HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 10-AUG-07 2QWV TITLE CRYSTAL STRUCTURE OF UNKNOWN FUNCTION PROTEIN VCA1059 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0217 PROTEIN VC_A1059; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: EL TOR INABA N16961; SOURCE 5 ATCC: 39315; SOURCE 6 GENE: VC_A1059; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS VIBRIO CHOLERAE, UNKNOWN FUNCTION, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,A.SATHER,S.MOY,L.FREEMAN,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 16-OCT-24 2QWV 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2QWV 1 VERSN REVDAT 1 21-AUG-07 2QWV 0 JRNL AUTH C.CHANG,A.SATHER,S.MOY,L.FREEMAN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF UNKNOWN FUNCTION PROTEIN VCA1059. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 13868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 736 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 849 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2908 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.78000 REMARK 3 B22 (A**2) : -3.78000 REMARK 3 B33 (A**2) : 5.67000 REMARK 3 B12 (A**2) : -1.89000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.670 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.328 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.262 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2957 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3996 ; 1.353 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 379 ; 5.912 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;36.047 ;24.180 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;15.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.252 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 475 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2179 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1301 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2024 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 91 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.266 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.342 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1952 ; 0.931 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3048 ; 1.463 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1086 ; 2.364 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 948 ; 3.559 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 14 REMARK 3 RESIDUE RANGE : A 51 A 61 REMARK 3 RESIDUE RANGE : A 65 A 75 REMARK 3 RESIDUE RANGE : A 103 A 118 REMARK 3 RESIDUE RANGE : A 132 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8747 75.9784 44.1561 REMARK 3 T TENSOR REMARK 3 T11: -0.1786 T22: -0.1595 REMARK 3 T33: 0.0908 T12: -0.1335 REMARK 3 T13: -0.0346 T23: 0.0454 REMARK 3 L TENSOR REMARK 3 L11: 11.6039 L22: 2.7013 REMARK 3 L33: 2.3248 L12: 4.4575 REMARK 3 L13: 0.4504 L23: -0.0452 REMARK 3 S TENSOR REMARK 3 S11: 0.0608 S12: -0.4007 S13: -0.8592 REMARK 3 S21: 0.2597 S22: -0.1776 S23: -0.5801 REMARK 3 S31: 0.6021 S32: -0.3422 S33: 0.1168 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 50 REMARK 3 RESIDUE RANGE : B 81 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6244 85.9800 41.1457 REMARK 3 T TENSOR REMARK 3 T11: -0.3004 T22: 0.1030 REMARK 3 T33: 0.2379 T12: -0.1066 REMARK 3 T13: 0.0230 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 7.1038 L22: 4.0188 REMARK 3 L33: 3.1326 L12: 5.1535 REMARK 3 L13: -2.8462 L23: -1.3178 REMARK 3 S TENSOR REMARK 3 S11: 0.2528 S12: 0.1416 S13: 0.9511 REMARK 3 S21: 0.0007 S22: -0.2112 S23: 0.8357 REMARK 3 S31: -0.0408 S32: -0.5684 S33: -0.0416 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 119 B 131 REMARK 3 RESIDUE RANGE : B 182 B 203 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3492 79.3657 43.0367 REMARK 3 T TENSOR REMARK 3 T11: -0.1358 T22: -0.0349 REMARK 3 T33: 0.2363 T12: -0.0849 REMARK 3 T13: 0.0105 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 6.3755 L22: 3.4212 REMARK 3 L33: 0.6817 L12: 3.6805 REMARK 3 L13: -0.0359 L23: -0.9607 REMARK 3 S TENSOR REMARK 3 S11: 0.1941 S12: -0.1471 S13: -1.0858 REMARK 3 S21: 0.2023 S22: -0.2735 S23: -0.7403 REMARK 3 S31: 0.1596 S32: -0.2733 S33: 0.0794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE BIJVOET DIFFERENCES WERE USED FOR REMARK 3 PHASING. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 2QWV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28834 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.25600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% TACSIMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 87.75700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.66653 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 14.21000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 87.75700 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 50.66653 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 14.21000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 87.75700 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 50.66653 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.21000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 101.33306 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.42000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 101.33306 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.42000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 101.33306 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 28.42000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ARG A 2 REMARK 465 ASN A 3 REMARK 465 SER A 77 REMARK 465 ASP A 78 REMARK 465 VAL A 79 REMARK 465 GLY A 80 REMARK 465 HIS A 159 REMARK 465 ILE A 160 REMARK 465 PRO A 161 REMARK 465 MSE A 162 REMARK 465 PRO A 163 REMARK 465 LYS A 164 REMARK 465 LYS A 165 REMARK 465 SER A 166 REMARK 465 GLY A 167 REMARK 465 ASN A 168 REMARK 465 ASP B 78 REMARK 465 VAL B 79 REMARK 465 GLY B 80 REMARK 465 ILE B 160 REMARK 465 PRO B 161 REMARK 465 MSE B 162 REMARK 465 PRO B 163 REMARK 465 LYS B 164 REMARK 465 LYS B 165 REMARK 465 SER B 166 REMARK 465 GLY B 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 SER A 14 OG REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 GLN A 47 CG CD OE1 NE2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 76 CG1 CG2 CD1 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 GLN A 105 CB CG CD OE1 NE2 REMARK 470 THR A 157 OG1 CG2 REMARK 470 SER A 169 OG REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 173 CG CD1 CD2 REMARK 470 ARG B 21 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 SER B 77 OG REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 ASN B 168 CG OD1 ND2 REMARK 470 SER B 169 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 309 O HOH B 313 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 57 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 26 99.54 -63.06 REMARK 500 SER A 48 -170.81 -174.54 REMARK 500 SER A 61 78.10 -68.90 REMARK 500 ASP A 64 -80.83 -138.27 REMARK 500 PHE A 82 -13.33 58.25 REMARK 500 THR A 117 47.60 -98.13 REMARK 500 HIS B 31 72.62 45.93 REMARK 500 ASP B 64 -95.98 -136.27 REMARK 500 ASP B 158 7.14 -66.33 REMARK 500 SER B 169 -39.10 -37.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC27114 RELATED DB: TARGETDB DBREF 2QWV A 5 205 UNP Q9KKP3 Y3859_VIBCH 1 201 DBREF 2QWV B 5 205 UNP Q9KKP3 Y3859_VIBCH 1 201 SEQADV 2QWV SER A -2 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV ASN A -1 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV ALA A 0 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV MSE A 1 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV ARG A 2 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV ASN A 3 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV THR A 4 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV SER B -2 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV ASN B -1 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV ALA B 0 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV MSE B 1 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV ARG B 2 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV ASN B 3 UNP Q9KKP3 EXPRESSION TAG SEQADV 2QWV THR B 4 UNP Q9KKP3 EXPRESSION TAG SEQRES 1 A 208 SER ASN ALA MSE ARG ASN THR MSE ARG SER PHE ILE LEU SEQRES 2 A 208 ARG ALA ARG SER ALA PRO THR ASP SER GLN ARG LEU LEU SEQRES 3 A 208 ASP GLU ILE GLY GLY LYS CYS HIS THR GLU ILE LEU ALA SEQRES 4 A 208 HIS CYS MSE MSE ASN SER LEU PHE THR ALA GLN SER HIS SEQRES 5 A 208 ARG GLU ASP VAL VAL ILE HIS LEU VAL LEU GLU SER THR SEQRES 6 A 208 ARG ASP TYR SER ARG THR ILE THR VAL GLU ALA ASN GLU SEQRES 7 A 208 ILE SER ASP VAL GLY GLY PHE HIS GLU ALA ALA LEU ILE SEQRES 8 A 208 ALA LEU LEU VAL LYS ALA LEU ASP ALA SER VAL GLY MSE SEQRES 9 A 208 GLY LYS GLU GLN THR ARG VAL VAL GLN PRO GLY LEU THR SEQRES 10 A 208 VAL ARG THR ILE SER PHE GLU ALA LEU LEU GLY GLU LEU SEQRES 11 A 208 ALA GLU HIS HIS SER LEU TYR MSE MSE ASP LYS LYS GLY SEQRES 12 A 208 ASP SER ILE ARG ASP ILE LYS ILE GLY PRO ASN PRO CYS SEQRES 13 A 208 PHE ILE LEU THR ASP HIS ILE PRO MSE PRO LYS LYS SER SEQRES 14 A 208 GLY ASN SER MSE LYS ARG LEU GLY VAL GLU LYS ILE SER SEQRES 15 A 208 LEU GLY PRO LYS MSE LEU PHE ALA SER GLN CYS VAL THR SEQRES 16 A 208 LEU ILE HIS ASN GLU ILE ASP HIS GLN GLU ALA GLY TRP SEQRES 1 B 208 SER ASN ALA MSE ARG ASN THR MSE ARG SER PHE ILE LEU SEQRES 2 B 208 ARG ALA ARG SER ALA PRO THR ASP SER GLN ARG LEU LEU SEQRES 3 B 208 ASP GLU ILE GLY GLY LYS CYS HIS THR GLU ILE LEU ALA SEQRES 4 B 208 HIS CYS MSE MSE ASN SER LEU PHE THR ALA GLN SER HIS SEQRES 5 B 208 ARG GLU ASP VAL VAL ILE HIS LEU VAL LEU GLU SER THR SEQRES 6 B 208 ARG ASP TYR SER ARG THR ILE THR VAL GLU ALA ASN GLU SEQRES 7 B 208 ILE SER ASP VAL GLY GLY PHE HIS GLU ALA ALA LEU ILE SEQRES 8 B 208 ALA LEU LEU VAL LYS ALA LEU ASP ALA SER VAL GLY MSE SEQRES 9 B 208 GLY LYS GLU GLN THR ARG VAL VAL GLN PRO GLY LEU THR SEQRES 10 B 208 VAL ARG THR ILE SER PHE GLU ALA LEU LEU GLY GLU LEU SEQRES 11 B 208 ALA GLU HIS HIS SER LEU TYR MSE MSE ASP LYS LYS GLY SEQRES 12 B 208 ASP SER ILE ARG ASP ILE LYS ILE GLY PRO ASN PRO CYS SEQRES 13 B 208 PHE ILE LEU THR ASP HIS ILE PRO MSE PRO LYS LYS SER SEQRES 14 B 208 GLY ASN SER MSE LYS ARG LEU GLY VAL GLU LYS ILE SER SEQRES 15 B 208 LEU GLY PRO LYS MSE LEU PHE ALA SER GLN CYS VAL THR SEQRES 16 B 208 LEU ILE HIS ASN GLU ILE ASP HIS GLN GLU ALA GLY TRP MODRES 2QWV MSE A 5 MET SELENOMETHIONINE MODRES 2QWV MSE A 39 MET SELENOMETHIONINE MODRES 2QWV MSE A 40 MET SELENOMETHIONINE MODRES 2QWV MSE A 101 MET SELENOMETHIONINE MODRES 2QWV MSE A 135 MET SELENOMETHIONINE MODRES 2QWV MSE A 136 MET SELENOMETHIONINE MODRES 2QWV MSE A 170 MET SELENOMETHIONINE MODRES 2QWV MSE A 184 MET SELENOMETHIONINE MODRES 2QWV MSE B 1 MET SELENOMETHIONINE MODRES 2QWV MSE B 5 MET SELENOMETHIONINE MODRES 2QWV MSE B 39 MET SELENOMETHIONINE MODRES 2QWV MSE B 40 MET SELENOMETHIONINE MODRES 2QWV MSE B 101 MET SELENOMETHIONINE MODRES 2QWV MSE B 135 MET SELENOMETHIONINE MODRES 2QWV MSE B 136 MET SELENOMETHIONINE MODRES 2QWV MSE B 170 MET SELENOMETHIONINE MODRES 2QWV MSE B 184 MET SELENOMETHIONINE HET MSE A 5 8 HET MSE A 39 8 HET MSE A 40 8 HET MSE A 101 8 HET MSE A 135 8 HET MSE A 136 8 HET MSE A 170 8 HET MSE A 184 8 HET MSE B 1 8 HET MSE B 5 8 HET MSE B 39 8 HET MSE B 40 8 HET MSE B 101 8 HET MSE B 135 8 HET MSE B 136 8 HET MSE B 170 8 HET MSE B 184 8 HET ACY A 301 4 HET ACY B 302 4 HETNAM MSE SELENOMETHIONINE HETNAM ACY ACETIC ACID FORMUL 1 MSE 17(C5 H11 N O2 SE) FORMUL 3 ACY 2(C2 H4 O2) FORMUL 5 HOH *40(H2 O) HELIX 1 1 ASP A 18 GLU A 25 1 8 HELIX 2 2 THR A 32 PHE A 44 1 13 HELIX 3 3 HIS A 83 SER A 98 1 16 HELIX 4 4 SER A 119 GLU A 129 1 11 HELIX 5 5 PHE A 186 GLY A 204 1 19 HELIX 6 6 ASP B 18 GLU B 25 1 8 HELIX 7 7 THR B 32 PHE B 44 1 13 HELIX 8 8 HIS B 83 ALA B 97 1 15 HELIX 9 9 SER B 119 ALA B 128 1 10 HELIX 10 10 ARG B 144 ILE B 146 5 3 HELIX 11 11 ASN B 168 LEU B 173 1 6 HELIX 12 12 PHE B 186 GLY B 204 1 19 SHEET 1 A 9 THR A 106 GLN A 110 0 SHEET 2 A 9 LEU A 113 ARG A 116 -1 O VAL A 115 N ARG A 107 SHEET 3 A 9 ARG A 67 GLU A 72 -1 N THR A 68 O ARG A 116 SHEET 4 A 9 VAL A 53 SER A 61 -1 N LEU A 59 O ARG A 67 SHEET 5 A 9 ARG A 6 PRO A 16 1 N PHE A 8 O HIS A 56 SHEET 6 A 9 PRO A 152 LEU A 156 1 O LEU A 156 N ILE A 9 SHEET 7 A 9 SER A 132 MSE A 136 1 N SER A 132 O CYS A 153 SHEET 8 A 9 GLU A 176 SER A 179 1 O ILE A 178 N MSE A 135 SHEET 9 A 9 ASP A 141 SER A 142 1 N ASP A 141 O SER A 179 SHEET 1 B 9 THR B 106 GLN B 110 0 SHEET 2 B 9 LEU B 113 ARG B 116 -1 O LEU B 113 N VAL B 109 SHEET 3 B 9 ARG B 67 GLU B 72 -1 N THR B 68 O ARG B 116 SHEET 4 B 9 VAL B 53 SER B 61 -1 N LEU B 57 O ILE B 69 SHEET 5 B 9 ARG B 6 PRO B 16 1 N LEU B 10 O VAL B 58 SHEET 6 B 9 PRO B 152 THR B 157 1 O LEU B 156 N ILE B 9 SHEET 7 B 9 SER B 132 MSE B 136 1 N TYR B 134 O ILE B 155 SHEET 8 B 9 GLU B 176 SER B 179 1 O ILE B 178 N MSE B 135 SHEET 9 B 9 ASP B 141 SER B 142 1 N ASP B 141 O SER B 179 LINK C THR A 4 N MSE A 5 1555 1555 1.33 LINK C MSE A 5 N ARG A 6 1555 1555 1.33 LINK C CYS A 38 N MSE A 39 1555 1555 1.34 LINK C MSE A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N ASN A 41 1555 1555 1.33 LINK C GLY A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N GLY A 102 1555 1555 1.34 LINK C TYR A 134 N MSE A 135 1555 1555 1.33 LINK C MSE A 135 N MSE A 136 1555 1555 1.33 LINK C MSE A 136 N ASP A 137 1555 1555 1.33 LINK C SER A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N LYS A 171 1555 1555 1.33 LINK C LYS A 183 N MSE A 184 1555 1555 1.32 LINK C MSE A 184 N LEU A 185 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N ARG B 2 1555 1555 1.32 LINK C THR B 4 N MSE B 5 1555 1555 1.33 LINK C MSE B 5 N ARG B 6 1555 1555 1.33 LINK C CYS B 38 N MSE B 39 1555 1555 1.33 LINK C MSE B 39 N MSE B 40 1555 1555 1.33 LINK C MSE B 40 N ASN B 41 1555 1555 1.33 LINK C GLY B 100 N MSE B 101 1555 1555 1.33 LINK C MSE B 101 N GLY B 102 1555 1555 1.33 LINK C TYR B 134 N MSE B 135 1555 1555 1.32 LINK C MSE B 135 N MSE B 136 1555 1555 1.32 LINK C MSE B 136 N ASP B 137 1555 1555 1.33 LINK C SER B 169 N MSE B 170 1555 1555 1.34 LINK C MSE B 170 N LYS B 171 1555 1555 1.33 LINK C LYS B 183 N MSE B 184 1555 1555 1.33 LINK C MSE B 184 N LEU B 185 1555 1555 1.33 SITE 1 AC1 4 LYS A 138 SER A 179 LEU A 180 LYS A 183 SITE 1 AC2 4 MSE B 136 LEU B 180 LYS B 183 LEU B 185 CRYST1 175.514 175.514 42.630 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005698 0.003289 0.000000 0.00000 SCALE2 0.000000 0.006579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023458 0.00000