HEADER APOPTOSIS 10-AUG-07 2QXA OBSLTE 31-JUL-13 2QXA 4KVP TITLE HUMAN P53 CORE DOMAIN MUTANT V157F COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: P53 CORE DOMAIN; COMPND 5 SYNONYM: TUMOR SUPPRESSOR P53, PHOSPHOPROTEIN P53, ANTIGEN NY-CO-13; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53, P53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSE420; SOURCE 11 OTHER_DETAILS: PCR MUTAGENESIS KEYWDS P53; APOPTOSIS; CANCER MUTATION; CRYSTAL STRUCTURE, ACTIVATOR, ANTI- KEYWDS 2 ONCOGENE, CELL CYCLE, DISEASE MUTATION, DNA-BINDING, ENDOPLASMIC KEYWDS 3 RETICULUM, GLYCOPROTEIN, HOST-VIRUS INTERACTION, LI-FRAUMENI KEYWDS 4 SYNDROME, METAL-BINDING, NUCLEUS, PHOSPHORYLATION, TRANSCRIPTION, KEYWDS 5 TRANSCRIPTION REGULATION, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR H.LUECKE,Y.WANG REVDAT 4 31-JUL-13 2QXA 1 OBSLTE REVDAT 3 15-MAY-13 2QXA 1 REMARK SEQADV SOURCE VERSN REVDAT 2 24-FEB-09 2QXA 1 VERSN REVDAT 1 26-AUG-08 2QXA 0 JRNL AUTH H.LUECKE,Y.WANG JRNL TITL CRYSTAL STRUCTURES OF ONCOGENIC, SUPPRESSOR AND RESCUED P53 JRNL TITL 2 CORE DOMAIN MUTANTS AND THE RESCUE MECHANISM OF GLOBAL JRNL TITL 3 SUPPRESSOR MUTATIONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 122696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8881 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6118 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 537 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.40600 REMARK 3 B22 (A**2) : 6.98800 REMARK 3 B33 (A**2) : -3.58300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.456 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.320 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.194 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.271 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 41.06 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB044160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SIDE-SCATTERING CUBEROOT I-BEAM REMARK 200 BENT SINGLE CRYSTAL; ASYMETRIC REMARK 200 CUT 12.2 DEGS. REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; SINGLE REMARK 200 CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 122789 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 42.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.330 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.01 REMARK 200 R MERGE FOR SHELL (I) : 0.31300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER PROTEIN SOLUTION (AROUND REMARK 280 5.0-7.0 MG/ML PROTEIN IN 20 MM TRIS PH 7.6, 150 MM NACL, 10 MM REMARK 280 DTT) WERE MIXED WITH 2 MICROLITER RESERVOIR BUFFER (25% (W/V) REMARK 280 POLYETHYLENE GLYCOL (PEG) 2000 MONOMETHYL ETHER (MME)), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.13950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 95 REMARK 465 SER B 95 REMARK 465 SER D 95 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 268 O HOH B 424 2.16 REMARK 500 NH1 ARG B 202 O HOH B 398 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 289 C LEU B 289 O 0.139 REMARK 500 LEU B 289 C LEU B 289 OXT 0.195 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 289 CB - CG - CD1 ANGL. DEV. = -12.1 DEGREES REMARK 500 VAL D 97 N - CA - C ANGL. DEV. = 24.5 DEGREES REMARK 500 SER D 96 CA - C - N ANGL. DEV. = -16.7 DEGREES REMARK 500 VAL D 97 C - N - CA ANGL. DEV. = 17.2 DEGREES REMARK 500 PRO D 98 C - N - CA ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 115 73.81 -103.82 REMARK 500 SER A 183 58.95 -97.19 REMARK 500 VAL B 225 108.15 -36.94 REMARK 500 ASN B 288 -80.81 -112.37 REMARK 500 SER C 185 141.67 -38.00 REMARK 500 VAL D 97 108.59 -43.44 REMARK 500 ALA D 138 -0.20 69.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER C 185 24.6 L L OUTSIDE RANGE REMARK 500 VAL D 97 20.1 L L OUTSIDE RANGE REMARK 500 PRO D 98 46.8 L L OUTSIDE RANGE REMARK 500 CYS D 182 23.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 103.2 REMARK 620 3 CYS A 238 SG 111.9 100.2 REMARK 620 4 CYS A 242 SG 119.9 98.9 118.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 109.0 REMARK 620 3 CYS B 238 SG 107.5 101.4 REMARK 620 4 CYS B 242 SG 115.0 98.5 123.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 3 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 176 SG REMARK 620 2 HIS C 179 ND1 105.9 REMARK 620 3 CYS C 238 SG 108.0 102.2 REMARK 620 4 CYS C 242 SG 108.8 109.1 121.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 4 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 176 SG REMARK 620 2 HIS D 179 ND1 101.2 REMARK 620 3 CYS D 238 SG 109.7 108.3 REMARK 620 4 CYS D 242 SG 109.9 102.5 122.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QXB RELATED DB: PDB REMARK 900 RELATED ID: 2QXC RELATED DB: PDB REMARK 900 RELATED ID: 2QVQ RELATED DB: PDB DBREF 2QXA A 95 289 UNP P04637 P53_HUMAN 95 289 DBREF 2QXA B 95 289 UNP P04637 P53_HUMAN 95 289 DBREF 2QXA C 95 289 UNP P04637 P53_HUMAN 95 289 DBREF 2QXA D 95 289 UNP P04637 P53_HUMAN 95 289 SEQADV 2QXA PHE A 157 UNP P04637 VAL 157 ENGINEERED MUTATION SEQADV 2QXA PHE B 157 UNP P04637 VAL 157 ENGINEERED MUTATION SEQADV 2QXA PHE C 157 UNP P04637 VAL 157 ENGINEERED MUTATION SEQADV 2QXA PHE D 157 UNP P04637 VAL 157 ENGINEERED MUTATION SEQRES 1 A 195 SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR SEQRES 2 A 195 GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SEQRES 3 A 195 SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS MET SEQRES 4 A 195 PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP SEQRES 5 A 195 VAL ASP SER THR PRO PRO PRO GLY THR ARG PHE ARG ALA SEQRES 6 A 195 MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL SEQRES 7 A 195 VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER SEQRES 8 A 195 ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU SEQRES 9 A 195 GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR SEQRES 10 A 195 PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU SEQRES 11 A 195 VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR MET SEQRES 12 A 195 CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG PRO SEQRES 13 A 195 ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY ASN SEQRES 14 A 195 LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS ALA SEQRES 15 A 195 CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 B 195 SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR SEQRES 2 B 195 GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SEQRES 3 B 195 SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS MET SEQRES 4 B 195 PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP SEQRES 5 B 195 VAL ASP SER THR PRO PRO PRO GLY THR ARG PHE ARG ALA SEQRES 6 B 195 MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL SEQRES 7 B 195 VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER SEQRES 8 B 195 ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU SEQRES 9 B 195 GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR SEQRES 10 B 195 PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU SEQRES 11 B 195 VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR MET SEQRES 12 B 195 CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG PRO SEQRES 13 B 195 ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY ASN SEQRES 14 B 195 LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS ALA SEQRES 15 B 195 CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 C 195 SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR SEQRES 2 C 195 GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SEQRES 3 C 195 SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS MET SEQRES 4 C 195 PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP SEQRES 5 C 195 VAL ASP SER THR PRO PRO PRO GLY THR ARG PHE ARG ALA SEQRES 6 C 195 MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL SEQRES 7 C 195 VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER SEQRES 8 C 195 ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU SEQRES 9 C 195 GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR SEQRES 10 C 195 PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU SEQRES 11 C 195 VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR MET SEQRES 12 C 195 CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG PRO SEQRES 13 C 195 ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY ASN SEQRES 14 C 195 LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS ALA SEQRES 15 C 195 CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN LEU SEQRES 1 D 195 SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER TYR SEQRES 2 D 195 GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA LYS SEQRES 3 D 195 SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS MET SEQRES 4 D 195 PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU TRP SEQRES 5 D 195 VAL ASP SER THR PRO PRO PRO GLY THR ARG PHE ARG ALA SEQRES 6 D 195 MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU VAL SEQRES 7 D 195 VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SER SEQRES 8 D 195 ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL GLU SEQRES 9 D 195 GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN THR SEQRES 10 D 195 PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO GLU SEQRES 11 D 195 VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR MET SEQRES 12 D 195 CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG PRO SEQRES 13 D 195 ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY ASN SEQRES 14 D 195 LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS ALA SEQRES 15 D 195 CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN LEU HET ZN A 1 1 HET ZN B 2 1 HET ZN C 3 1 HET ZN D 4 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *537(H2 O) HELIX 1 1 GLN A 104 GLY A 108 5 5 HELIX 2 2 GLN A 165 MET A 169 5 5 HELIX 3 3 CYS A 176 CYS A 182 1 7 HELIX 4 4 CYS A 277 ASN A 288 1 12 HELIX 5 5 CYS B 176 CYS B 182 1 7 HELIX 6 6 CYS B 277 GLU B 287 1 11 HELIX 7 7 GLN C 165 MET C 169 5 5 HELIX 8 8 CYS C 176 CYS C 182 1 7 HELIX 9 9 CYS C 277 ASN C 288 1 12 HELIX 10 10 GLN D 165 MET D 169 5 5 HELIX 11 11 CYS D 176 ARG D 181 1 6 HELIX 12 12 CYS D 277 ASN D 288 1 12 SHEET 1 A 4 ARG A 110 GLY A 112 0 SHEET 2 A 4 CYS A 141 TRP A 146 -1 O GLN A 144 N GLY A 112 SHEET 3 A 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 A 4 ILE A 195 GLU A 198 -1 N GLU A 198 O HIS A 233 SHEET 1 B 7 CYS A 124 SER A 127 0 SHEET 2 B 7 LYS A 132 CYS A 135 -1 O LYS A 132 N SER A 127 SHEET 3 B 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 B 7 ILE A 251 GLU A 258 -1 N LEU A 257 O LEU A 265 SHEET 5 B 7 ARG A 156 TYR A 163 -1 N MET A 160 O ILE A 254 SHEET 6 B 7 HIS A 214 PRO A 219 -1 O VAL A 216 N ALA A 159 SHEET 7 B 7 GLU A 204 ASP A 207 -1 N GLU A 204 O VAL A 217 SHEET 1 C 4 ARG B 110 GLY B 112 0 SHEET 2 C 4 CYS B 141 TRP B 146 -1 O TRP B 146 N ARG B 110 SHEET 3 C 4 THR B 230 TYR B 236 -1 O THR B 230 N LEU B 145 SHEET 4 C 4 ILE B 195 VAL B 197 -1 N ARG B 196 O ASN B 235 SHEET 1 D 7 CYS B 124 SER B 127 0 SHEET 2 D 7 LYS B 132 CYS B 135 -1 O LYS B 132 N SER B 127 SHEET 3 D 7 LEU B 264 VAL B 274 1 O GLU B 271 N MET B 133 SHEET 4 D 7 ILE B 251 GLU B 258 -1 N LEU B 257 O LEU B 265 SHEET 5 D 7 ARG B 156 TYR B 163 -1 N MET B 160 O ILE B 254 SHEET 6 D 7 HIS B 214 PRO B 219 -1 O VAL B 216 N ALA B 159 SHEET 7 D 7 GLU B 204 ASP B 207 -1 N GLU B 204 O VAL B 217 SHEET 1 E 4 ARG C 110 GLY C 112 0 SHEET 2 E 4 CYS C 141 TRP C 146 -1 O TRP C 146 N ARG C 110 SHEET 3 E 4 THR C 230 TYR C 236 -1 O THR C 230 N LEU C 145 SHEET 4 E 4 ILE C 195 VAL C 197 -1 N ARG C 196 O ASN C 235 SHEET 1 F 7 CYS C 124 SER C 127 0 SHEET 2 F 7 LYS C 132 CYS C 135 -1 O PHE C 134 N THR C 125 SHEET 3 F 7 LEU C 264 VAL C 274 1 O GLU C 271 N MET C 133 SHEET 4 F 7 ILE C 251 GLU C 258 -1 N LEU C 257 O LEU C 265 SHEET 5 F 7 ARG C 156 TYR C 163 -1 N MET C 160 O ILE C 254 SHEET 6 F 7 HIS C 214 PRO C 219 -1 O VAL C 218 N PHE C 157 SHEET 7 F 7 GLU C 204 ASP C 207 -1 N GLU C 204 O VAL C 217 SHEET 1 G 4 ARG D 110 GLY D 112 0 SHEET 2 G 4 CYS D 141 TRP D 146 -1 O GLN D 144 N GLY D 112 SHEET 3 G 4 THR D 230 TYR D 236 -1 O THR D 230 N LEU D 145 SHEET 4 G 4 ILE D 195 VAL D 197 -1 N ARG D 196 O ASN D 235 SHEET 1 H 7 CYS D 124 SER D 127 0 SHEET 2 H 7 LYS D 132 CYS D 135 -1 O PHE D 134 N THR D 125 SHEET 3 H 7 LEU D 264 VAL D 274 1 O GLU D 271 N MET D 133 SHEET 4 H 7 ILE D 251 GLU D 258 -1 N LEU D 257 O LEU D 265 SHEET 5 H 7 ARG D 156 TYR D 163 -1 N MET D 160 O ILE D 254 SHEET 6 H 7 HIS D 214 PRO D 219 -1 O VAL D 218 N PHE D 157 SHEET 7 H 7 GLU D 204 ASP D 207 -1 N GLU D 204 O VAL D 217 LINK SG CYS A 176 ZN ZN A 1 1555 1555 2.47 LINK ND1 HIS A 179 ZN ZN A 1 1555 1555 2.11 LINK SG CYS A 238 ZN ZN A 1 1555 1555 2.51 LINK SG CYS A 242 ZN ZN A 1 1555 1555 2.41 LINK SG CYS B 176 ZN ZN B 2 1555 1555 2.53 LINK ND1 HIS B 179 ZN ZN B 2 1555 1555 2.13 LINK SG CYS B 238 ZN ZN B 2 1555 1555 2.49 LINK SG CYS B 242 ZN ZN B 2 1555 1555 2.35 LINK SG CYS C 176 ZN ZN C 3 1555 1555 2.50 LINK ND1 HIS C 179 ZN ZN C 3 1555 1555 1.76 LINK SG CYS C 238 ZN ZN C 3 1555 1555 2.53 LINK SG CYS C 242 ZN ZN C 3 1555 1555 2.45 LINK SG CYS D 176 ZN ZN D 4 1555 1555 2.37 LINK ND1 HIS D 179 ZN ZN D 4 1555 1555 1.98 LINK SG CYS D 238 ZN ZN D 4 1555 1555 2.41 LINK SG CYS D 242 ZN ZN D 4 1555 1555 2.47 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 SITE 1 AC2 4 CYS B 176 HIS B 179 CYS B 238 CYS B 242 SITE 1 AC3 4 CYS C 176 HIS C 179 CYS C 238 CYS C 242 SITE 1 AC4 4 CYS D 176 HIS D 179 CYS D 238 CYS D 242 CRYST1 68.656 70.279 83.559 90.00 89.94 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014565 0.000000 -0.000015 0.00000 SCALE2 0.000000 0.014229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011968 0.00000