data_2QWY # _entry.id 2QWY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2QWY pdb_00002qwy 10.2210/pdb2qwy/pdb NDB UR0125 ? ? RCSB RCSB044148 ? ? WWPDB D_1000044148 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-01-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 7 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 8 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 10 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 11 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 13 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 14 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 15 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 16 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 17 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 18 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2QWY _pdbx_database_status.recvd_initial_deposition_date 2007-08-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gilbert, S.D.' 1 'Rambo, R.P.' 2 'Van Tyne, D.' 3 'Batey, R.T.' 4 # _citation.id primary _citation.title 'Structure of the SAM-II riboswitch bound to S-adenosylmethionine.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 15 _citation.page_first 177 _citation.page_last 182 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18204466 _citation.pdbx_database_id_DOI 10.1038/nsmb.1371 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gilbert, S.D.' 1 ? primary 'Rambo, R.P.' 2 ? primary 'Van Tyne, D.' 3 ? primary 'Batey, R.T.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'SAM-II riboswitch' 16821.043 3 ? ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 6 ? ? ? ? 3 non-polymer syn 'CESIUM ION' 132.905 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 non-polymer syn S-ADENOSYLMETHIONINE 398.437 3 ? ? ? ? 6 water nat water 18.015 154 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCGCGGCGAUUUAACCGUAUUGCAGUCGCGUGAUAAAUGUAGCUAAAAAGGA _entity_poly.pdbx_seq_one_letter_code_can GCGCGGCGAUUUAACCGUAUUGCAGUCGCGUGAUAAAUGUAGCUAAAAAGGA _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 'CESIUM ION' CS 4 'MAGNESIUM ION' MG 5 S-ADENOSYLMETHIONINE SAM 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 C n 1 5 G n 1 6 G n 1 7 C n 1 8 G n 1 9 A n 1 10 U n 1 11 U n 1 12 U n 1 13 A n 1 14 A n 1 15 C n 1 16 C n 1 17 G n 1 18 U n 1 19 A n 1 20 U n 1 21 U n 1 22 G n 1 23 C n 1 24 A n 1 25 G n 1 26 U n 1 27 C n 1 28 G n 1 29 C n 1 30 G n 1 31 U n 1 32 G n 1 33 A n 1 34 U n 1 35 A n 1 36 A n 1 37 A n 1 38 U n 1 39 G n 1 40 U n 1 41 A n 1 42 G n 1 43 C n 1 44 U n 1 45 A n 1 46 A n 1 47 A n 1 48 A n 1 49 A n 1 50 G n 1 51 G n 1 52 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;The sequence was engineered based on the SAM-II riboswitch found upstream of the metX gene derived from a Sargasso Sea environmental sequence (Env12). ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CS non-polymer . 'CESIUM ION' ? 'Cs 1' 132.905 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G GUA A . n A 1 2 C 2 2 2 C CYT A . n A 1 3 G 3 3 3 G GUA A . n A 1 4 C 4 4 4 C CYT A . n A 1 5 G 5 5 5 G GUA A . n A 1 6 G 6 6 6 G GUA A . n A 1 7 C 7 7 7 C CYT A . n A 1 8 G 8 8 8 G GUA A . n A 1 9 A 9 9 9 A ADE A . n A 1 10 U 10 10 10 U URI A . n A 1 11 U 11 11 11 U URI A . n A 1 12 U 12 12 12 U URI A . n A 1 13 A 13 13 13 A ADE A . n A 1 14 A 14 14 14 A ADE A . n A 1 15 C 15 15 15 C CYT A . n A 1 16 C 16 16 16 C CYT A . n A 1 17 G 17 17 17 G GUA A . n A 1 18 U 18 18 18 U URI A . n A 1 19 A 19 19 19 A ADE A . n A 1 20 U 20 20 20 U URI A . n A 1 21 U 21 21 21 U URI A . n A 1 22 G 22 22 22 G GUA A . n A 1 23 C 23 23 23 C CYT A . n A 1 24 A 24 24 24 A ADE A . n A 1 25 G 25 25 25 G GUA A . n A 1 26 U 26 26 26 U URI A . n A 1 27 C 27 27 27 C CYT A . n A 1 28 G 28 28 28 G GUA A . n A 1 29 C 29 29 29 C CYT A . n A 1 30 G 30 30 30 G GUA A . n A 1 31 U 31 31 31 U URI A . n A 1 32 G 32 32 32 G GUA A . n A 1 33 A 33 33 33 A ADE A . n A 1 34 U 34 34 34 U URI A . n A 1 35 A 35 35 35 A ADE A . n A 1 36 A 36 36 36 A ADE A . n A 1 37 A 37 37 37 A ADE A . n A 1 38 U 38 38 38 U URI A . n A 1 39 G 39 39 39 G GUA A . n A 1 40 U 40 40 40 U URI A . n A 1 41 A 41 41 41 A ADE A . n A 1 42 G 42 42 42 G GUA A . n A 1 43 C 43 43 43 C CYT A . n A 1 44 U 44 44 44 U URI A . n A 1 45 A 45 45 45 A ADE A . n A 1 46 A 46 46 46 A ADE A . n A 1 47 A 47 47 47 A ADE A . n A 1 48 A 48 48 48 A ADE A . n A 1 49 A 49 49 49 A ADE A . n A 1 50 G 50 50 50 G GUA A . n A 1 51 G 51 51 51 G GUA A . n A 1 52 A 52 52 52 A ADE A . n B 1 1 G 1 1 201 G GUA B . n B 1 2 C 2 2 202 C CYT B . n B 1 3 G 3 3 203 G GUA B . n B 1 4 C 4 4 204 C CYT B . n B 1 5 G 5 5 205 G GUA B . n B 1 6 G 6 6 206 G GUA B . n B 1 7 C 7 7 207 C CYT B . n B 1 8 G 8 8 208 G GUA B . n B 1 9 A 9 9 209 A ADE B . n B 1 10 U 10 10 210 U URI B . n B 1 11 U 11 11 211 U URI B . n B 1 12 U 12 12 212 U URI B . n B 1 13 A 13 13 213 A ADE B . n B 1 14 A 14 14 214 A ADE B . n B 1 15 C 15 15 215 C CYT B . n B 1 16 C 16 16 216 C CYT B . n B 1 17 G 17 17 217 G GUA B . n B 1 18 U 18 18 218 U URI B . n B 1 19 A 19 19 219 A ADE B . n B 1 20 U 20 20 220 U URI B . n B 1 21 U 21 21 221 U URI B . n B 1 22 G 22 22 222 G GUA B . n B 1 23 C 23 23 223 C CYT B . n B 1 24 A 24 24 224 A ADE B . n B 1 25 G 25 25 225 G GUA B . n B 1 26 U 26 26 226 U URI B . n B 1 27 C 27 27 227 C CYT B . n B 1 28 G 28 28 228 G GUA B . n B 1 29 C 29 29 229 C CYT B . n B 1 30 G 30 30 230 G GUA B . n B 1 31 U 31 31 231 U URI B . n B 1 32 G 32 32 232 G GUA B . n B 1 33 A 33 33 233 A ADE B . n B 1 34 U 34 34 234 U URI B . n B 1 35 A 35 35 235 A ADE B . n B 1 36 A 36 36 236 A ADE B . n B 1 37 A 37 37 237 A ADE B . n B 1 38 U 38 38 238 U URI B . n B 1 39 G 39 39 239 G GUA B . n B 1 40 U 40 40 240 U URI B . n B 1 41 A 41 41 241 A ADE B . n B 1 42 G 42 42 242 G GUA B . n B 1 43 C 43 43 243 C CYT B . n B 1 44 U 44 44 244 U URI B . n B 1 45 A 45 45 245 A ADE B . n B 1 46 A 46 46 246 A ADE B . n B 1 47 A 47 47 247 A ADE B . n B 1 48 A 48 48 248 A ADE B . n B 1 49 A 49 49 249 A ADE B . n B 1 50 G 50 50 250 G GUA B . n B 1 51 G 51 51 251 G GUA B . n B 1 52 A 52 52 252 A ADE B . n C 1 1 G 1 1 401 G GUA C . n C 1 2 C 2 2 402 C CYT C . n C 1 3 G 3 3 403 G GUA C . n C 1 4 C 4 4 404 C CYT C . n C 1 5 G 5 5 405 G GUA C . n C 1 6 G 6 6 406 G GUA C . n C 1 7 C 7 7 407 C CYT C . n C 1 8 G 8 8 408 G GUA C . n C 1 9 A 9 9 409 A ADE C . n C 1 10 U 10 10 410 U URI C . n C 1 11 U 11 11 411 U URI C . n C 1 12 U 12 12 412 U URI C . n C 1 13 A 13 13 413 A ADE C . n C 1 14 A 14 14 414 A ADE C . n C 1 15 C 15 15 415 C CYT C . n C 1 16 C 16 16 416 C CYT C . n C 1 17 G 17 17 417 G GUA C . n C 1 18 U 18 18 418 U URI C . n C 1 19 A 19 19 419 A ADE C . n C 1 20 U 20 20 420 U URI C . n C 1 21 U 21 21 421 U URI C . n C 1 22 G 22 22 422 G GUA C . n C 1 23 C 23 23 423 C CYT C . n C 1 24 A 24 24 424 A ADE C . n C 1 25 G 25 25 425 G GUA C . n C 1 26 U 26 26 426 U URI C . n C 1 27 C 27 27 427 C CYT C . n C 1 28 G 28 28 428 G GUA C . n C 1 29 C 29 29 429 C CYT C . n C 1 30 G 30 30 430 G GUA C . n C 1 31 U 31 31 431 U URI C . n C 1 32 G 32 32 432 G GUA C . n C 1 33 A 33 33 433 A ADE C . n C 1 34 U 34 34 434 U URI C . n C 1 35 A 35 35 435 A ADE C . n C 1 36 A 36 36 436 A ADE C . n C 1 37 A 37 37 437 A ADE C . n C 1 38 U 38 38 438 U URI C . n C 1 39 G 39 39 439 G GUA C . n C 1 40 U 40 40 440 U URI C . n C 1 41 A 41 41 441 A ADE C . n C 1 42 G 42 42 442 G GUA C . n C 1 43 C 43 43 443 C CYT C . n C 1 44 U 44 44 444 U URI C . n C 1 45 A 45 45 445 A ADE C . n C 1 46 A 46 46 446 A ADE C . n C 1 47 A 47 47 447 A ADE C . n C 1 48 A 48 48 448 A ADE C . n C 1 49 A 49 49 449 A ADE C . n C 1 50 G 50 50 450 G GUA C . n C 1 51 G 51 51 451 G GUA C . n C 1 52 A 52 52 452 A ADE C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 1 0 1 PO4 GUA A . E 2 PO4 1 53 52 PO4 ADE A . F 3 CS 1 101 101 CS CS A . G 4 MG 1 102 2 MG E A . H 5 SAM 1 100 100 SAM SAM A . I 2 PO4 1 0 201 PO4 GUA B . J 2 PO4 1 53 252 PO4 ADE B . K 5 SAM 1 300 300 SAM SAM B . L 2 PO4 1 0 401 PO4 GUA C . M 2 PO4 1 53 452 PO4 ADE C . N 3 CS 1 501 501 CS CS C . O 5 SAM 1 500 500 SAM SAM C . P 6 HOH 1 1000 1000 HOH HOH A . P 6 HOH 2 1003 1003 HOH HOH A . P 6 HOH 3 1009 1009 HOH HOH A . P 6 HOH 4 1011 1011 HOH HOH A . P 6 HOH 5 1013 1013 HOH HOH A . P 6 HOH 6 1016 1016 HOH HOH A . P 6 HOH 7 1017 1017 HOH HOH A . P 6 HOH 8 1020 1020 HOH HOH A . P 6 HOH 9 1021 1021 HOH HOH A . P 6 HOH 10 1022 1022 HOH HOH A . P 6 HOH 11 1023 1023 HOH HOH A . P 6 HOH 12 1026 1026 HOH HOH A . P 6 HOH 13 1027 1027 HOH HOH A . P 6 HOH 14 1031 1031 HOH HOH A . P 6 HOH 15 1033 1033 HOH HOH A . P 6 HOH 16 1034 1034 HOH HOH A . P 6 HOH 17 1036 1036 HOH HOH A . P 6 HOH 18 1043 1043 HOH HOH A . P 6 HOH 19 1046 1046 HOH HOH A . P 6 HOH 20 1048 1048 HOH HOH A . P 6 HOH 21 1050 1050 HOH HOH A . P 6 HOH 22 1053 1053 HOH HOH A . P 6 HOH 23 1054 1054 HOH HOH A . P 6 HOH 24 1058 1058 HOH HOH A . P 6 HOH 25 1061 1061 HOH HOH A . P 6 HOH 26 1062 1062 HOH HOH A . P 6 HOH 27 1063 1063 HOH HOH A . P 6 HOH 28 1065 1065 HOH HOH A . P 6 HOH 29 1067 1067 HOH HOH A . P 6 HOH 30 1069 1069 HOH HOH A . P 6 HOH 31 1072 1072 HOH HOH A . P 6 HOH 32 1073 1073 HOH HOH A . P 6 HOH 33 1080 1080 HOH HOH A . P 6 HOH 34 1082 1082 HOH HOH A . P 6 HOH 35 1084 1084 HOH HOH A . P 6 HOH 36 1085 1085 HOH HOH A . P 6 HOH 37 1086 1086 HOH HOH A . P 6 HOH 38 1087 1087 HOH HOH A . P 6 HOH 39 1089 1089 HOH HOH A . P 6 HOH 40 1093 1093 HOH HOH A . P 6 HOH 41 1099 1099 HOH HOH A . P 6 HOH 42 1104 1104 HOH HOH A . P 6 HOH 43 1107 1107 HOH HOH A . P 6 HOH 44 1109 1109 HOH HOH A . P 6 HOH 45 1115 1115 HOH HOH A . P 6 HOH 46 1119 1119 HOH HOH A . P 6 HOH 47 1122 1122 HOH HOH A . P 6 HOH 48 1123 1123 HOH HOH A . P 6 HOH 49 1125 1125 HOH HOH A . P 6 HOH 50 1126 1126 HOH HOH A . P 6 HOH 51 1127 1127 HOH HOH A . P 6 HOH 52 1128 1128 HOH HOH A . P 6 HOH 53 1132 1132 HOH HOH A . P 6 HOH 54 1137 1137 HOH HOH A . P 6 HOH 55 1138 1138 HOH HOH A . P 6 HOH 56 1139 1139 HOH HOH A . P 6 HOH 57 1140 1140 HOH HOH A . P 6 HOH 58 1141 1141 HOH HOH A . P 6 HOH 59 1145 1145 HOH HOH A . P 6 HOH 60 1149 1149 HOH HOH A . P 6 HOH 61 1153 1153 HOH HOH A . P 6 HOH 62 1155 1155 HOH HOH A . P 6 HOH 63 1156 1156 HOH HOH A . P 6 HOH 64 1162 1162 HOH HOH A . P 6 HOH 65 1163 1163 HOH HOH A . P 6 HOH 66 1164 1164 HOH HOH A . Q 6 HOH 1 1002 1002 HOH HOH B . Q 6 HOH 2 1004 1004 HOH HOH B . Q 6 HOH 3 1005 1005 HOH HOH B . Q 6 HOH 4 1006 1006 HOH HOH B . Q 6 HOH 5 1008 1008 HOH HOH B . Q 6 HOH 6 1014 1014 HOH HOH B . Q 6 HOH 7 1015 1015 HOH HOH B . Q 6 HOH 8 1018 1018 HOH HOH B . Q 6 HOH 9 1030 1030 HOH HOH B . Q 6 HOH 10 1032 1032 HOH HOH B . Q 6 HOH 11 1035 1035 HOH HOH B . Q 6 HOH 12 1038 1038 HOH HOH B . Q 6 HOH 13 1039 1039 HOH HOH B . Q 6 HOH 14 1040 1040 HOH HOH B . Q 6 HOH 15 1041 1041 HOH HOH B . Q 6 HOH 16 1045 1045 HOH HOH B . Q 6 HOH 17 1047 1047 HOH HOH B . Q 6 HOH 18 1052 1052 HOH HOH B . Q 6 HOH 19 1056 1056 HOH HOH B . Q 6 HOH 20 1059 1059 HOH HOH B . Q 6 HOH 21 1064 1064 HOH HOH B . Q 6 HOH 22 1068 1068 HOH HOH B . Q 6 HOH 23 1071 1071 HOH HOH B . Q 6 HOH 24 1074 1074 HOH HOH B . Q 6 HOH 25 1079 1079 HOH HOH B . Q 6 HOH 26 1081 1081 HOH HOH B . Q 6 HOH 27 1088 1088 HOH HOH B . Q 6 HOH 28 1092 1092 HOH HOH B . Q 6 HOH 29 1094 1094 HOH HOH B . Q 6 HOH 30 1095 1095 HOH HOH B . Q 6 HOH 31 1100 1100 HOH HOH B . Q 6 HOH 32 1102 1102 HOH HOH B . Q 6 HOH 33 1105 1105 HOH HOH B . Q 6 HOH 34 1106 1106 HOH HOH B . Q 6 HOH 35 1108 1108 HOH HOH B . Q 6 HOH 36 1110 1110 HOH HOH B . Q 6 HOH 37 1114 1114 HOH HOH B . Q 6 HOH 38 1118 1118 HOH HOH B . Q 6 HOH 39 1121 1121 HOH HOH B . Q 6 HOH 40 1129 1129 HOH HOH B . Q 6 HOH 41 1130 1130 HOH HOH B . Q 6 HOH 42 1131 1131 HOH HOH B . Q 6 HOH 43 1134 1134 HOH HOH B . Q 6 HOH 44 1135 1135 HOH HOH B . Q 6 HOH 45 1136 1136 HOH HOH B . Q 6 HOH 46 1142 1142 HOH HOH B . Q 6 HOH 47 1146 1146 HOH HOH B . Q 6 HOH 48 1147 1147 HOH HOH B . Q 6 HOH 49 1148 1148 HOH HOH B . Q 6 HOH 50 1150 1150 HOH HOH B . Q 6 HOH 51 1157 1157 HOH HOH B . Q 6 HOH 52 1158 1158 HOH HOH B . Q 6 HOH 53 1160 1160 HOH HOH B . Q 6 HOH 54 1161 1161 HOH HOH B . R 6 HOH 1 1007 1007 HOH HOH C . R 6 HOH 2 1012 1012 HOH HOH C . R 6 HOH 3 1024 1024 HOH HOH C . R 6 HOH 4 1028 1028 HOH HOH C . R 6 HOH 5 1029 1029 HOH HOH C . R 6 HOH 6 1037 1037 HOH HOH C . R 6 HOH 7 1042 1042 HOH HOH C . R 6 HOH 8 1049 1049 HOH HOH C . R 6 HOH 9 1051 1051 HOH HOH C . R 6 HOH 10 1055 1055 HOH HOH C . R 6 HOH 11 1057 1057 HOH HOH C . R 6 HOH 12 1060 1060 HOH HOH C . R 6 HOH 13 1066 1066 HOH HOH C . R 6 HOH 14 1070 1070 HOH HOH C . R 6 HOH 15 1075 1075 HOH HOH C . R 6 HOH 16 1076 1076 HOH HOH C . R 6 HOH 17 1077 1077 HOH HOH C . R 6 HOH 18 1078 1078 HOH HOH C . R 6 HOH 19 1083 1083 HOH HOH C . R 6 HOH 20 1090 1090 HOH HOH C . R 6 HOH 21 1091 1091 HOH HOH C . R 6 HOH 22 1096 1096 HOH HOH C . R 6 HOH 23 1097 1097 HOH HOH C . R 6 HOH 24 1098 1098 HOH HOH C . R 6 HOH 25 1111 1111 HOH HOH C . R 6 HOH 26 1112 1112 HOH HOH C . R 6 HOH 27 1117 1117 HOH HOH C . R 6 HOH 28 1120 1120 HOH HOH C . R 6 HOH 29 1143 1143 HOH HOH C . R 6 HOH 30 1144 1144 HOH HOH C . R 6 HOH 31 1151 1151 HOH HOH C . R 6 HOH 32 1152 1152 HOH HOH C . R 6 HOH 33 1154 1154 HOH HOH C . R 6 HOH 34 1159 1159 HOH HOH C . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.2 ? 1 CrystalClear 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SOLVE phasing . ? 5 # _cell.entry_id 2QWY _cell.length_a 115.258 _cell.length_b 48.095 _cell.length_c 109.617 _cell.angle_alpha 90.00 _cell.angle_beta 108.25 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QWY _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2QWY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_percent_sol 56.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;640 mM Ammonium Acetate, 10% PEG 1000, 10 mM Barium Chloride, 50 mM Sodium Cacodylate, 8 mM Cobalt Hexaammine Chloride. Micro-seeded., pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'Sodium Cacodylate' ? ? ? 1 2 1 'Ammonium Acetate' ? ? ? 1 3 1 'PEG 1000' ? ? ? 1 4 1 'Barium Chloride' ? ? ? 1 5 1 'Cobalt Hexaammine Chloride' ? ? ? 1 6 2 'Sodium Cacodylate' ? ? ? 1 7 2 'Ammonium Acetate' ? ? ? 1 8 2 'PEG 1000' ? ? ? 1 9 2 'Barium Chloride' ? ? ? 1 10 2 'Cobalt Hexaammine Chloride' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector ? _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2007-04-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Nickel Filter' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2QWY _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.8 _reflns.number_obs 26866 _reflns.number_all 27442 _reflns.percent_possible_obs 97.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.061 _reflns.pdbx_netI_over_sigmaI 31.9 _reflns.B_iso_Wilson_estimate 129.5 _reflns.pdbx_redundancy 7.8 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.9 _reflns_shell.percent_possible_all 94.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.349 _reflns_shell.meanI_over_sigI_obs 5.0 _reflns_shell.pdbx_redundancy 7.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4033 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2QWY _refine.ls_number_reflns_obs 26866 _refine.ls_number_reflns_all 26866 _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1022121.53 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.90 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 97.9 _refine.ls_R_factor_obs 0.206 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.206 _refine.ls_R_factor_R_free 0.263 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.2 _refine.ls_number_reflns_R_free 1924 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 65.6 _refine.aniso_B[1][1] 34.88 _refine.aniso_B[2][2] -5.03 _refine.aniso_B[3][3] -29.85 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 23.73 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.25 _refine.solvent_model_param_bsol 9.21319 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2QWY _refine_analyze.Luzzati_coordinate_error_obs 0.40 _refine_analyze.Luzzati_sigma_a_obs 0.62 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.50 _refine_analyze.Luzzati_sigma_a_free 0.62 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3354 _refine_hist.pdbx_number_atoms_ligand 105 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 3613 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 19.90 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.0 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.40 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.97 _refine_ls_shell.number_reflns_R_work 4033 _refine_ls_shell.R_factor_R_work 0.407 _refine_ls_shell.percent_reflns_obs 94.8 _refine_ls_shell.R_factor_R_free 0.408 _refine_ls_shell.R_factor_R_free_error 0.023 _refine_ls_shell.percent_reflns_R_free 7.4 _refine_ls_shell.number_reflns_R_free 324 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep_revise4.param dna-rna_rep_revise4.top 'X-RAY DIFFRACTION' 3 water_rep.param water_rep.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 sam7.param sam7.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2QWY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2QWY _struct.title 'SAM-II riboswitch bound to S-adenosylmethionine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QWY _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'mRNA, riboswitch, SAM, S-adenosylmethionine, AdoMet, RNA-ligand complex, double helix, pseudoknot, base triple, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 2 ? J N N 2 ? K N N 5 ? L N N 2 ? M N N 2 ? N N N 3 ? O N N 5 ? P N N 6 ? Q N N 6 ? R N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2QWY _struct_ref.pdbx_db_accession 2QWY _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GCGCGGCGAUUUAACCGUAUUGCAGUCGCGUGAUAAAUGUAGCUAAAAAGGA _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2QWY A 1 ? 52 ? 2QWY 1 ? 52 ? 1 52 2 1 2QWY B 1 ? 52 ? 2QWY 1 ? 52 ? 1 52 3 1 2QWY C 1 ? 52 ? 2QWY 1 ? 52 ? 1 52 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,F,G,H,P 2 1 B,I,J,K,Q 3 1 C,L,M,N,O,R # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ;The deposited coordinates contain all information corresponding to one biologically relevant unit repeated three times according to the number of RNA-ligand complexes observed in the asymmetric unit. ; # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? D PO4 . P ? ? ? 1_555 A G 1 OP3 ? ? A PO4 0 A G 1 1_555 ? ? ? ? ? ? ? 1.647 ? ? covale2 covale none ? A A 52 "O2'" ? ? ? 1_555 E PO4 . P ? ? A A 52 A PO4 53 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale3 covale one ? A A 52 "O3'" ? ? ? 1_555 E PO4 . P ? ? A A 52 A PO4 53 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale4 covale none ? I PO4 . P ? ? ? 1_555 B G 1 OP3 ? ? B PO4 0 B G 1 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale5 covale none ? B A 52 "O2'" ? ? ? 1_555 J PO4 . P ? ? B A 52 B PO4 53 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale6 covale one ? B A 52 "O3'" ? ? ? 1_555 J PO4 . P ? ? B A 52 B PO4 53 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale7 covale none ? L PO4 . P ? ? ? 1_555 C G 1 OP3 ? ? C PO4 0 C G 1 1_555 ? ? ? ? ? ? ? 1.636 ? ? covale8 covale none ? C A 52 "O2'" ? ? ? 1_555 M PO4 . P ? ? C A 52 C PO4 53 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale9 covale one ? C A 52 "O3'" ? ? ? 1_555 M PO4 . P ? ? C A 52 C PO4 53 1_555 ? ? ? ? ? ? ? 1.611 ? ? hydrog1 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 1 B C 2 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 1 N1 ? ? ? 1_555 B G 30 O6 ? ? A G 1 B G 30 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A G 1 N2 ? ? ? 1_555 B G 30 N7 ? ? A G 1 B G 30 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 2 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 2 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 2 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 2 B G 1 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog8 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 3 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 3 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 3 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 4 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 4 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 4 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 5 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 5 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 5 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 5 N3 ? ? ? 1_555 A A 35 N6 ? ? A G 5 A A 35 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog18 hydrog ? ? A G 5 N2 ? ? ? 1_555 A A 36 N1 ? ? A G 5 A A 36 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog19 hydrog ? ? A G 6 N1 ? ? ? 1_555 A U 26 O2 ? ? A G 6 A U 26 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A G 6 O6 ? ? ? 1_555 A U 26 N3 ? ? A G 6 A U 26 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 7 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 7 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 7 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 23 N4 ? ? A G 8 A C 23 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog25 hydrog ? ? A G 8 N1 ? ? ? 1_555 A G 42 O6 ? ? A G 8 A G 42 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A G 8 N2 ? ? ? 1_555 A G 42 N7 ? ? A G 8 A G 42 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 22 O6 ? ? A A 9 A G 22 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog28 hydrog ? ? A A 9 N1 ? ? ? 1_555 A C 43 N4 ? ? A A 9 A C 43 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog29 hydrog ? ? A U 10 N3 ? ? ? 1_555 A U 44 O4 ? ? A U 10 A U 44 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog30 hydrog ? ? A U 11 N3 ? ? ? 1_555 A U 44 O4 ? ? A U 11 A U 44 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog31 hydrog ? ? A U 11 O2 ? ? ? 1_555 A U 44 N3 ? ? A U 11 A U 44 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog32 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 45 N7 ? ? A U 11 A A 45 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog33 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 45 N6 ? ? A U 11 A A 45 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog34 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 46 N7 ? ? A U 12 A A 46 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog35 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 46 N6 ? ? A U 12 A A 46 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog36 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 18 O4 ? ? A A 13 A U 18 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog37 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 51 N1 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 51 O6 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 51 N2 ? ? A C 15 A G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 16 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 16 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 16 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 49 N7 ? ? A G 17 A A 49 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog44 hydrog ? ? A G 17 N3 ? ? ? 1_555 A A 49 N6 ? ? A G 17 A A 49 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog45 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 48 N6 ? ? A U 18 A A 48 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog46 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 49 N6 ? ? A U 18 A A 49 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog47 hydrog ? ? A A 19 N6 ? ? ? 1_555 A A 47 N3 ? ? A A 19 A A 47 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog48 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 46 N1 ? ? A U 20 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A U 20 O4 ? ? ? 1_555 A A 46 N6 ? ? A U 20 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 45 N1 ? ? A U 21 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A U 21 O4 ? ? ? 1_555 A A 45 N6 ? ? A U 21 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 22 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 22 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 22 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 23 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 23 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 23 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A A 24 N1 ? ? ? 1_555 A U 40 N3 ? ? A A 24 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A A 24 N6 ? ? ? 1_555 A U 40 O4 ? ? A A 24 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 24 N3 ? ? ? 1_555 A A 41 N6 ? ? A A 24 A A 41 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog61 hydrog ? ? A G 28 N2 ? ? ? 1_555 A A 35 N1 ? ? A G 28 A A 35 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog62 hydrog ? ? A C 29 O2 ? ? ? 1_555 A A 33 N6 ? ? A C 29 A A 33 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog63 hydrog ? ? A G 30 N7 ? ? ? 1_555 B G 1 N2 ? ? A G 30 B G 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog64 hydrog ? ? A G 30 O6 ? ? ? 1_555 B G 1 N1 ? ? A G 30 B G 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog65 hydrog ? ? A U 31 N3 ? ? ? 1_555 B U 31 O4 ? ? A U 31 B U 31 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog66 hydrog ? ? A U 31 O4 ? ? ? 1_555 B U 31 N3 ? ? A U 31 B U 31 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog67 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 30 N1 ? ? B C 2 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 30 O6 ? ? B C 2 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 30 N2 ? ? B C 2 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 29 N3 ? ? B G 3 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 29 O2 ? ? B G 3 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 29 N4 ? ? B G 3 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 28 N1 ? ? B C 4 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 28 O6 ? ? B C 4 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 28 N2 ? ? B C 4 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 27 N3 ? ? B G 5 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 27 O2 ? ? B G 5 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 27 N4 ? ? B G 5 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B G 5 N2 ? ? ? 1_555 B A 36 N1 ? ? B G 5 B A 36 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog80 hydrog ? ? B G 6 N1 ? ? ? 1_555 B U 26 O2 ? ? B G 6 B U 26 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog81 hydrog ? ? B G 6 O6 ? ? ? 1_555 B U 26 N3 ? ? B G 6 B U 26 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog82 hydrog ? ? B C 7 N3 ? ? ? 1_555 B G 25 N1 ? ? B C 7 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B C 7 N4 ? ? ? 1_555 B G 25 O6 ? ? B C 7 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B C 7 O2 ? ? ? 1_555 B G 25 N2 ? ? B C 7 B G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 8 O6 ? ? ? 1_555 B C 23 N4 ? ? B G 8 B C 23 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog86 hydrog ? ? B G 8 N1 ? ? ? 1_555 B G 42 O6 ? ? B G 8 B G 42 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog87 hydrog ? ? B G 8 N2 ? ? ? 1_555 B G 42 N7 ? ? B G 8 B G 42 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog88 hydrog ? ? B A 9 N1 ? ? ? 1_555 B C 43 N4 ? ? B A 9 B C 43 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog89 hydrog ? ? B U 10 N3 ? ? ? 1_555 B U 44 O4 ? ? B U 10 B U 44 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog90 hydrog ? ? B U 11 N3 ? ? ? 1_555 B A 45 N7 ? ? B U 11 B A 45 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog91 hydrog ? ? B U 11 O4 ? ? ? 1_555 B A 45 N6 ? ? B U 11 B A 45 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog92 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 46 N7 ? ? B U 12 B A 46 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog93 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 46 N6 ? ? B U 12 B A 46 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog94 hydrog ? ? B A 13 N6 ? ? ? 1_555 B U 18 O4 ? ? B A 13 B U 18 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog95 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 51 N1 ? ? B C 15 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 51 O6 ? ? B C 15 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 51 N2 ? ? B C 15 B G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 50 N1 ? ? B C 16 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 50 O6 ? ? B C 16 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 50 N2 ? ? B C 16 B G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B U 18 N3 ? ? ? 1_555 B A 48 N7 ? ? B U 18 B A 48 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog102 hydrog ? ? B U 18 O2 ? ? ? 1_555 B A 48 N6 ? ? B U 18 B A 48 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog103 hydrog ? ? B A 19 N6 ? ? ? 1_555 B A 47 N3 ? ? B A 19 B A 47 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog104 hydrog ? ? B U 20 N3 ? ? ? 1_555 B A 46 N1 ? ? B U 20 B A 46 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog105 hydrog ? ? B U 21 N3 ? ? ? 1_555 B A 45 N1 ? ? B U 21 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B U 21 O4 ? ? ? 1_555 B A 45 N6 ? ? B U 21 B A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B U 21 O4 ? ? ? 1_555 B A 46 N6 ? ? B U 21 B A 46 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog108 hydrog ? ? B G 22 N1 ? ? ? 1_555 B C 43 N3 ? ? B G 22 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 22 N2 ? ? ? 1_555 B C 43 O2 ? ? B G 22 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 22 O6 ? ? ? 1_555 B C 43 N4 ? ? B G 22 B C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B C 23 N3 ? ? ? 1_555 B G 42 N1 ? ? B C 23 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? B C 23 N4 ? ? ? 1_555 B G 42 O6 ? ? B C 23 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B C 23 O2 ? ? ? 1_555 B G 42 N2 ? ? B C 23 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B A 24 N1 ? ? ? 1_555 B U 40 N3 ? ? B A 24 B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B A 24 N6 ? ? ? 1_555 B U 40 O4 ? ? B A 24 B U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? B C 29 O2 ? ? ? 1_555 B A 33 N6 ? ? B C 29 B A 33 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog117 hydrog ? ? C C 2 N3 ? ? ? 1_555 C G 30 N1 ? ? C C 2 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? C C 2 N4 ? ? ? 1_555 C G 30 O6 ? ? C C 2 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? C C 2 O2 ? ? ? 1_555 C G 30 N2 ? ? C C 2 C G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? C G 3 N1 ? ? ? 1_555 C C 29 N3 ? ? C G 3 C C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? C G 3 N2 ? ? ? 1_555 C C 29 O2 ? ? C G 3 C C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? C G 3 O6 ? ? ? 1_555 C C 29 N4 ? ? C G 3 C C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? C C 4 N3 ? ? ? 1_555 C G 28 N1 ? ? C C 4 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? C C 4 N4 ? ? ? 1_555 C G 28 O6 ? ? C C 4 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? C C 4 O2 ? ? ? 1_555 C G 28 N2 ? ? C C 4 C G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? C G 5 N1 ? ? ? 1_555 C C 27 N3 ? ? C G 5 C C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? C G 5 N2 ? ? ? 1_555 C C 27 O2 ? ? C G 5 C C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? C G 5 O6 ? ? ? 1_555 C C 27 N4 ? ? C G 5 C C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? C G 5 N3 ? ? ? 1_555 C A 35 N6 ? ? C G 5 C A 35 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog130 hydrog ? ? C G 5 N2 ? ? ? 1_555 C A 36 N1 ? ? C G 5 C A 36 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog131 hydrog ? ? C G 6 N1 ? ? ? 1_555 C U 26 O2 ? ? C G 6 C U 26 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog132 hydrog ? ? C G 6 O6 ? ? ? 1_555 C U 26 N3 ? ? C G 6 C U 26 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog133 hydrog ? ? C G 6 N2 ? ? ? 1_555 C U 38 O2 ? ? C G 6 C U 38 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog134 hydrog ? ? C C 7 N3 ? ? ? 1_555 C G 25 N1 ? ? C C 7 C G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog135 hydrog ? ? C C 7 N4 ? ? ? 1_555 C G 25 O6 ? ? C C 7 C G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog136 hydrog ? ? C C 7 O2 ? ? ? 1_555 C G 25 N2 ? ? C C 7 C G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? C G 8 O6 ? ? ? 1_555 C C 23 N4 ? ? C G 8 C C 23 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog138 hydrog ? ? C G 8 N1 ? ? ? 1_555 C G 42 O6 ? ? C G 8 C G 42 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog139 hydrog ? ? C G 8 N2 ? ? ? 1_555 C G 42 N7 ? ? C G 8 C G 42 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog140 hydrog ? ? C A 9 N1 ? ? ? 1_555 C C 43 N4 ? ? C A 9 C C 43 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog141 hydrog ? ? C U 10 N3 ? ? ? 1_555 C U 44 O4 ? ? C U 10 C U 44 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog142 hydrog ? ? C U 11 N3 ? ? ? 1_555 C A 45 N7 ? ? C U 11 C A 45 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog143 hydrog ? ? C U 11 O4 ? ? ? 1_555 C A 45 N6 ? ? C U 11 C A 45 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog144 hydrog ? ? C U 12 N3 ? ? ? 1_555 C A 46 N7 ? ? C U 12 C A 46 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog145 hydrog ? ? C U 12 O4 ? ? ? 1_555 C A 46 N6 ? ? C U 12 C A 46 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog146 hydrog ? ? C A 13 N6 ? ? ? 1_555 C U 18 O4 ? ? C A 13 C U 18 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog147 hydrog ? ? C C 15 N3 ? ? ? 1_555 C G 51 N1 ? ? C C 15 C G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? C C 15 N4 ? ? ? 1_555 C G 51 O6 ? ? C C 15 C G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog149 hydrog ? ? C C 15 O2 ? ? ? 1_555 C G 51 N2 ? ? C C 15 C G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog150 hydrog ? ? C C 16 N3 ? ? ? 1_555 C G 50 N1 ? ? C C 16 C G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog151 hydrog ? ? C C 16 N4 ? ? ? 1_555 C G 50 O6 ? ? C C 16 C G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog152 hydrog ? ? C C 16 O2 ? ? ? 1_555 C G 50 N2 ? ? C C 16 C G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog153 hydrog ? ? C G 17 N3 ? ? ? 1_555 C A 49 N6 ? ? C G 17 C A 49 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog154 hydrog ? ? C U 18 N3 ? ? ? 1_555 C A 48 N7 ? ? C U 18 C A 48 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog155 hydrog ? ? C U 18 O2 ? ? ? 1_555 C A 48 N6 ? ? C U 18 C A 48 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog156 hydrog ? ? C A 19 N6 ? ? ? 1_555 C A 47 N3 ? ? C A 19 C A 47 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog157 hydrog ? ? C U 20 N3 ? ? ? 1_555 C A 46 N1 ? ? C U 20 C A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog158 hydrog ? ? C U 20 O4 ? ? ? 1_555 C A 46 N6 ? ? C U 20 C A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog159 hydrog ? ? C U 21 N3 ? ? ? 1_555 C A 45 N1 ? ? C U 21 C A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog160 hydrog ? ? C U 21 O4 ? ? ? 1_555 C A 45 N6 ? ? C U 21 C A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog161 hydrog ? ? C G 22 N1 ? ? ? 1_555 C C 43 N3 ? ? C G 22 C C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog162 hydrog ? ? C G 22 N2 ? ? ? 1_555 C C 43 O2 ? ? C G 22 C C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog163 hydrog ? ? C G 22 O6 ? ? ? 1_555 C C 43 N4 ? ? C G 22 C C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog164 hydrog ? ? C C 23 N3 ? ? ? 1_555 C G 42 N1 ? ? C C 23 C G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog165 hydrog ? ? C C 23 N4 ? ? ? 1_555 C G 42 O6 ? ? C C 23 C G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog166 hydrog ? ? C C 23 O2 ? ? ? 1_555 C G 42 N2 ? ? C C 23 C G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog167 hydrog ? ? C A 24 N1 ? ? ? 1_555 C U 40 N3 ? ? C A 24 C U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog168 hydrog ? ? C A 24 N6 ? ? ? 1_555 C U 40 O4 ? ? C A 24 C U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog169 hydrog ? ? C G 28 N2 ? ? ? 1_555 C A 35 N1 ? ? C G 28 C A 35 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog170 hydrog ? ? C C 29 O2 ? ? ? 1_555 C A 33 N6 ? ? C C 29 C A 33 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC2 Software A PO4 0 ? 2 'BINDING SITE FOR RESIDUE PO4 A 0' AC8 Software A PO4 53 ? 1 'BINDING SITE FOR RESIDUE PO4 A 53' AC9 Software A CS 101 ? 4 'BINDING SITE FOR RESIDUE CS A 101' AD1 Software A MG 102 ? 2 'BINDING SITE FOR RESIDUE MG A 102' AD2 Software A SAM 100 ? 13 'BINDING SITE FOR RESIDUE SAM A 100' AD3 Software B PO4 0 ? 3 'BINDING SITE FOR RESIDUE PO4 B 0' AD4 Software B PO4 53 ? 2 'BINDING SITE FOR RESIDUE PO4 B 53' AD5 Software B SAM 300 ? 13 'BINDING SITE FOR RESIDUE SAM B 300' AD6 Software C PO4 0 ? 1 'BINDING SITE FOR RESIDUE PO4 C 0' BC1 Software C PO4 53 ? 2 'BINDING SITE FOR RESIDUE PO4 C 53' BC2 Software C CS 501 ? 4 'BINDING SITE FOR RESIDUE CS C 501' BC3 Software C SAM 500 ? 13 'BINDING SITE FOR RESIDUE SAM C 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC2 2 G A 1 ? G A 1 . ? 1_555 ? 2 AC2 2 MG G . ? MG A 102 . ? 1_555 ? 3 AC8 1 A A 52 ? A A 52 . ? 1_555 ? 4 AC9 4 G A 5 ? G A 5 . ? 1_555 ? 5 AC9 4 G A 6 ? G A 6 . ? 1_555 ? 6 AC9 4 G A 25 ? G A 25 . ? 1_555 ? 7 AC9 4 U A 26 ? U A 26 . ? 1_555 ? 8 AD1 2 PO4 D . ? PO4 A 0 . ? 1_555 ? 9 AD1 2 PO4 I . ? PO4 B 0 . ? 1_555 ? 10 AD2 13 U A 10 ? U A 10 . ? 1_555 ? 11 AD2 13 U A 11 ? U A 11 . ? 1_555 ? 12 AD2 13 U A 12 ? U A 12 . ? 1_555 ? 13 AD2 13 U A 18 ? U A 18 . ? 1_555 ? 14 AD2 13 U A 20 ? U A 20 . ? 1_555 ? 15 AD2 13 U A 21 ? U A 21 . ? 1_555 ? 16 AD2 13 G A 22 ? G A 22 . ? 1_555 ? 17 AD2 13 U A 44 ? U A 44 . ? 1_555 ? 18 AD2 13 A A 45 ? A A 45 . ? 1_555 ? 19 AD2 13 A A 47 ? A A 47 . ? 1_555 ? 20 AD2 13 HOH P . ? HOH A 1053 . ? 1_555 ? 21 AD2 13 HOH P . ? HOH A 1156 . ? 1_555 ? 22 AD2 13 HOH P . ? HOH A 1164 . ? 1_555 ? 23 AD3 3 MG G . ? MG A 102 . ? 1_555 ? 24 AD3 3 G B 1 ? G B 1 . ? 1_555 ? 25 AD3 3 HOH Q . ? HOH B 1004 . ? 1_555 ? 26 AD4 2 C A 15 ? C A 15 . ? 1_554 ? 27 AD4 2 A B 52 ? A B 52 . ? 1_555 ? 28 AD5 13 A B 9 ? A B 9 . ? 1_555 ? 29 AD5 13 U B 10 ? U B 10 . ? 1_555 ? 30 AD5 13 U B 11 ? U B 11 . ? 1_555 ? 31 AD5 13 U B 12 ? U B 12 . ? 1_555 ? 32 AD5 13 G B 17 ? G B 17 . ? 1_555 ? 33 AD5 13 U B 18 ? U B 18 . ? 1_555 ? 34 AD5 13 U B 20 ? U B 20 . ? 1_555 ? 35 AD5 13 U B 21 ? U B 21 . ? 1_555 ? 36 AD5 13 G B 22 ? G B 22 . ? 1_555 ? 37 AD5 13 U B 44 ? U B 44 . ? 1_555 ? 38 AD5 13 A B 45 ? A B 45 . ? 1_555 ? 39 AD5 13 A B 47 ? A B 47 . ? 1_555 ? 40 AD5 13 HOH Q . ? HOH B 1161 . ? 1_555 ? 41 AD6 1 G C 1 ? G C 1 . ? 1_555 ? 42 BC1 2 C C 15 ? C C 15 . ? 2_656 ? 43 BC1 2 A C 52 ? A C 52 . ? 1_555 ? 44 BC2 4 G C 5 ? G C 5 . ? 1_555 ? 45 BC2 4 G C 6 ? G C 6 . ? 1_555 ? 46 BC2 4 G C 25 ? G C 25 . ? 1_555 ? 47 BC2 4 U C 26 ? U C 26 . ? 1_555 ? 48 BC3 13 A C 9 ? A C 9 . ? 1_555 ? 49 BC3 13 U C 10 ? U C 10 . ? 1_555 ? 50 BC3 13 U C 11 ? U C 11 . ? 1_555 ? 51 BC3 13 U C 12 ? U C 12 . ? 1_555 ? 52 BC3 13 U C 18 ? U C 18 . ? 1_555 ? 53 BC3 13 A C 19 ? A C 19 . ? 1_555 ? 54 BC3 13 U C 20 ? U C 20 . ? 1_555 ? 55 BC3 13 U C 21 ? U C 21 . ? 1_555 ? 56 BC3 13 G C 22 ? G C 22 . ? 1_555 ? 57 BC3 13 U C 44 ? U C 44 . ? 1_555 ? 58 BC3 13 A C 45 ? A C 45 . ? 1_555 ? 59 BC3 13 A C 47 ? A C 47 . ? 1_555 ? 60 BC3 13 HOH R . ? HOH C 1057 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O2'" A G 39 ? ? O A HOH 1000 ? ? 2.03 2 1 "C2'" A A 52 ? ? P A PO4 53 ? ? 2.04 3 1 "C2'" B A 52 ? ? P B PO4 53 ? ? 2.05 4 1 O6 B G 6 ? ? O B HOH 1005 ? ? 2.17 5 1 O B HOH 1002 ? ? O B HOH 1106 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 U _pdbx_validate_symm_contact.auth_seq_id_1 18 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O4 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 U _pdbx_validate_symm_contact.auth_seq_id_2 34 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_556 _pdbx_validate_symm_contact.dist 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 B G 1 ? ? P B G 1 ? ? OP2 B G 1 ? ? 109.88 119.60 -9.72 1.50 N 2 1 OP1 C G 1 ? ? P C G 1 ? ? OP2 C G 1 ? ? 110.35 119.60 -9.25 1.50 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U B 10 ? ? 0.070 'SIDE CHAIN' 2 1 U B 34 ? ? 0.067 'SIDE CHAIN' # _pdbx_entry_details.entry_id 2QWY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;EACH RNA MONOMER CONTAINS A 5'-DIPHOSPHATE AND A 2',3'-CYCLIC PHOSPHATE. THESE RESIDUES HAVE BEEN SEPARATED INTO STANDARD MONOPHOSPHATE NECLEOTIDE AND INDIVIDUAL PHOSPHATE DURING ENTRY PROCESSING AT THE PROTEIN DATA BANK, AND THE LINK RECORDS HAVE BEEN BUILT TO INDICATE THE CONNECTIONS. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CS CS CS N N 73 G OP3 O N N 74 G P P N N 75 G OP1 O N N 76 G OP2 O N N 77 G "O5'" O N N 78 G "C5'" C N N 79 G "C4'" C N R 80 G "O4'" O N N 81 G "C3'" C N S 82 G "O3'" O N N 83 G "C2'" C N R 84 G "O2'" O N N 85 G "C1'" C N R 86 G N9 N Y N 87 G C8 C Y N 88 G N7 N Y N 89 G C5 C Y N 90 G C6 C N N 91 G O6 O N N 92 G N1 N N N 93 G C2 C N N 94 G N2 N N N 95 G N3 N N N 96 G C4 C Y N 97 G HOP3 H N N 98 G HOP2 H N N 99 G "H5'" H N N 100 G "H5''" H N N 101 G "H4'" H N N 102 G "H3'" H N N 103 G "HO3'" H N N 104 G "H2'" H N N 105 G "HO2'" H N N 106 G "H1'" H N N 107 G H8 H N N 108 G H1 H N N 109 G H21 H N N 110 G H22 H N N 111 HOH O O N N 112 HOH H1 H N N 113 HOH H2 H N N 114 MG MG MG N N 115 PO4 P P N N 116 PO4 O1 O N N 117 PO4 O2 O N N 118 PO4 O3 O N N 119 PO4 O4 O N N 120 SAM N N N N 121 SAM CA C N S 122 SAM C C N N 123 SAM O O N N 124 SAM OXT O N N 125 SAM CB C N N 126 SAM CG C N N 127 SAM SD S N S 128 SAM CE C N N 129 SAM "C5'" C N N 130 SAM "C4'" C N S 131 SAM "O4'" O N N 132 SAM "C3'" C N S 133 SAM "O3'" O N N 134 SAM "C2'" C N R 135 SAM "O2'" O N N 136 SAM "C1'" C N R 137 SAM N9 N Y N 138 SAM C8 C Y N 139 SAM N7 N Y N 140 SAM C5 C Y N 141 SAM C6 C Y N 142 SAM N6 N N N 143 SAM N1 N Y N 144 SAM C2 C Y N 145 SAM N3 N Y N 146 SAM C4 C Y N 147 SAM HN1 H N N 148 SAM HN2 H N N 149 SAM HA H N N 150 SAM HB1 H N N 151 SAM HB2 H N N 152 SAM HG1 H N N 153 SAM HG2 H N N 154 SAM HE1 H N N 155 SAM HE2 H N N 156 SAM HE3 H N N 157 SAM "H5'1" H N N 158 SAM "H5'2" H N N 159 SAM "H4'" H N N 160 SAM "H3'" H N N 161 SAM "HO3'" H N N 162 SAM "H2'" H N N 163 SAM "HO2'" H N N 164 SAM "H1'" H N N 165 SAM H8 H N N 166 SAM HN61 H N N 167 SAM HN62 H N N 168 SAM H2 H N N 169 U OP3 O N N 170 U P P N N 171 U OP1 O N N 172 U OP2 O N N 173 U "O5'" O N N 174 U "C5'" C N N 175 U "C4'" C N R 176 U "O4'" O N N 177 U "C3'" C N S 178 U "O3'" O N N 179 U "C2'" C N R 180 U "O2'" O N N 181 U "C1'" C N R 182 U N1 N N N 183 U C2 C N N 184 U O2 O N N 185 U N3 N N N 186 U C4 C N N 187 U O4 O N N 188 U C5 C N N 189 U C6 C N N 190 U HOP3 H N N 191 U HOP2 H N N 192 U "H5'" H N N 193 U "H5''" H N N 194 U "H4'" H N N 195 U "H3'" H N N 196 U "HO3'" H N N 197 U "H2'" H N N 198 U "HO2'" H N N 199 U "H1'" H N N 200 U H3 H N N 201 U H5 H N N 202 U H6 H N N 203 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 PO4 P O1 doub N N 118 PO4 P O2 sing N N 119 PO4 P O3 sing N N 120 PO4 P O4 sing N N 121 SAM N CA sing N N 122 SAM N HN1 sing N N 123 SAM N HN2 sing N N 124 SAM CA C sing N N 125 SAM CA CB sing N N 126 SAM CA HA sing N N 127 SAM C O doub N N 128 SAM C OXT sing N N 129 SAM CB CG sing N N 130 SAM CB HB1 sing N N 131 SAM CB HB2 sing N N 132 SAM CG SD sing N N 133 SAM CG HG1 sing N N 134 SAM CG HG2 sing N N 135 SAM SD CE sing N N 136 SAM SD "C5'" sing N N 137 SAM CE HE1 sing N N 138 SAM CE HE2 sing N N 139 SAM CE HE3 sing N N 140 SAM "C5'" "C4'" sing N N 141 SAM "C5'" "H5'1" sing N N 142 SAM "C5'" "H5'2" sing N N 143 SAM "C4'" "O4'" sing N N 144 SAM "C4'" "C3'" sing N N 145 SAM "C4'" "H4'" sing N N 146 SAM "O4'" "C1'" sing N N 147 SAM "C3'" "O3'" sing N N 148 SAM "C3'" "C2'" sing N N 149 SAM "C3'" "H3'" sing N N 150 SAM "O3'" "HO3'" sing N N 151 SAM "C2'" "O2'" sing N N 152 SAM "C2'" "C1'" sing N N 153 SAM "C2'" "H2'" sing N N 154 SAM "O2'" "HO2'" sing N N 155 SAM "C1'" N9 sing N N 156 SAM "C1'" "H1'" sing N N 157 SAM N9 C8 sing Y N 158 SAM N9 C4 sing Y N 159 SAM C8 N7 doub Y N 160 SAM C8 H8 sing N N 161 SAM N7 C5 sing Y N 162 SAM C5 C6 sing Y N 163 SAM C5 C4 doub Y N 164 SAM C6 N6 sing N N 165 SAM C6 N1 doub Y N 166 SAM N6 HN61 sing N N 167 SAM N6 HN62 sing N N 168 SAM N1 C2 sing Y N 169 SAM C2 N3 doub Y N 170 SAM C2 H2 sing N N 171 SAM N3 C4 sing Y N 172 U OP3 P sing N N 173 U OP3 HOP3 sing N N 174 U P OP1 doub N N 175 U P OP2 sing N N 176 U P "O5'" sing N N 177 U OP2 HOP2 sing N N 178 U "O5'" "C5'" sing N N 179 U "C5'" "C4'" sing N N 180 U "C5'" "H5'" sing N N 181 U "C5'" "H5''" sing N N 182 U "C4'" "O4'" sing N N 183 U "C4'" "C3'" sing N N 184 U "C4'" "H4'" sing N N 185 U "O4'" "C1'" sing N N 186 U "C3'" "O3'" sing N N 187 U "C3'" "C2'" sing N N 188 U "C3'" "H3'" sing N N 189 U "O3'" "HO3'" sing N N 190 U "C2'" "O2'" sing N N 191 U "C2'" "C1'" sing N N 192 U "C2'" "H2'" sing N N 193 U "O2'" "HO2'" sing N N 194 U "C1'" N1 sing N N 195 U "C1'" "H1'" sing N N 196 U N1 C2 sing N N 197 U N1 C6 sing N N 198 U C2 O2 doub N N 199 U C2 N3 sing N N 200 U N3 C4 sing N N 201 U N3 H3 sing N N 202 U C4 O4 doub N N 203 U C4 C5 sing N N 204 U C5 C6 doub N N 205 U C5 H5 sing N N 206 U C6 H6 sing N N 207 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2QWY 'double helix' 2QWY 'a-form double helix' 2QWY 'bulge loop' 2QWY 'mismatched base pair' 2QWY 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 15 1_555 A G 51 1_555 0.171 0.110 -0.378 2.349 -5.893 6.967 1 A_C15:G51_A A 15 ? A 51 ? 19 1 1 A C 16 1_555 A G 50 1_555 -0.695 0.139 -0.010 -5.362 -10.216 7.351 2 A_C16:G50_A A 16 ? A 50 ? 19 1 1 A G 17 1_555 A A 49 1_555 7.060 -3.624 0.018 -1.588 -0.642 0.123 3 A_G17:A49_A A 17 ? A 49 ? 11 9 1 A U 18 1_555 A A 13 1_555 -3.896 2.451 -0.047 -18.948 -35.099 -127.416 4 A_U18:A13_A A 18 ? A 13 ? ? ? 1 A A 19 1_555 A A 47 1_555 -6.863 -3.862 0.140 -1.705 4.740 -6.496 5 A_A19:A47_A A 19 ? A 47 ? ? 6 1 A U 20 1_555 A A 46 1_555 -0.260 -0.302 -0.129 10.727 11.258 11.097 6 A_U20:A46_A A 20 ? A 46 ? 20 1 1 A U 21 1_555 A A 45 1_555 -0.213 -0.008 -0.392 20.306 16.337 8.258 7 A_U21:A45_A A 21 ? A 45 ? 20 1 1 A U 10 1_555 A U 44 1_555 0.515 2.676 -0.825 18.886 0.256 -100.312 8 A_U10:U44_A A 10 ? A 44 ? ? ? 1 A G 22 1_555 A C 43 1_555 -0.197 -0.080 0.461 8.957 -10.121 4.890 9 A_G22:C43_A A 22 ? A 43 ? 19 1 1 A C 23 1_555 A G 42 1_555 0.900 0.024 0.248 5.035 -8.083 8.470 10 A_C23:G42_A A 23 ? A 42 ? 19 1 1 A A 24 1_555 A U 40 1_555 -0.117 0.160 0.227 8.563 0.924 0.231 11 A_A24:U40_A A 24 ? A 40 ? 20 1 1 A G 25 1_555 A C 7 1_555 -0.356 0.053 -0.124 -6.917 -18.974 6.105 12 A_G25:C7_A A 25 ? A 7 ? 19 1 1 A U 26 1_555 A G 6 1_555 1.999 -0.527 0.108 3.433 -15.618 3.971 13 A_U26:G6_A A 26 ? A 6 ? 28 1 1 A C 27 1_555 A G 5 1_555 0.095 -0.264 -0.311 -0.505 -2.440 2.017 14 A_C27:G5_A A 27 ? A 5 ? 19 1 1 A G 28 1_555 A C 4 1_555 -0.447 -0.263 0.656 13.724 0.466 1.416 15 A_G28:C4_A A 28 ? A 4 ? 19 1 1 A C 29 1_555 A G 3 1_555 0.208 -0.328 0.177 3.924 -15.660 1.470 16 A_C29:G3_A A 29 ? A 3 ? 19 1 1 A G 30 1_555 A C 2 1_555 0.072 0.046 0.020 -0.908 -5.099 2.025 17 A_G30:C2_A A 30 ? A 2 ? 19 1 1 B C 2 1_555 B G 30 1_555 0.581 0.008 -0.121 0.621 -3.184 -0.185 18 B_C2:G30_B B 2 ? B 30 ? 19 1 1 B G 3 1_555 B C 29 1_555 -0.584 -0.112 -0.262 -4.629 -26.369 7.243 19 B_G3:C29_B B 3 ? B 29 ? 19 1 1 B C 4 1_555 B G 28 1_555 -0.173 -0.183 0.016 -4.197 -13.657 -0.693 20 B_C4:G28_B B 4 ? B 28 ? 19 1 1 B G 5 1_555 B C 27 1_555 0.390 -0.034 0.115 3.320 -7.821 0.600 21 B_G5:C27_B B 5 ? B 27 ? 19 1 1 B G 6 1_555 B U 26 1_555 -1.496 -0.526 0.468 -1.291 -8.679 4.968 22 B_G6:U26_B B 6 ? B 26 ? 28 1 1 B C 7 1_555 B G 25 1_555 0.386 -0.076 -0.062 4.367 -14.982 5.108 23 B_C7:G25_B B 7 ? B 25 ? 19 1 1 B U 40 1_555 B A 24 1_555 0.628 -0.274 0.363 -8.908 4.971 -1.312 24 B_U40:A24_B B 40 ? B 24 ? 20 1 1 B G 42 1_555 B C 23 1_555 -0.877 0.029 0.069 -12.938 -4.046 6.207 25 B_G42:C23_B B 42 ? B 23 ? 19 1 1 B C 43 1_555 B G 22 1_555 -0.231 -0.250 0.641 -11.139 -6.248 -1.846 26 B_C43:G22_B B 43 ? B 22 ? 19 1 1 B U 44 1_555 B U 10 1_555 -0.218 -2.286 0.540 -6.049 9.668 108.337 27 B_U44:U10_B B 44 ? B 10 ? ? ? 1 B A 45 1_555 B U 21 1_555 0.533 0.060 -0.961 -23.009 20.457 -1.481 28 B_A45:U21_B B 45 ? B 21 ? 20 1 1 B A 46 1_555 B U 12 1_555 0.516 -3.037 -0.027 -3.042 -4.817 74.456 29 B_A46:U12_B B 46 ? B 12 ? 23 3 1 B A 47 1_555 B A 19 1_555 6.776 -3.801 -0.260 0.177 4.204 1.366 30 B_A47:A19_B B 47 ? B 19 ? ? 5 1 B A 13 1_555 B U 18 1_555 3.736 3.312 0.044 15.008 -5.264 -122.544 31 B_A13:U18_B B 13 ? B 18 ? ? ? 1 B G 50 1_555 B C 16 1_555 -0.144 0.108 0.523 6.739 -5.538 0.021 32 B_G50:C16_B B 50 ? B 16 ? 19 1 1 B G 51 1_555 B C 15 1_555 0.837 0.156 0.052 2.930 -8.515 3.972 33 B_G51:C15_B B 51 ? B 15 ? 19 1 1 A U 31 1_555 B U 31 1_555 -1.687 -1.825 1.276 6.542 33.642 179.054 34 A_U31:U31_B A 31 ? B 31 ? 12 1 1 C C 2 1_555 C G 30 1_555 0.443 0.013 -0.342 7.461 -6.521 2.464 35 C_C2:G30_C C 2 ? C 30 ? 19 1 1 C G 3 1_555 C C 29 1_555 -0.847 -0.041 -0.067 -4.995 -23.669 9.752 36 C_G3:C29_C C 3 ? C 29 ? 19 1 1 C C 4 1_555 C G 28 1_555 0.291 -0.268 0.719 -14.601 -9.252 -2.377 37 C_C4:G28_C C 4 ? C 28 ? 19 1 1 C G 5 1_555 C C 27 1_555 -0.098 -0.093 0.483 4.883 -11.524 0.322 38 C_G5:C27_C C 5 ? C 27 ? 19 1 1 C G 6 1_555 C U 26 1_555 -1.982 -0.457 0.168 -8.334 -9.280 5.336 39 C_G6:U26_C C 6 ? C 26 ? 28 1 1 C C 7 1_555 C G 25 1_555 0.483 -0.228 0.019 7.996 -12.424 -4.144 40 C_C7:G25_C C 7 ? C 25 ? 19 1 1 C U 40 1_555 C A 24 1_555 0.155 -0.212 0.304 -11.726 -8.560 -8.476 41 C_U40:A24_C C 40 ? C 24 ? 20 1 1 C G 42 1_555 C C 23 1_555 -0.704 -0.127 0.106 -12.579 -9.490 4.774 42 C_G42:C23_C C 42 ? C 23 ? 19 1 1 C C 43 1_555 C G 22 1_555 -0.056 -0.154 0.702 -10.970 -14.223 -1.170 43 C_C43:G22_C C 43 ? C 22 ? 19 1 1 C U 44 1_555 C U 10 1_555 -0.153 -2.543 0.373 -10.671 1.715 103.533 44 C_U44:U10_C C 44 ? C 10 ? ? ? 1 C A 45 1_555 C U 21 1_555 0.223 -0.145 -0.545 -20.191 14.290 -1.795 45 C_A45:U21_C C 45 ? C 21 ? 20 1 1 C A 46 1_555 C U 20 1_555 0.523 0.026 -0.443 -14.324 7.218 8.604 46 C_A46:U20_C C 46 ? C 20 ? 20 1 1 C A 47 1_555 C A 19 1_555 7.045 -4.223 -0.114 -2.301 0.544 -3.977 47 C_A47:A19_C C 47 ? C 19 ? ? 6 1 C A 13 1_555 C U 18 1_555 4.097 2.855 0.239 4.817 -6.252 -116.787 48 C_A13:U18_C C 13 ? C 18 ? ? ? 1 C A 49 1_555 C G 17 1_555 -7.220 -3.789 0.309 1.849 -9.625 8.198 49 C_A49:G17_C C 49 ? C 17 ? ? ? 1 C G 50 1_555 C C 16 1_555 -0.449 -0.182 0.256 3.088 -5.550 1.723 50 C_G50:C16_C C 50 ? C 16 ? 19 1 1 C G 51 1_555 C C 15 1_555 0.536 0.081 0.087 0.941 -7.278 2.432 51 C_G51:C15_C C 51 ? C 15 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 15 1_555 A G 51 1_555 A C 16 1_555 A G 50 1_555 0.224 -2.041 3.519 -2.935 7.172 25.708 -6.230 -1.232 2.814 15.671 6.413 26.832 1 AA_C15C16:G50G51_AA A 15 ? A 51 ? A 16 ? A 50 ? 1 A C 16 1_555 A G 50 1_555 A G 17 1_555 A A 49 1_555 -0.248 -0.596 3.450 -0.891 1.390 64.535 -0.620 0.193 3.441 1.302 0.834 64.554 2 AA_C16G17:A49G50_AA A 16 ? A 50 ? A 17 ? A 49 ? 1 A G 17 1_555 A A 49 1_555 A U 18 1_555 A A 13 1_555 0.081 -0.142 2.686 7.852 -21.426 44.355 1.161 0.391 2.486 -26.413 -9.680 49.616 3 AA_G17U18:A13A49_AA A 17 ? A 49 ? A 18 ? A 13 ? 1 A U 18 1_555 A A 13 1_555 A A 19 1_555 A A 47 1_555 0.842 -0.991 4.014 -4.519 20.106 -26.020 -2.884 0.440 3.879 -37.977 -8.535 -33.081 4 AA_U18A19:A47A13_AA A 18 ? A 13 ? A 19 ? A 47 ? 1 A A 19 1_555 A A 47 1_555 A U 20 1_555 A A 46 1_555 -0.173 -0.928 2.920 -4.597 6.452 53.905 -1.359 -0.057 2.805 7.074 5.040 54.441 5 AA_A19U20:A46A47_AA A 19 ? A 47 ? A 20 ? A 46 ? 1 A U 20 1_555 A A 46 1_555 A U 21 1_555 A A 45 1_555 -0.182 -1.883 3.092 -0.275 6.360 28.554 -4.950 0.307 2.621 12.695 0.550 29.241 6 AA_U20U21:A45A46_AA A 20 ? A 46 ? A 21 ? A 45 ? 1 A U 21 1_555 A A 45 1_555 A U 10 1_555 A U 44 1_555 -0.852 3.491 4.415 141.946 70.587 -4.793 -2.604 1.231 -0.603 -39.872 80.179 -158.547 7 AA_U21U10:U44A45_AA A 21 ? A 45 ? A 10 ? A 44 ? 1 A U 10 1_555 A U 44 1_555 A G 22 1_555 A C 43 1_555 -0.989 3.162 -0.627 -173.078 -33.795 -98.508 -1.629 -0.251 -0.713 16.982 -86.973 -177.615 8 AA_U10G22:C43U44_AA A 10 ? A 44 ? A 22 ? A 43 ? 1 A G 22 1_555 A C 43 1_555 A C 23 1_555 A G 42 1_555 0.874 -1.841 3.355 0.009 0.182 36.656 -2.953 -1.389 3.346 0.290 -0.014 36.656 9 AA_G22C23:G42C43_AA A 22 ? A 43 ? A 23 ? A 42 ? 1 A C 23 1_555 A G 42 1_555 A A 24 1_555 A U 40 1_555 2.587 -1.760 3.176 -4.257 -2.505 47.853 -1.973 -3.492 3.032 -3.079 5.232 48.093 10 AA_C23A24:U40G42_AA A 23 ? A 42 ? A 24 ? A 40 ? 1 A A 24 1_555 A U 40 1_555 A G 25 1_555 A C 7 1_555 1.162 -1.961 3.576 5.575 6.363 38.416 -3.727 -1.018 3.351 9.529 -8.349 39.302 11 AA_A24G25:C7U40_AA A 24 ? A 40 ? A 25 ? A 7 ? 1 A G 25 1_555 A C 7 1_555 A U 26 1_555 A G 6 1_555 0.139 -0.609 2.939 -3.548 1.684 46.648 -0.892 -0.439 2.899 2.122 4.471 46.803 12 AA_G25U26:G6C7_AA A 25 ? A 7 ? A 26 ? A 6 ? 1 A U 26 1_555 A G 6 1_555 A C 27 1_555 A G 5 1_555 0.131 -2.344 3.000 7.114 6.873 28.033 -5.788 1.000 2.335 13.661 -14.141 29.694 13 AA_U26C27:G5G6_AA A 26 ? A 6 ? A 27 ? A 5 ? 1 A C 27 1_555 A G 5 1_555 A G 28 1_555 A C 4 1_555 0.352 -0.927 2.956 -3.596 6.238 19.056 -5.010 -2.372 2.426 18.029 10.394 20.360 14 AA_C27G28:C4G5_AA A 27 ? A 5 ? A 28 ? A 4 ? 1 A G 28 1_555 A C 4 1_555 A C 29 1_555 A G 3 1_555 -0.056 -1.956 3.539 2.537 4.897 38.300 -3.581 0.410 3.263 7.417 -3.842 38.681 15 AA_G28C29:G3C4_AA A 28 ? A 4 ? A 29 ? A 3 ? 1 A C 29 1_555 A G 3 1_555 A G 30 1_555 A C 2 1_555 0.217 -2.130 3.271 6.208 11.786 31.034 -5.387 0.529 2.331 20.864 -10.990 33.707 16 AA_C29G30:C2G3_AA A 29 ? A 3 ? A 30 ? A 2 ? 1 A G 30 1_555 A C 2 1_555 B C 2 1_555 B G 30 1_555 0.094 1.278 3.484 -0.658 -6.944 -56.065 -0.926 0.059 3.607 7.356 -0.697 -56.462 17 AB_G30C2:G30C2_BA A 30 ? A 2 ? B 2 ? B 30 ? 1 B C 2 1_555 B G 30 1_555 B G 3 1_555 B C 29 1_555 0.221 -1.945 3.432 -0.806 13.878 24.468 -6.937 -0.626 2.044 29.862 1.734 28.089 18 BB_C2G3:C29G30_BB B 2 ? B 30 ? B 3 ? B 29 ? 1 B G 3 1_555 B C 29 1_555 B C 4 1_555 B G 28 1_555 0.131 -1.397 3.300 -1.924 6.019 37.919 -2.854 -0.433 3.041 9.184 2.935 38.423 19 BB_G3C4:G28C29_BB B 3 ? B 29 ? B 4 ? B 28 ? 1 B C 4 1_555 B G 28 1_555 B G 5 1_555 B C 27 1_555 -0.112 -0.747 3.301 -2.305 6.042 24.030 -3.521 -0.421 3.023 14.186 5.412 24.872 20 BB_C4G5:C27G28_BB B 4 ? B 28 ? B 5 ? B 27 ? 1 B G 5 1_555 B C 27 1_555 B G 6 1_555 B U 26 1_555 -0.033 -2.120 3.091 -4.206 3.886 30.196 -4.691 -0.685 2.782 7.377 7.984 30.722 21 BB_G5G6:U26C27_BB B 5 ? B 27 ? B 6 ? B 26 ? 1 B G 6 1_555 B U 26 1_555 B C 7 1_555 B G 25 1_555 -0.478 -1.150 3.094 6.300 5.175 39.785 -2.186 1.331 2.824 7.509 -9.141 40.579 22 BB_G6C7:G25U26_BB B 6 ? B 26 ? B 7 ? B 25 ? 1 B C 7 1_555 B G 25 1_555 B U 40 1_555 B A 24 1_555 -1.784 -1.793 3.488 -7.251 9.028 48.893 -2.804 1.551 3.344 10.734 8.621 50.163 23 BB_C7U40:A24G25_BB B 7 ? B 25 ? B 40 ? B 24 ? 1 B U 40 1_555 B A 24 1_555 B G 42 1_555 B C 23 1_555 -2.455 -1.695 3.197 4.006 -5.654 39.872 -1.832 3.990 3.147 -8.215 -5.821 40.446 24 BB_U40G42:C23A24_BB B 40 ? B 24 ? B 42 ? B 23 ? 1 B G 42 1_555 B C 23 1_555 B C 43 1_555 B G 22 1_555 -0.932 -2.004 3.158 -1.980 0.641 35.761 -3.348 1.241 3.168 1.043 3.220 35.820 25 BB_G42C43:G22C23_BB B 42 ? B 23 ? B 43 ? B 22 ? 1 B C 43 1_555 B G 22 1_555 B U 44 1_555 B U 10 1_555 1.145 0.255 3.072 0.905 -2.282 -22.100 0.143 3.289 3.033 5.929 2.352 -22.235 26 BB_C43U44:U10G22_BB B 43 ? B 22 ? B 44 ? B 10 ? 1 B U 44 1_555 B U 10 1_555 B A 45 1_555 B U 21 1_555 -1.456 -4.801 4.021 24.165 4.328 50.708 -5.387 3.068 2.735 4.749 -26.513 55.982 27 BB_U44A45:U21U10_BB B 44 ? B 10 ? B 45 ? B 21 ? 1 B A 45 1_555 B U 21 1_555 B A 46 1_555 B U 12 1_555 1.223 -0.142 2.850 -11.166 10.540 0.681 -5.418 -9.750 -0.860 60.043 63.614 15.370 28 BB_A45A46:U12U21_BB B 45 ? B 21 ? B 46 ? B 12 ? 1 B A 46 1_555 B U 12 1_555 B A 47 1_555 B A 19 1_555 -1.483 -2.061 3.273 5.434 0.580 82.346 -1.577 1.257 3.176 0.440 -4.123 82.495 29 BB_A46A47:A19U12_BB B 46 ? B 12 ? B 47 ? B 19 ? 1 B A 47 1_555 B A 19 1_555 B A 13 1_555 B U 18 1_555 -0.384 0.318 3.383 1.698 6.707 -34.399 -1.563 -0.375 3.280 -11.200 2.835 -35.067 30 BB_A47A13:U18A19_BB B 47 ? B 19 ? B 13 ? B 18 ? 1 B A 13 1_555 B U 18 1_555 B G 50 1_555 B C 16 1_555 0.860 -2.155 6.571 -5.819 -4.401 107.122 -1.222 -0.687 6.592 -2.733 3.614 107.293 31 BB_A13G50:C16U18_BB B 13 ? B 18 ? B 50 ? B 16 ? 1 B G 50 1_555 B C 16 1_555 B G 51 1_555 B C 15 1_555 0.479 -2.205 3.155 2.864 7.904 38.026 -4.178 -0.404 2.689 11.952 -4.331 38.911 32 BB_G50G51:C15C16_BB B 50 ? B 16 ? B 51 ? B 15 ? 1 C C 2 1_555 C G 30 1_555 C G 3 1_555 C C 29 1_555 0.424 -1.832 3.638 -2.879 12.729 26.274 -6.329 -1.450 2.447 26.057 5.894 29.285 33 CC_C2G3:C29G30_CC C 2 ? C 30 ? C 3 ? C 29 ? 1 C G 3 1_555 C C 29 1_555 C C 4 1_555 C G 28 1_555 -0.149 -1.222 3.414 -5.740 6.556 43.222 -2.259 -0.353 3.198 8.793 7.699 44.050 34 CC_G3C4:G28C29_CC C 3 ? C 29 ? C 4 ? C 28 ? 1 C C 4 1_555 C G 28 1_555 C G 5 1_555 C C 27 1_555 -0.025 -0.832 2.840 -0.075 2.575 20.922 -3.196 0.041 2.719 7.058 0.205 21.078 35 CC_C4G5:C27G28_CC C 4 ? C 28 ? C 5 ? C 27 ? 1 C G 5 1_555 C C 27 1_555 C G 6 1_555 C U 26 1_555 -0.119 -2.038 3.314 -0.332 8.264 29.638 -5.352 0.165 2.663 15.771 0.634 30.745 36 CC_G5G6:U26C27_CC C 5 ? C 27 ? C 6 ? C 26 ? 1 C G 6 1_555 C U 26 1_555 C C 7 1_555 C G 25 1_555 0.239 -0.923 2.749 4.094 3.632 43.307 -1.533 0.005 2.677 4.898 -5.520 43.635 37 CC_G6C7:G25U26_CC C 6 ? C 26 ? C 7 ? C 25 ? 1 C C 7 1_555 C G 25 1_555 C U 40 1_555 C A 24 1_555 -1.208 -2.116 3.613 -1.716 4.534 39.679 -3.658 1.555 3.407 6.650 2.517 39.962 38 CC_C7U40:A24G25_CC C 7 ? C 25 ? C 40 ? C 24 ? 1 C U 40 1_555 C A 24 1_555 C G 42 1_555 C C 23 1_555 -2.082 -1.648 3.321 7.404 0.254 48.031 -2.022 3.083 2.980 0.309 -9.033 48.565 39 CC_U40G42:C23A24_CC C 40 ? C 24 ? C 42 ? C 23 ? 1 C G 42 1_555 C C 23 1_555 C C 43 1_555 C G 22 1_555 -0.731 -1.951 3.238 -1.319 1.218 36.691 -3.260 0.983 3.198 1.933 2.093 36.734 40 CC_G42C43:G22C23_CC C 42 ? C 23 ? C 43 ? C 22 ? 1 C C 43 1_555 C G 22 1_555 C U 44 1_555 C U 10 1_555 0.803 0.253 3.152 -0.350 2.247 -25.127 -1.211 1.741 3.129 -5.152 -0.801 -25.228 41 CC_C43U44:U10G22_CC C 43 ? C 22 ? C 44 ? C 10 ? 1 C U 44 1_555 C U 10 1_555 C A 45 1_555 C U 21 1_555 -0.981 -4.468 3.717 19.341 1.995 53.177 -4.850 2.210 3.063 2.149 -20.836 56.377 42 CC_U44A45:U21U10_CC C 44 ? C 10 ? C 45 ? C 21 ? 1 C A 45 1_555 C U 21 1_555 C A 46 1_555 C U 20 1_555 0.490 -2.123 3.381 -0.377 5.768 29.985 -5.147 -1.004 2.924 11.020 0.721 30.525 43 CC_A45A46:U20U21_CC C 45 ? C 21 ? C 46 ? C 20 ? 1 C A 46 1_555 C U 20 1_555 C A 47 1_555 C A 19 1_555 -0.202 -0.655 3.004 6.507 8.592 55.285 -1.134 0.548 2.843 9.162 -6.939 56.245 44 CC_A46A47:A19U20_CC C 46 ? C 20 ? C 47 ? C 19 ? 1 C A 47 1_555 C A 19 1_555 C A 13 1_555 C U 18 1_555 0.016 0.464 3.315 -0.983 5.062 -33.733 -1.597 -0.129 3.213 -8.660 -1.681 -34.113 45 CC_A47A13:U18A19_CC C 47 ? C 19 ? C 13 ? C 18 ? 1 C A 13 1_555 C U 18 1_555 C A 49 1_555 C G 17 1_555 1.032 -1.805 3.254 0.706 -3.502 46.471 -1.983 -1.244 3.389 -4.431 -0.894 46.600 46 CC_A13A49:G17U18_CC C 13 ? C 18 ? C 49 ? C 17 ? 1 C A 49 1_555 C G 17 1_555 C G 50 1_555 C C 16 1_555 -0.104 -0.655 3.488 -6.800 3.475 61.425 -0.809 -0.234 3.443 3.388 6.630 61.852 47 CC_A49G50:C16G17_CC C 49 ? C 17 ? C 50 ? C 16 ? 1 C G 50 1_555 C C 16 1_555 C G 51 1_555 C C 15 1_555 -0.008 -2.205 3.203 3.017 5.824 36.765 -4.159 0.383 2.824 9.144 -4.738 37.325 48 CC_G50G51:C15C16_CC C 50 ? C 16 ? C 51 ? C 15 ? # _atom_sites.entry_id 2QWY _atom_sites.fract_transf_matrix[1][1] 0.008676 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002862 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020792 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009606 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CS MG N O P S # loop_