HEADER TRANSPORT PROTEIN 10-AUG-07 2QX5 TITLE STRUCTURE OF NUCLEOPORIN NIC96 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPORIN NIC96; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 186-839; COMPND 5 SYNONYM: NUCLEAR PORE PROTEIN NIC96, 96 KDA NUCLEOPORIN- INTERACTING COMPND 6 COMPONENT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: NIC96; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NUCLEOPORIN, MRNA TRANSPORT, NUCLEAR PORE COMPLEX, NUCLEUS, PROTEIN KEYWDS 2 TRANSPORT, TRANSLOCATION, TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.JEUDY,T.U.SCHWARTZ REVDAT 4 21-FEB-24 2QX5 1 REMARK SEQADV REVDAT 3 24-FEB-09 2QX5 1 VERSN REVDAT 2 04-DEC-07 2QX5 1 JRNL REVDAT 1 25-SEP-07 2QX5 0 JRNL AUTH S.JEUDY,T.U.SCHWARTZ JRNL TITL CRYSTAL STRUCTURE OF NUCLEOPORIN NIC96 REVEALS A NOVEL, JRNL TITL 2 INTRICATE HELICAL DOMAIN ARCHITECTURE JRNL REF J.BIOL.CHEM. V. 282 34904 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17897938 JRNL DOI 10.1074/JBC.M705479200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 54858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.5400 - 2.5000 0.99 0 138 0.2860 0.3180 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0718 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38100 REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 0.1M BIS TRIS PROPANE, REMARK 280 0.2M POTASSIUM THIOCYANATE, 1MM CETYLTRIMETHYLAMMONIUM BROMIDE, REMARK 280 PH 8.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.23900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 179 REMARK 465 GLY A 180 REMARK 465 SER A 181 REMARK 465 GLU A 182 REMARK 465 PHE A 183 REMARK 465 GLU A 184 REMARK 465 LEU A 185 REMARK 465 GLY A 186 REMARK 465 ASN A 187 REMARK 465 LYS A 188 REMARK 465 GLY A 189 REMARK 465 ASN A 190 REMARK 465 ASN A 191 REMARK 465 ILE A 192 REMARK 465 LEU A 193 REMARK 465 ASN A 194 REMARK 465 SER A 195 REMARK 465 ASN A 196 REMARK 465 GLU A 197 REMARK 465 SER A 198 REMARK 465 ARG A 199 REMARK 465 LYS A 361 REMARK 465 LYS A 362 REMARK 465 VAL A 363 REMARK 465 GLU A 364 REMARK 465 GLN A 365 REMARK 465 ALA A 375 REMARK 465 SER A 376 REMARK 465 SER A 377 REMARK 465 LYS A 378 REMARK 465 ASP A 379 REMARK 465 HIS A 380 REMARK 465 GLY A 381 REMARK 465 LEU A 382 REMARK 465 PRO A 383 REMARK 465 VAL A 384 REMARK 465 GLU A 385 REMARK 465 TYR A 386 REMARK 465 SER A 387 REMARK 465 THR A 388 REMARK 465 LYS A 389 REMARK 465 LEU A 390 REMARK 465 HIS A 391 REMARK 465 THR A 392 REMARK 465 GLU A 393 REMARK 465 TYR A 394 REMARK 465 ASN A 395 REMARK 465 GLN A 396 REMARK 465 HIS A 397 REMARK 465 ILE A 398 REMARK 465 LYS A 399 REMARK 465 SER A 400 REMARK 465 SER A 401 REMARK 465 LEU A 402 REMARK 465 ASP A 403 REMARK 465 GLY A 404 REMARK 465 GLU A 445 REMARK 465 LYS A 446 REMARK 465 ASP A 447 REMARK 465 ALA A 448 REMARK 465 GLU A 449 REMARK 465 ASN A 450 REMARK 465 ASP A 451 REMARK 465 PRO A 452 REMARK 465 VAL A 453 REMARK 465 TYR A 454 REMARK 465 PHE A 516 REMARK 465 LYS A 517 REMARK 465 ILE A 518 REMARK 465 ASP A 519 REMARK 465 SER A 520 REMARK 465 SER A 521 REMARK 465 THR A 522 REMARK 465 ARG A 523 REMARK 465 LEU A 524 REMARK 465 THR A 525 REMARK 465 LYS A 526 REMARK 465 LYS A 527 REMARK 465 PRO A 528 REMARK 465 LYS A 529 REMARK 465 ARG A 530 REMARK 465 ASP A 531 REMARK 465 ILE A 532 REMARK 465 SER A 748 REMARK 465 ASP A 749 REMARK 465 GLU A 750 REMARK 465 LEU A 751 REMARK 465 SER A 752 REMARK 465 ASP A 836 REMARK 465 VAL A 837 REMARK 465 SER A 838 REMARK 465 LEU A 839 REMARK 465 PRO B 179 REMARK 465 GLY B 180 REMARK 465 SER B 181 REMARK 465 GLU B 182 REMARK 465 PHE B 183 REMARK 465 GLU B 184 REMARK 465 LEU B 185 REMARK 465 GLY B 186 REMARK 465 ASN B 187 REMARK 465 LYS B 188 REMARK 465 GLY B 189 REMARK 465 ASN B 190 REMARK 465 ASN B 191 REMARK 465 ILE B 192 REMARK 465 LEU B 193 REMARK 465 ASN B 194 REMARK 465 SER B 195 REMARK 465 ASN B 196 REMARK 465 GLU B 197 REMARK 465 SER B 198 REMARK 465 ARG B 199 REMARK 465 LYS B 357 REMARK 465 ALA B 358 REMARK 465 ASN B 359 REMARK 465 ILE B 360 REMARK 465 LYS B 361 REMARK 465 LYS B 362 REMARK 465 VAL B 363 REMARK 465 ALA B 375 REMARK 465 SER B 376 REMARK 465 SER B 377 REMARK 465 LYS B 378 REMARK 465 ASP B 379 REMARK 465 HIS B 380 REMARK 465 GLY B 381 REMARK 465 LEU B 382 REMARK 465 PRO B 383 REMARK 465 VAL B 384 REMARK 465 GLU B 385 REMARK 465 TYR B 386 REMARK 465 SER B 387 REMARK 465 THR B 388 REMARK 465 LYS B 389 REMARK 465 LEU B 390 REMARK 465 HIS B 391 REMARK 465 THR B 392 REMARK 465 GLU B 393 REMARK 465 TYR B 394 REMARK 465 ASN B 395 REMARK 465 GLN B 396 REMARK 465 HIS B 397 REMARK 465 ILE B 398 REMARK 465 LYS B 399 REMARK 465 SER B 400 REMARK 465 SER B 401 REMARK 465 LEU B 402 REMARK 465 ASP B 403 REMARK 465 GLY B 404 REMARK 465 LYS B 444 REMARK 465 GLU B 445 REMARK 465 LYS B 446 REMARK 465 ASP B 447 REMARK 465 ALA B 448 REMARK 465 GLU B 449 REMARK 465 ASN B 450 REMARK 465 ASP B 451 REMARK 465 PRO B 452 REMARK 465 VAL B 453 REMARK 465 TYR B 454 REMARK 465 PHE B 516 REMARK 465 LYS B 517 REMARK 465 ILE B 518 REMARK 465 ASP B 519 REMARK 465 SER B 520 REMARK 465 SER B 521 REMARK 465 THR B 522 REMARK 465 ARG B 523 REMARK 465 LEU B 524 REMARK 465 THR B 525 REMARK 465 LYS B 526 REMARK 465 LYS B 527 REMARK 465 PRO B 528 REMARK 465 LYS B 529 REMARK 465 ARG B 530 REMARK 465 ASP B 531 REMARK 465 ILE B 532 REMARK 465 ASP B 749 REMARK 465 GLU B 750 REMARK 465 LEU B 751 REMARK 465 SER B 752 REMARK 465 SER B 838 REMARK 465 LEU B 839 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 267 CG OD1 OD2 REMARK 470 GLU A 272 CD OE1 OE2 REMARK 470 GLN A 281 CD OE1 NE2 REMARK 470 LYS A 291 CD CE NZ REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 ASN A 295 CG OD1 ND2 REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 LYS A 357 CD CE NZ REMARK 470 ARG A 422 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 455 CG CD OE1 OE2 REMARK 470 ARG A 456 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 570 CG CD OE1 OE2 REMARK 470 GLU A 616 CG CD OE1 OE2 REMARK 470 GLU A 618 CG CD OE1 OE2 REMARK 470 GLU A 625 CD OE1 OE2 REMARK 470 ARG A 629 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 630 NE CZ NH1 NH2 REMARK 470 GLU A 633 CG CD OE1 OE2 REMARK 470 ASP A 671 CG OD1 OD2 REMARK 470 ASP A 678 CG OD1 OD2 REMARK 470 ARG A 704 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 755 CG CD CE NZ REMARK 470 ARG A 811 NE CZ NH1 NH2 REMARK 470 GLU B 210 CD OE1 OE2 REMARK 470 LYS B 264 CG CD CE NZ REMARK 470 ASP B 267 CG OD1 OD2 REMARK 470 GLU B 272 CD OE1 OE2 REMARK 470 LYS B 291 CG CD CE NZ REMARK 470 LYS B 292 CG CD CE NZ REMARK 470 GLU B 296 CG CD OE1 OE2 REMARK 470 LYS B 315 CG CD CE NZ REMARK 470 LYS B 318 CG CD CE NZ REMARK 470 GLN B 365 CG CD OE1 NE2 REMARK 470 LEU B 420 CG CD1 CD2 REMARK 470 GLU B 455 CG CD OE1 OE2 REMARK 470 ARG B 456 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 581 CG CD1 CD2 REMARK 470 GLN B 608 CG CD OE1 NE2 REMARK 470 ARG B 614 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 616 CG CD OE1 OE2 REMARK 470 LYS B 617 CG CD CE NZ REMARK 470 GLU B 618 CG CD OE1 OE2 REMARK 470 ARG B 630 NE CZ NH1 NH2 REMARK 470 GLU B 633 CG CD OE1 OE2 REMARK 470 ASP B 678 CG OD1 OD2 REMARK 470 LYS B 755 CG CD CE NZ REMARK 470 ARG B 811 CD NE CZ NH1 NH2 REMARK 470 GLU B 827 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 265 17.35 54.58 REMARK 500 ASN A 269 92.31 -161.81 REMARK 500 ASN A 295 58.30 38.51 REMARK 500 GLU A 296 -99.53 -121.28 REMARK 500 ALA A 316 -45.49 82.68 REMARK 500 ASP A 317 2.51 -53.58 REMARK 500 ASN A 324 18.57 83.52 REMARK 500 ASN A 329 21.32 46.41 REMARK 500 LYS A 357 -36.07 -39.45 REMARK 500 ASN A 359 8.90 -62.36 REMARK 500 ARG A 422 71.68 -107.55 REMARK 500 SER A 475 -108.71 40.16 REMARK 500 SER A 499 96.07 -179.49 REMARK 500 LYS A 514 55.26 71.25 REMARK 500 ASN B 229 -6.21 75.08 REMARK 500 ILE B 268 82.86 -62.65 REMARK 500 ASN B 293 -77.75 -116.54 REMARK 500 LYS B 315 83.58 -69.72 REMARK 500 ALA B 316 -47.13 71.95 REMARK 500 ASN B 329 18.27 53.02 REMARK 500 PRO B 406 -29.06 -39.30 REMARK 500 ASP B 419 66.27 -101.54 REMARK 500 ARG B 422 68.26 -115.85 REMARK 500 SER B 475 -123.47 43.33 REMARK 500 ASN B 476 30.57 -97.85 REMARK 500 SER B 499 103.41 -167.72 REMARK 500 LYS B 514 59.17 74.39 REMARK 500 PRO B 566 -9.20 -58.64 REMARK 500 ARG B 607 33.48 -97.48 REMARK 500 ARG B 614 -70.82 -83.08 REMARK 500 GLU B 616 32.98 -79.31 REMARK 500 LYS B 617 5.10 -158.54 REMARK 500 ILE B 835 88.33 -178.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 315 ALA B 316 127.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 854 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 844 DBREF 2QX5 A 186 839 UNP P34077 NIC96_YEAST 186 839 DBREF 2QX5 B 186 839 UNP P34077 NIC96_YEAST 186 839 SEQADV 2QX5 PRO A 179 UNP P34077 EXPRESSION TAG SEQADV 2QX5 GLY A 180 UNP P34077 EXPRESSION TAG SEQADV 2QX5 SER A 181 UNP P34077 EXPRESSION TAG SEQADV 2QX5 GLU A 182 UNP P34077 EXPRESSION TAG SEQADV 2QX5 PHE A 183 UNP P34077 EXPRESSION TAG SEQADV 2QX5 GLU A 184 UNP P34077 EXPRESSION TAG SEQADV 2QX5 LEU A 185 UNP P34077 EXPRESSION TAG SEQADV 2QX5 PRO B 179 UNP P34077 EXPRESSION TAG SEQADV 2QX5 GLY B 180 UNP P34077 EXPRESSION TAG SEQADV 2QX5 SER B 181 UNP P34077 EXPRESSION TAG SEQADV 2QX5 GLU B 182 UNP P34077 EXPRESSION TAG SEQADV 2QX5 PHE B 183 UNP P34077 EXPRESSION TAG SEQADV 2QX5 GLU B 184 UNP P34077 EXPRESSION TAG SEQADV 2QX5 LEU B 185 UNP P34077 EXPRESSION TAG SEQRES 1 A 661 PRO GLY SER GLU PHE GLU LEU GLY ASN LYS GLY ASN ASN SEQRES 2 A 661 ILE LEU ASN SER ASN GLU SER ARG LEU ASN VAL ASN GLU SEQRES 3 A 661 ASN ASN ILE LEU ARG GLU LYS PHE GLU ASN TYR ALA ARG SEQRES 4 A 661 ILE VAL PHE GLN PHE ASN ASN SER ARG GLN ALA ASN GLY SEQRES 5 A 661 ASN PHE ASP ILE ALA ASN GLU PHE ILE SER ILE LEU SER SEQRES 6 A 661 SER ALA ASN GLY THR ARG ASN ALA GLN LEU LEU GLU SER SEQRES 7 A 661 TRP LYS ILE LEU GLU SER MET LYS SER LYS ASP ILE ASN SEQRES 8 A 661 ILE VAL GLU VAL GLY LYS GLN TYR LEU GLU GLN GLN PHE SEQRES 9 A 661 LEU GLN TYR THR ASP ASN LEU TYR LYS LYS ASN MET ASN SEQRES 10 A 661 GLU GLY LEU ALA THR ASN VAL ASN LYS ILE LYS SER PHE SEQRES 11 A 661 ILE ASP THR LYS LEU LYS LYS ALA ASP LYS SER TRP LYS SEQRES 12 A 661 ILE SER ASN LEU THR VAL ILE ASN GLY VAL PRO ILE TRP SEQRES 13 A 661 ALA LEU ILE PHE TYR LEU LEU ARG ALA GLY LEU ILE LYS SEQRES 14 A 661 GLU ALA LEU GLN VAL LEU VAL GLU ASN LYS ALA ASN ILE SEQRES 15 A 661 LYS LYS VAL GLU GLN SER PHE LEU THR TYR PHE LYS ALA SEQRES 16 A 661 TYR ALA SER SER LYS ASP HIS GLY LEU PRO VAL GLU TYR SEQRES 17 A 661 SER THR LYS LEU HIS THR GLU TYR ASN GLN HIS ILE LYS SEQRES 18 A 661 SER SER LEU ASP GLY ASP PRO TYR ARG LEU ALA VAL TYR SEQRES 19 A 661 LYS LEU ILE GLY ARG CYS ASP LEU SER ARG LYS ASN ILE SEQRES 20 A 661 PRO ALA VAL THR LEU SER ILE GLU ASP TRP LEU TRP MET SEQRES 21 A 661 HIS LEU MET LEU ILE LYS GLU LYS ASP ALA GLU ASN ASP SEQRES 22 A 661 PRO VAL TYR GLU ARG TYR SER LEU GLU ASP PHE GLN ASN SEQRES 23 A 661 ILE ILE ILE SER TYR GLY PRO SER ARG PHE SER ASN TYR SEQRES 24 A 661 TYR LEU GLN THR LEU LEU LEU SER GLY LEU TYR GLY LEU SEQRES 25 A 661 ALA ILE ASP TYR THR TYR THR PHE SER GLU MET ASP ALA SEQRES 26 A 661 VAL HIS LEU ALA ILE GLY LEU ALA SER LEU LYS LEU PHE SEQRES 27 A 661 LYS ILE ASP SER SER THR ARG LEU THR LYS LYS PRO LYS SEQRES 28 A 661 ARG ASP ILE ARG PHE ALA ASN ILE LEU ALA ASN TYR THR SEQRES 29 A 661 LYS SER PHE ARG TYR SER ASP PRO ARG VAL ALA VAL GLU SEQRES 30 A 661 TYR LEU VAL LEU ILE THR LEU ASN GLU GLY PRO THR ASP SEQRES 31 A 661 VAL GLU LEU CYS HIS GLU ALA LEU ARG GLU LEU VAL LEU SEQRES 32 A 661 GLU THR LYS GLU PHE THR VAL LEU LEU GLY LYS ILE GLY SEQRES 33 A 661 ARG ASP GLY ALA ARG ILE PRO GLY VAL ILE GLU GLU ARG SEQRES 34 A 661 GLN PRO LEU LEU HIS VAL ARG ASP GLU LYS GLU PHE LEU SEQRES 35 A 661 HIS THR ILE THR GLU GLN ALA ALA ARG ARG ALA ASP GLU SEQRES 36 A 661 ASP GLY ARG ILE TYR ASP SER ILE LEU LEU TYR GLN LEU SEQRES 37 A 661 ALA GLU GLU TYR ASP ILE VAL ILE THR LEU VAL ASN SER SEQRES 38 A 661 LEU LEU SER ASP THR LEU SER ALA SER ASP LEU ASP GLN SEQRES 39 A 661 PRO LEU VAL GLY PRO ASP ASP ASN SER GLU THR ASN PRO SEQRES 40 A 661 VAL LEU LEU ALA ARG ARG MET ALA SER ILE TYR PHE ASP SEQRES 41 A 661 ASN ALA GLY ILE SER ARG GLN ILE HIS VAL LYS ASN LYS SEQRES 42 A 661 GLU ILE CYS MET LEU LEU LEU ASN ILE SER SER ILE ARG SEQRES 43 A 661 GLU LEU TYR PHE ASN LYS GLN TRP GLN GLU THR LEU SER SEQRES 44 A 661 GLN MET GLU LEU LEU ASP LEU LEU PRO PHE SER ASP GLU SEQRES 45 A 661 LEU SER ALA ARG LYS LYS ALA GLN ASP PHE SER ASN LEU SEQRES 46 A 661 ASP ASP ASN ILE VAL LYS ASN ILE PRO ASN LEU LEU ILE SEQRES 47 A 661 ILE THR LEU SER CYS ILE SER ASN MET ILE HIS ILE LEU SEQRES 48 A 661 ASN GLU SER LYS TYR GLN SER SER THR LYS GLY GLN GLN SEQRES 49 A 661 ILE ASP SER LEU LYS ASN VAL ALA ARG GLN CYS MET ILE SEQRES 50 A 661 TYR ALA GLY MET ILE GLN TYR ARG MET PRO ARG GLU THR SEQRES 51 A 661 TYR SER THR LEU ILE ASN ILE ASP VAL SER LEU SEQRES 1 B 661 PRO GLY SER GLU PHE GLU LEU GLY ASN LYS GLY ASN ASN SEQRES 2 B 661 ILE LEU ASN SER ASN GLU SER ARG LEU ASN VAL ASN GLU SEQRES 3 B 661 ASN ASN ILE LEU ARG GLU LYS PHE GLU ASN TYR ALA ARG SEQRES 4 B 661 ILE VAL PHE GLN PHE ASN ASN SER ARG GLN ALA ASN GLY SEQRES 5 B 661 ASN PHE ASP ILE ALA ASN GLU PHE ILE SER ILE LEU SER SEQRES 6 B 661 SER ALA ASN GLY THR ARG ASN ALA GLN LEU LEU GLU SER SEQRES 7 B 661 TRP LYS ILE LEU GLU SER MET LYS SER LYS ASP ILE ASN SEQRES 8 B 661 ILE VAL GLU VAL GLY LYS GLN TYR LEU GLU GLN GLN PHE SEQRES 9 B 661 LEU GLN TYR THR ASP ASN LEU TYR LYS LYS ASN MET ASN SEQRES 10 B 661 GLU GLY LEU ALA THR ASN VAL ASN LYS ILE LYS SER PHE SEQRES 11 B 661 ILE ASP THR LYS LEU LYS LYS ALA ASP LYS SER TRP LYS SEQRES 12 B 661 ILE SER ASN LEU THR VAL ILE ASN GLY VAL PRO ILE TRP SEQRES 13 B 661 ALA LEU ILE PHE TYR LEU LEU ARG ALA GLY LEU ILE LYS SEQRES 14 B 661 GLU ALA LEU GLN VAL LEU VAL GLU ASN LYS ALA ASN ILE SEQRES 15 B 661 LYS LYS VAL GLU GLN SER PHE LEU THR TYR PHE LYS ALA SEQRES 16 B 661 TYR ALA SER SER LYS ASP HIS GLY LEU PRO VAL GLU TYR SEQRES 17 B 661 SER THR LYS LEU HIS THR GLU TYR ASN GLN HIS ILE LYS SEQRES 18 B 661 SER SER LEU ASP GLY ASP PRO TYR ARG LEU ALA VAL TYR SEQRES 19 B 661 LYS LEU ILE GLY ARG CYS ASP LEU SER ARG LYS ASN ILE SEQRES 20 B 661 PRO ALA VAL THR LEU SER ILE GLU ASP TRP LEU TRP MET SEQRES 21 B 661 HIS LEU MET LEU ILE LYS GLU LYS ASP ALA GLU ASN ASP SEQRES 22 B 661 PRO VAL TYR GLU ARG TYR SER LEU GLU ASP PHE GLN ASN SEQRES 23 B 661 ILE ILE ILE SER TYR GLY PRO SER ARG PHE SER ASN TYR SEQRES 24 B 661 TYR LEU GLN THR LEU LEU LEU SER GLY LEU TYR GLY LEU SEQRES 25 B 661 ALA ILE ASP TYR THR TYR THR PHE SER GLU MET ASP ALA SEQRES 26 B 661 VAL HIS LEU ALA ILE GLY LEU ALA SER LEU LYS LEU PHE SEQRES 27 B 661 LYS ILE ASP SER SER THR ARG LEU THR LYS LYS PRO LYS SEQRES 28 B 661 ARG ASP ILE ARG PHE ALA ASN ILE LEU ALA ASN TYR THR SEQRES 29 B 661 LYS SER PHE ARG TYR SER ASP PRO ARG VAL ALA VAL GLU SEQRES 30 B 661 TYR LEU VAL LEU ILE THR LEU ASN GLU GLY PRO THR ASP SEQRES 31 B 661 VAL GLU LEU CYS HIS GLU ALA LEU ARG GLU LEU VAL LEU SEQRES 32 B 661 GLU THR LYS GLU PHE THR VAL LEU LEU GLY LYS ILE GLY SEQRES 33 B 661 ARG ASP GLY ALA ARG ILE PRO GLY VAL ILE GLU GLU ARG SEQRES 34 B 661 GLN PRO LEU LEU HIS VAL ARG ASP GLU LYS GLU PHE LEU SEQRES 35 B 661 HIS THR ILE THR GLU GLN ALA ALA ARG ARG ALA ASP GLU SEQRES 36 B 661 ASP GLY ARG ILE TYR ASP SER ILE LEU LEU TYR GLN LEU SEQRES 37 B 661 ALA GLU GLU TYR ASP ILE VAL ILE THR LEU VAL ASN SER SEQRES 38 B 661 LEU LEU SER ASP THR LEU SER ALA SER ASP LEU ASP GLN SEQRES 39 B 661 PRO LEU VAL GLY PRO ASP ASP ASN SER GLU THR ASN PRO SEQRES 40 B 661 VAL LEU LEU ALA ARG ARG MET ALA SER ILE TYR PHE ASP SEQRES 41 B 661 ASN ALA GLY ILE SER ARG GLN ILE HIS VAL LYS ASN LYS SEQRES 42 B 661 GLU ILE CYS MET LEU LEU LEU ASN ILE SER SER ILE ARG SEQRES 43 B 661 GLU LEU TYR PHE ASN LYS GLN TRP GLN GLU THR LEU SER SEQRES 44 B 661 GLN MET GLU LEU LEU ASP LEU LEU PRO PHE SER ASP GLU SEQRES 45 B 661 LEU SER ALA ARG LYS LYS ALA GLN ASP PHE SER ASN LEU SEQRES 46 B 661 ASP ASP ASN ILE VAL LYS ASN ILE PRO ASN LEU LEU ILE SEQRES 47 B 661 ILE THR LEU SER CYS ILE SER ASN MET ILE HIS ILE LEU SEQRES 48 B 661 ASN GLU SER LYS TYR GLN SER SER THR LYS GLY GLN GLN SEQRES 49 B 661 ILE ASP SER LEU LYS ASN VAL ALA ARG GLN CYS MET ILE SEQRES 50 B 661 TYR ALA GLY MET ILE GLN TYR ARG MET PRO ARG GLU THR SEQRES 51 B 661 TYR SER THR LEU ILE ASN ILE ASP VAL SER LEU HET CL A 854 1 HET CL B 844 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *123(H2 O) HELIX 1 1 ASN A 205 ALA A 228 1 24 HELIX 2 2 ASP A 233 SER A 244 1 12 HELIX 3 3 GLY A 247 SER A 262 1 16 HELIX 4 4 ASN A 269 MET A 294 1 26 HELIX 5 5 THR A 300 LYS A 312 1 13 HELIX 6 6 ILE A 333 ARG A 342 1 10 HELIX 7 7 LEU A 345 ASN A 356 1 12 HELIX 8 8 LYS A 357 ILE A 360 5 4 HELIX 9 9 SER A 366 TYR A 374 1 9 HELIX 10 10 ASP A 405 ARG A 417 1 13 HELIX 11 11 ASP A 419 LYS A 423 5 5 HELIX 12 12 ILE A 425 THR A 429 5 5 HELIX 13 13 SER A 431 LEU A 442 1 12 HELIX 14 14 SER A 458 GLY A 470 1 13 HELIX 15 15 PRO A 471 SER A 475 5 5 HELIX 16 16 TYR A 477 SER A 485 1 9 HELIX 17 17 LEU A 487 THR A 497 1 11 HELIX 18 18 SER A 499 LEU A 513 1 15 HELIX 19 19 ARG A 533 LYS A 543 1 11 HELIX 20 20 ASP A 549 LEU A 559 1 11 HELIX 21 21 ILE A 560 ASN A 563 5 4 HELIX 22 22 GLY A 565 LYS A 584 1 20 HELIX 23 23 GLU A 585 GLY A 591 1 7 HELIX 24 24 GLY A 602 ARG A 607 1 6 HELIX 25 25 GLN A 608 HIS A 612 5 5 HELIX 26 26 ASP A 615 ASP A 634 1 20 HELIX 27 27 ARG A 636 ALA A 647 1 12 HELIX 28 28 GLU A 649 SER A 668 1 20 HELIX 29 29 ASN A 684 PHE A 697 1 14 HELIX 30 30 ASN A 699 ARG A 704 1 6 HELIX 31 31 HIS A 707 ASN A 729 1 23 HELIX 32 32 GLN A 731 LEU A 742 1 12 HELIX 33 33 ALA A 753 PHE A 760 1 8 HELIX 34 34 SER A 761 LEU A 763 5 3 HELIX 35 35 ASP A 764 LYS A 769 1 6 HELIX 36 36 ASN A 770 GLU A 791 1 22 HELIX 37 37 THR A 798 ILE A 820 1 23 HELIX 38 38 GLN A 821 MET A 824 5 4 HELIX 39 39 PRO A 825 ASN A 834 1 10 HELIX 40 40 ASN B 205 ASN B 229 1 25 HELIX 41 41 ASP B 233 SER B 244 1 12 HELIX 42 42 GLY B 247 SER B 262 1 16 HELIX 43 43 ASN B 269 LYS B 291 1 23 HELIX 44 44 THR B 300 LYS B 312 1 13 HELIX 45 45 PRO B 332 ARG B 342 1 11 HELIX 46 46 LEU B 345 GLU B 355 1 11 HELIX 47 47 SER B 366 TYR B 374 1 9 HELIX 48 48 ASP B 405 ARG B 417 1 13 HELIX 49 49 ASP B 419 LYS B 423 5 5 HELIX 50 50 SER B 431 ILE B 443 1 13 HELIX 51 51 SER B 458 GLY B 470 1 13 HELIX 52 52 PRO B 471 PHE B 474 5 4 HELIX 53 53 TYR B 477 SER B 485 1 9 HELIX 54 54 LEU B 487 THR B 497 1 11 HELIX 55 55 SER B 499 SER B 512 1 14 HELIX 56 56 ARG B 533 THR B 542 1 10 HELIX 57 57 LYS B 543 ARG B 546 5 4 HELIX 58 58 ASP B 549 ILE B 560 1 12 HELIX 59 59 THR B 561 ASN B 563 5 3 HELIX 60 60 THR B 567 LYS B 584 1 18 HELIX 61 61 GLU B 585 GLY B 591 1 7 HELIX 62 62 GLY B 602 ARG B 607 1 6 HELIX 63 63 GLN B 608 HIS B 612 5 5 HELIX 64 64 GLU B 618 GLY B 635 1 18 HELIX 65 65 ARG B 636 ALA B 647 1 12 HELIX 66 66 GLU B 649 SER B 668 1 20 HELIX 67 67 ASN B 684 PHE B 697 1 14 HELIX 68 68 ASN B 699 ARG B 704 1 6 HELIX 69 69 HIS B 707 ASN B 729 1 23 HELIX 70 70 GLN B 731 LEU B 742 1 12 HELIX 71 71 ALA B 753 PHE B 760 1 8 HELIX 72 72 SER B 761 LEU B 763 5 3 HELIX 73 73 ASP B 764 LYS B 769 1 6 HELIX 74 74 ASN B 770 GLU B 791 1 22 HELIX 75 75 THR B 798 ILE B 820 1 23 HELIX 76 76 GLN B 821 MET B 824 5 4 HELIX 77 77 PRO B 825 LEU B 832 1 8 SHEET 1 A 2 VAL A 327 ILE A 328 0 SHEET 2 A 2 VAL A 331 PRO A 332 -1 O VAL A 331 N ILE A 328 SHEET 1 B 2 LYS A 592 ILE A 593 0 SHEET 2 B 2 ARG A 599 ILE A 600 -1 O ILE A 600 N LYS A 592 SHEET 1 C 2 LYS B 314 LYS B 315 0 SHEET 2 C 2 SER B 319 TRP B 320 -1 O SER B 319 N LYS B 315 SHEET 1 D 2 LYS B 592 ILE B 593 0 SHEET 2 D 2 ARG B 599 ILE B 600 -1 O ILE B 600 N LYS B 592 SITE 1 AC1 1 ASN A 773 SITE 1 AC2 2 ILE B 720 ASN B 773 CRYST1 87.121 82.478 113.028 90.00 91.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011478 0.000000 0.000222 0.00000 SCALE2 0.000000 0.012124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008849 0.00000