET SELENOMETHIONINE MODRES 2QW5 MSE B 125 MET SELENOMETHIONINE MODRES 2QW5 MSE B 126 MET SELENOMETHIONINE HET MSE A 16 8 HET MSE A 125 8 HET MSE A 126 8 HET MSE B 16 8 HET MSE B 125 8 HET MSE B 126 8 HET XLS A 401 8 HET ZN A 400 1 HET CL A 402 1 HET CL A 403 1 HET CL A 404 1 HET GOL A 405 6 HET XLS B 401 8 HET ZN B 400 1 HET CL B 402 1 HET CL B 403 1 HETNAM MSE SELENOMETHIONINE HETNAM XLS D-XYLOSE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN XLS D-XYLOSE (LINEAR FORM) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 XLS 2(C5 H10 O5) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 CL 5(CL 1-) FORMUL 8 GOL C3 H8 O3 FORMUL 13 HOH *690(H2 O) HELIX 1 1 PHE A 15 PHE A 17 5 3 HELIX 2 2 ASN A 25 PHE A 42 1 18 HELIX 3 3 LEU A 55 GLU A 57 5 3 HELIX 4 4 ASN A 58 GLU A 76 1 19 HELIX 5 5 TYR A 99 LEU A 120 1 22 HELIX 6 6 TRP A 146 LYS A 176 1 31 HELIX 7 7 LYS A 194 LYS A 203 1 10 HELIX 8 8 SER A 216 GLY A 223 1 8 HELIX 9 9 GLY A 225 GLY A 240 1 16 HELIX 10 10 PRO A 261 TYR A 273 1 13 HELIX 11 11 ILE A 285 ASN A 290 1 6 HELIX 12 12 ASN A 312 GLY A 332 1 21 HELIX 13 13 PHE B 15 PHE B 17 5 3 HELIX 14 14 ASN B 25 PHE B 42 1 18 HELIX 15 15 LEU B 55 GLU B 57 5 3 HELIX 16 16 ASN B 58 GLU B 76 1 19 HELIX 17 17 TYR B 99 LEU B 120 1 22 HELIX 18 18 TRP B 146 LYS B 175 1 30 HELIX 19 19 LYS B 194 GLY B 204 1 11 HELIX 20 20 SER B 216 GLY B 223 1 8 HELIX 21 21 GLY B 225 GLN B 239 1 15 HELIX 22 22 PRO B 261 TYR B 273 1 13 HELIX 23 23 ILE B 285 ASN B 290 1 6 HELIX 24 24 ASN B 312 GLY B 332 1 21 SHEET 1 A 9 ILE A 10 SER A 13 0 SHEET 2 A 9 GLY A 46 PRO A 50 1 O GLU A 48 N ILE A 12 SHEET 3 A 9 LYS A 82 ASN A 86 1 O SER A 84 N PHE A 49 SHEET 4 A 9 ILE A 124 GLY A 127 1 O MSE A 126 N THR A 85 SHEET 5 A 9 LYS A 178 ILE A 181 1 O ALA A 180 N MSE A 125 SHEET 6 A 9 VAL A 210 ASP A 215 1 O GLY A 211 N LEU A 179 SHEET 7 A 9 LEU A 242 VAL A 247 1 O GLN A 246 N ILE A 214 SHEET 8 A 9 ILE A 277 VAL A 279 1 O ALA A 278 N VAL A 247 SHEET 9 A 9 ILE A 10 SER A 13 1 N TYR A 11 O VAL A 279 SHEET 1 B 9 ILE B 10 SER B 13 0 SHEET 2 B 9 GLY B 46 PRO B 50 1 O GLU B 48 N ILE B 12 SHEET 3 B 9 LYS B 82 ASN B 86 1 O SER B 84 N PHE B 49 SHEET 4 B 9 ILE B 124 GLY B 127 1 O MSE B 126 N THR B 85 SHEET 5 B 9 LYS B 178 ILE B 181 1 O LYS B 178 N MSE B 125 SHEET 6 B 9 VAL B 210 ASP B 215 1 O GLY B 211 N LEU B 179 SHEET 7 B 9 LEU B 242 VAL B 247 1 O GLN B 246 N ILE B 214 SHEET 8 B 9 ILE B 277 VAL B 279 1 O ALA B 278 N VAL B 247 SHEET 9 B 9 ILE B 10 SER B 13 1 N TYR B 11 O VAL B 279 LINK C PHE A 15 N MSE A 16 1555 1555 1.34 LINK C MSE A 16 N PHE A 17 1555 1555 1.35 LINK C ILE A 124 N MSE A 125 1555 1555 1.34 LINK C MSE A 125 N MSE A 126 1555 1555 1.34 LINK C MSE A 126 N GLY A 127 1555 1555 1.33 LINK C PHE B 15 N MSE B 16 1555 1555 1.33 LINK C MSE B 16 N PHE B 17 1555 1555 1.33 LINK C ILE B 124 N MSE B 125 1555 1555 1.35 LINK C MSE B 125 N MSE B 126 1555 1555 1.34 LINK C MSE B 126 N GLY B 127 1555 1555 1.34 LINK OE2 GLU A 182 ZN ZN A 400 1555 1555 2.14 LINK OD2 ASP A 215 ZN ZN A 400 1555 1555 2.29 LINK OE1 GLN A 246 ZN ZN A 400 1555 1555 2.39 LINK OE1 GLU A 280 ZN ZN A 400 1555 1555 2.11 LINK ZN ZN A 400 O HOH A 406 1555 1555 2.03 LINK OE2 GLU B 182 ZN ZN B 400 1555 1555 2.13 LINK OE1 GLN B 246 ZN ZN B 400 1555 1555 2.27 LINK OE1 GLU B 280 ZN ZN B 400 1555 1555 2.22 LINK ZN ZN B 400 O HOH B 404 1555 1555 1.90 CISPEP 1 GLY A 191 PRO A 192 0 -6.05 CISPEP 2 GLY B 191 PRO B 192 0 -9.00 CRYST1 84.238 84.238 208.172 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011870 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004800 0.00000