data_2QYB # _entry.id 2QYB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QYB RCSB RCSB044197 WWPDB D_1000044197 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC87689.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2QYB _pdbx_database_status.recvd_initial_deposition_date 2007-08-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nocek, B.' 1 'Duggan, E.' 2 'Clancy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'Crystal structure of the GAF domain region of putative membrane protein from Geobacter sulfurreducens PCA.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nocek, B.' 1 primary 'Duggan, E.' 2 primary 'Clancy, E.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 2QYB _cell.length_a 64.886 _cell.length_b 64.886 _cell.length_c 90.456 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QYB _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Membrane protein, putative' 20879.428 1 ? ? 'GAF Domain: Residues 661-838' ? 2 water nat water 18.015 17 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNAVRLRASEI(MSE)NRTLDLQII(MSE)DDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIE TYIGEAFLSNRLQFVNDTQY(MSE)TKPLTREL(MSE)QKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNL LESLAGQLAQAVKIVTE(MSE)EAKEREREEKERILLENAR ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAVRLRASEIMNRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFL SNRLQFVNDTQYMTKPLTRELMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLESLAGQLAQAVKIVT EMEAKEREREEKERILLENAR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC87689.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 VAL n 1 5 ARG n 1 6 LEU n 1 7 ARG n 1 8 ALA n 1 9 SER n 1 10 GLU n 1 11 ILE n 1 12 MSE n 1 13 ASN n 1 14 ARG n 1 15 THR n 1 16 LEU n 1 17 ASP n 1 18 LEU n 1 19 GLN n 1 20 ILE n 1 21 ILE n 1 22 MSE n 1 23 ASP n 1 24 ASP n 1 25 LEU n 1 26 LEU n 1 27 ASN n 1 28 LEU n 1 29 LEU n 1 30 LEU n 1 31 LYS n 1 32 GLU n 1 33 PHE n 1 34 LYS n 1 35 LEU n 1 36 ASP n 1 37 LEU n 1 38 ALA n 1 39 VAL n 1 40 ILE n 1 41 ARG n 1 42 LEU n 1 43 VAL n 1 44 ASP n 1 45 GLU n 1 46 LYS n 1 47 GLY n 1 48 VAL n 1 49 LEU n 1 50 ARG n 1 51 VAL n 1 52 ARG n 1 53 SER n 1 54 TYR n 1 55 SER n 1 56 GLY n 1 57 LYS n 1 58 GLY n 1 59 ILE n 1 60 ALA n 1 61 GLY n 1 62 ILE n 1 63 ALA n 1 64 GLY n 1 65 LYS n 1 66 ASP n 1 67 TRP n 1 68 GLU n 1 69 PRO n 1 70 GLU n 1 71 ILE n 1 72 GLU n 1 73 THR n 1 74 TYR n 1 75 ILE n 1 76 GLY n 1 77 GLU n 1 78 ALA n 1 79 PHE n 1 80 LEU n 1 81 SER n 1 82 ASN n 1 83 ARG n 1 84 LEU n 1 85 GLN n 1 86 PHE n 1 87 VAL n 1 88 ASN n 1 89 ASP n 1 90 THR n 1 91 GLN n 1 92 TYR n 1 93 MSE n 1 94 THR n 1 95 LYS n 1 96 PRO n 1 97 LEU n 1 98 THR n 1 99 ARG n 1 100 GLU n 1 101 LEU n 1 102 MSE n 1 103 GLN n 1 104 LYS n 1 105 GLU n 1 106 GLY n 1 107 ILE n 1 108 LYS n 1 109 SER n 1 110 PHE n 1 111 ALA n 1 112 HIS n 1 113 ILE n 1 114 PRO n 1 115 ILE n 1 116 SER n 1 117 ARG n 1 118 LYS n 1 119 GLY n 1 120 GLU n 1 121 PRO n 1 122 PRO n 1 123 PHE n 1 124 GLY n 1 125 ILE n 1 126 LEU n 1 127 SER n 1 128 VAL n 1 129 PHE n 1 130 SER n 1 131 ARG n 1 132 THR n 1 133 ILE n 1 134 VAL n 1 135 GLY n 1 136 LEU n 1 137 PHE n 1 138 ASN n 1 139 GLU n 1 140 PRO n 1 141 PHE n 1 142 LEU n 1 143 ASN n 1 144 LEU n 1 145 LEU n 1 146 GLU n 1 147 SER n 1 148 LEU n 1 149 ALA n 1 150 GLY n 1 151 GLN n 1 152 LEU n 1 153 ALA n 1 154 GLN n 1 155 ALA n 1 156 VAL n 1 157 LYS n 1 158 ILE n 1 159 VAL n 1 160 THR n 1 161 GLU n 1 162 MSE n 1 163 GLU n 1 164 ALA n 1 165 LYS n 1 166 GLU n 1 167 ARG n 1 168 GLU n 1 169 ARG n 1 170 GLU n 1 171 GLU n 1 172 LYS n 1 173 GLU n 1 174 ARG n 1 175 ILE n 1 176 LEU n 1 177 LEU n 1 178 GLU n 1 179 ASN n 1 180 ALA n 1 181 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Geobacter _entity_src_gen.pdbx_gene_src_gene GSU1429 _entity_src_gen.gene_src_species 'Geobacter sulfurreducens' _entity_src_gen.gene_src_strain 'PCA, DSM 12127' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Geobacter sulfurreducens PCA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243231 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 51573 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q74D90_GEOSL _struct_ref.pdbx_db_accession Q74D90 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VRLRASEIMNRTLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIETYIGEAFLSNR LQFVNDTQYMTKPLTRELMQKEGIKSFAHIPISRKGEPPFGILSVFSRTIVGLFNEPFLNLLESLAGQLAQAVKIVTEME AKEREREEKERILLENAR ; _struct_ref.pdbx_align_begin 661 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QYB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 181 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q74D90 _struct_ref_seq.db_align_beg 661 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 838 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 179 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QYB SER A 1 ? UNP Q74D90 ? ? 'EXPRESSION TAG' -1 1 1 2QYB ASN A 2 ? UNP Q74D90 ? ? 'EXPRESSION TAG' 0 2 1 2QYB ALA A 3 ? UNP Q74D90 ? ? 'EXPRESSION TAG' 1 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QYB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.63 _exptl_crystal.density_percent_sol 53.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '0.1M Sodium citrate, 20% Isopropanol, 20% PEG 4000, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-08-01 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97940 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97940 # _reflns.entry_id 2QYB _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.4 _reflns.d_resolution_low 30.0 _reflns.number_all 9079 _reflns.number_obs 9079 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.107 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.45 _reflns_shell.percent_possible_all 94.7 _reflns_shell.Rmerge_I_obs 0.622 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2 _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QYB _refine.ls_number_reflns_obs 8528 _refine.ls_number_reflns_all 9079 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.83 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.44 _refine.ls_R_factor_obs 0.20655 _refine.ls_R_factor_all 0.21050 _refine.ls_R_factor_R_work 0.20533 _refine.ls_R_factor_R_free 0.22919 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 427 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.962 _refine.B_iso_mean 33.192 _refine.aniso_B[1][1] -0.36 _refine.aniso_B[2][2] -0.36 _refine.aniso_B[3][3] 0.55 _refine.aniso_B[1][2] -0.18 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.289 _refine.pdbx_overall_ESU_R_Free 0.211 _refine.overall_SU_ML 0.169 _refine.overall_SU_B 15.242 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1197 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 1214 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 26.83 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 1216 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 851 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.628 1.996 ? 1639 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.995 3.000 ? 2085 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.959 5.000 ? 150 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.036 24.423 ? 52 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.710 15.000 ? 234 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.167 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.090 0.200 ? 191 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1316 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 235 'X-RAY DIFFRACTION' ? r_nbd_refined 0.222 0.200 ? 245 'X-RAY DIFFRACTION' ? r_nbd_other 0.199 0.200 ? 878 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.181 0.200 ? 574 'X-RAY DIFFRACTION' ? r_nbtor_other 0.089 0.200 ? 661 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.198 0.200 ? 20 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.257 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.216 0.200 ? 33 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.232 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.053 1.500 ? 918 'X-RAY DIFFRACTION' ? r_mcbond_other 0.168 1.500 ? 306 'X-RAY DIFFRACTION' ? r_mcangle_it 1.298 2.000 ? 1211 'X-RAY DIFFRACTION' ? r_scbond_it 2.126 3.000 ? 510 'X-RAY DIFFRACTION' ? r_scangle_it 3.189 4.500 ? 428 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.number_reflns_R_work 581 _refine_ls_shell.R_factor_R_work 0.249 _refine_ls_shell.percent_reflns_obs 96.21 _refine_ls_shell.R_factor_R_free 0.349 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QYB _struct.title 'Crystal structure of the GAF domain region of putative membrane protein from Geobacter sulfurreducens PCA' _struct.pdbx_descriptor 'Membrane protein, putative' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QYB _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;GAF domain, domain of putative membrane protein, PSI-2, MCSG, Structural Genomics, Protein Structure Initiative, Midwest Center for Structural Genomics, MEMBRANE PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 9 ? PHE A 33 ? SER A 7 PHE A 31 1 ? 25 HELX_P HELX_P2 2 THR A 73 ? ASN A 82 ? THR A 71 ASN A 80 1 ? 10 HELX_P HELX_P3 3 ASP A 89 ? MSE A 93 ? ASP A 87 MSE A 91 5 ? 5 HELX_P HELX_P4 4 LYS A 95 ? GLU A 105 ? LYS A 93 GLU A 103 1 ? 11 HELX_P HELX_P5 5 ASN A 138 ? VAL A 159 ? ASN A 136 VAL A 157 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ILE 11 C ? ? ? 1_555 A MSE 12 N ? ? A ILE 9 A MSE 10 1_555 ? ? ? ? ? ? ? 1.318 ? covale2 covale ? ? A MSE 12 C ? ? ? 1_555 A ASN 13 N ? ? A MSE 10 A ASN 11 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? A ILE 21 C ? ? ? 1_555 A MSE 22 N ? ? A ILE 19 A MSE 20 1_555 ? ? ? ? ? ? ? 1.346 ? covale4 covale ? ? A MSE 22 C ? ? ? 1_555 A ASP 23 N ? ? A MSE 20 A ASP 21 1_555 ? ? ? ? ? ? ? 1.322 ? covale5 covale ? ? A TYR 92 C ? ? ? 1_555 A MSE 93 N ? ? A TYR 90 A MSE 91 1_555 ? ? ? ? ? ? ? 1.310 ? covale6 covale ? ? A MSE 93 C ? ? ? 1_555 A THR 94 N ? ? A MSE 91 A THR 92 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? A LEU 101 C ? ? ? 1_555 A MSE 102 N ? ? A LEU 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.321 ? covale8 covale ? ? A MSE 102 C ? ? ? 1_555 A GLN 103 N ? ? A MSE 100 A GLN 101 1_555 ? ? ? ? ? ? ? 1.343 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 49 ? GLY A 56 ? LEU A 47 GLY A 54 A 2 LEU A 37 ? VAL A 43 ? LEU A 35 VAL A 41 A 3 GLY A 124 ? SER A 130 ? GLY A 122 SER A 128 A 4 SER A 109 ? ILE A 115 ? SER A 107 ILE A 113 A 5 GLN A 85 ? VAL A 87 ? GLN A 83 VAL A 85 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER A 53 ? O SER A 51 N ILE A 40 ? N ILE A 38 A 2 3 N LEU A 37 ? N LEU A 35 O PHE A 129 ? O PHE A 127 A 3 4 O LEU A 126 ? O LEU A 124 N ILE A 113 ? N ILE A 111 A 4 5 O HIS A 112 ? O HIS A 110 N GLN A 85 ? N GLN A 83 # _database_PDB_matrix.entry_id 2QYB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2QYB _atom_sites.fract_transf_matrix[1][1] 0.015412 _atom_sites.fract_transf_matrix[1][2] 0.008898 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017796 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011055 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -1 ? ? ? A . n A 1 2 ASN 2 0 ? ? ? A . n A 1 3 ALA 3 1 ? ? ? A . n A 1 4 VAL 4 2 ? ? ? A . n A 1 5 ARG 5 3 ? ? ? A . n A 1 6 LEU 6 4 ? ? ? A . n A 1 7 ARG 7 5 ? ? ? A . n A 1 8 ALA 8 6 ? ? ? A . n A 1 9 SER 9 7 7 SER SER A . n A 1 10 GLU 10 8 8 GLU GLU A . n A 1 11 ILE 11 9 9 ILE ILE A . n A 1 12 MSE 12 10 10 MSE MSE A . n A 1 13 ASN 13 11 11 ASN ASN A . n A 1 14 ARG 14 12 12 ARG ARG A . n A 1 15 THR 15 13 13 THR THR A . n A 1 16 LEU 16 14 14 LEU LEU A . n A 1 17 ASP 17 15 15 ASP ASP A . n A 1 18 LEU 18 16 16 LEU LEU A . n A 1 19 GLN 19 17 17 GLN GLN A . n A 1 20 ILE 20 18 18 ILE ILE A . n A 1 21 ILE 21 19 19 ILE ILE A . n A 1 22 MSE 22 20 20 MSE MSE A . n A 1 23 ASP 23 21 21 ASP ASP A . n A 1 24 ASP 24 22 22 ASP ASP A . n A 1 25 LEU 25 23 23 LEU LEU A . n A 1 26 LEU 26 24 24 LEU LEU A . n A 1 27 ASN 27 25 25 ASN ASN A . n A 1 28 LEU 28 26 26 LEU LEU A . n A 1 29 LEU 29 27 27 LEU LEU A . n A 1 30 LEU 30 28 28 LEU LEU A . n A 1 31 LYS 31 29 29 LYS LYS A . n A 1 32 GLU 32 30 30 GLU GLU A . n A 1 33 PHE 33 31 31 PHE PHE A . n A 1 34 LYS 34 32 32 LYS LYS A . n A 1 35 LEU 35 33 33 LEU LEU A . n A 1 36 ASP 36 34 34 ASP ASP A . n A 1 37 LEU 37 35 35 LEU LEU A . n A 1 38 ALA 38 36 36 ALA ALA A . n A 1 39 VAL 39 37 37 VAL VAL A . n A 1 40 ILE 40 38 38 ILE ILE A . n A 1 41 ARG 41 39 39 ARG ARG A . n A 1 42 LEU 42 40 40 LEU LEU A . n A 1 43 VAL 43 41 41 VAL VAL A . n A 1 44 ASP 44 42 42 ASP ASP A . n A 1 45 GLU 45 43 43 GLU GLU A . n A 1 46 LYS 46 44 44 LYS LYS A . n A 1 47 GLY 47 45 45 GLY GLY A . n A 1 48 VAL 48 46 46 VAL VAL A . n A 1 49 LEU 49 47 47 LEU LEU A . n A 1 50 ARG 50 48 48 ARG ARG A . n A 1 51 VAL 51 49 49 VAL VAL A . n A 1 52 ARG 52 50 50 ARG ARG A . n A 1 53 SER 53 51 51 SER SER A . n A 1 54 TYR 54 52 52 TYR TYR A . n A 1 55 SER 55 53 53 SER SER A . n A 1 56 GLY 56 54 54 GLY GLY A . n A 1 57 LYS 57 55 55 LYS LYS A . n A 1 58 GLY 58 56 56 GLY GLY A . n A 1 59 ILE 59 57 57 ILE ILE A . n A 1 60 ALA 60 58 58 ALA ALA A . n A 1 61 GLY 61 59 59 GLY GLY A . n A 1 62 ILE 62 60 60 ILE ILE A . n A 1 63 ALA 63 61 61 ALA ALA A . n A 1 64 GLY 64 62 62 GLY GLY A . n A 1 65 LYS 65 63 63 LYS LYS A . n A 1 66 ASP 66 64 64 ASP ASP A . n A 1 67 TRP 67 65 65 TRP TRP A . n A 1 68 GLU 68 66 66 GLU GLU A . n A 1 69 PRO 69 67 67 PRO PRO A . n A 1 70 GLU 70 68 68 GLU GLU A . n A 1 71 ILE 71 69 69 ILE ILE A . n A 1 72 GLU 72 70 70 GLU GLU A . n A 1 73 THR 73 71 71 THR THR A . n A 1 74 TYR 74 72 72 TYR TYR A . n A 1 75 ILE 75 73 73 ILE ILE A . n A 1 76 GLY 76 74 74 GLY GLY A . n A 1 77 GLU 77 75 75 GLU GLU A . n A 1 78 ALA 78 76 76 ALA ALA A . n A 1 79 PHE 79 77 77 PHE PHE A . n A 1 80 LEU 80 78 78 LEU LEU A . n A 1 81 SER 81 79 79 SER SER A . n A 1 82 ASN 82 80 80 ASN ASN A . n A 1 83 ARG 83 81 81 ARG ARG A . n A 1 84 LEU 84 82 82 LEU LEU A . n A 1 85 GLN 85 83 83 GLN GLN A . n A 1 86 PHE 86 84 84 PHE PHE A . n A 1 87 VAL 87 85 85 VAL VAL A . n A 1 88 ASN 88 86 86 ASN ASN A . n A 1 89 ASP 89 87 87 ASP ASP A . n A 1 90 THR 90 88 88 THR THR A . n A 1 91 GLN 91 89 89 GLN GLN A . n A 1 92 TYR 92 90 90 TYR TYR A . n A 1 93 MSE 93 91 91 MSE MSE A . n A 1 94 THR 94 92 92 THR THR A . n A 1 95 LYS 95 93 93 LYS LYS A . n A 1 96 PRO 96 94 94 PRO PRO A . n A 1 97 LEU 97 95 95 LEU LEU A . n A 1 98 THR 98 96 96 THR THR A . n A 1 99 ARG 99 97 97 ARG ARG A . n A 1 100 GLU 100 98 98 GLU GLU A . n A 1 101 LEU 101 99 99 LEU LEU A . n A 1 102 MSE 102 100 100 MSE MSE A . n A 1 103 GLN 103 101 101 GLN GLN A . n A 1 104 LYS 104 102 102 LYS LYS A . n A 1 105 GLU 105 103 103 GLU GLU A . n A 1 106 GLY 106 104 104 GLY GLY A . n A 1 107 ILE 107 105 105 ILE ILE A . n A 1 108 LYS 108 106 106 LYS LYS A . n A 1 109 SER 109 107 107 SER SER A . n A 1 110 PHE 110 108 108 PHE PHE A . n A 1 111 ALA 111 109 109 ALA ALA A . n A 1 112 HIS 112 110 110 HIS HIS A . n A 1 113 ILE 113 111 111 ILE ILE A . n A 1 114 PRO 114 112 112 PRO PRO A . n A 1 115 ILE 115 113 113 ILE ILE A . n A 1 116 SER 116 114 114 SER SER A . n A 1 117 ARG 117 115 115 ARG ARG A . n A 1 118 LYS 118 116 116 LYS LYS A . n A 1 119 GLY 119 117 117 GLY GLY A . n A 1 120 GLU 120 118 118 GLU GLU A . n A 1 121 PRO 121 119 119 PRO PRO A . n A 1 122 PRO 122 120 120 PRO PRO A . n A 1 123 PHE 123 121 121 PHE PHE A . n A 1 124 GLY 124 122 122 GLY GLY A . n A 1 125 ILE 125 123 123 ILE ILE A . n A 1 126 LEU 126 124 124 LEU LEU A . n A 1 127 SER 127 125 125 SER SER A . n A 1 128 VAL 128 126 126 VAL VAL A . n A 1 129 PHE 129 127 127 PHE PHE A . n A 1 130 SER 130 128 128 SER SER A . n A 1 131 ARG 131 129 129 ARG ARG A . n A 1 132 THR 132 130 130 THR THR A . n A 1 133 ILE 133 131 131 ILE ILE A . n A 1 134 VAL 134 132 132 VAL VAL A . n A 1 135 GLY 135 133 133 GLY GLY A . n A 1 136 LEU 136 134 134 LEU LEU A . n A 1 137 PHE 137 135 135 PHE PHE A . n A 1 138 ASN 138 136 136 ASN ASN A . n A 1 139 GLU 139 137 137 GLU GLU A . n A 1 140 PRO 140 138 138 PRO PRO A . n A 1 141 PHE 141 139 139 PHE PHE A . n A 1 142 LEU 142 140 140 LEU LEU A . n A 1 143 ASN 143 141 141 ASN ASN A . n A 1 144 LEU 144 142 142 LEU LEU A . n A 1 145 LEU 145 143 143 LEU LEU A . n A 1 146 GLU 146 144 144 GLU GLU A . n A 1 147 SER 147 145 145 SER SER A . n A 1 148 LEU 148 146 146 LEU LEU A . n A 1 149 ALA 149 147 147 ALA ALA A . n A 1 150 GLY 150 148 148 GLY GLY A . n A 1 151 GLN 151 149 149 GLN GLN A . n A 1 152 LEU 152 150 150 LEU LEU A . n A 1 153 ALA 153 151 151 ALA ALA A . n A 1 154 GLN 154 152 152 GLN GLN A . n A 1 155 ALA 155 153 153 ALA ALA A . n A 1 156 VAL 156 154 154 VAL VAL A . n A 1 157 LYS 157 155 155 LYS LYS A . n A 1 158 ILE 158 156 156 ILE ILE A . n A 1 159 VAL 159 157 157 VAL VAL A . n A 1 160 THR 160 158 ? ? ? A . n A 1 161 GLU 161 159 ? ? ? A . n A 1 162 MSE 162 160 ? ? ? A . n A 1 163 GLU 163 161 ? ? ? A . n A 1 164 ALA 164 162 ? ? ? A . n A 1 165 LYS 165 163 ? ? ? A . n A 1 166 GLU 166 164 ? ? ? A . n A 1 167 ARG 167 165 ? ? ? A . n A 1 168 GLU 168 166 ? ? ? A . n A 1 169 ARG 169 167 ? ? ? A . n A 1 170 GLU 170 168 ? ? ? A . n A 1 171 GLU 171 169 ? ? ? A . n A 1 172 LYS 172 170 ? ? ? A . n A 1 173 GLU 173 171 ? ? ? A . n A 1 174 ARG 174 172 ? ? ? A . n A 1 175 ILE 175 173 ? ? ? A . n A 1 176 LEU 176 174 ? ? ? A . n A 1 177 LEU 177 175 ? ? ? A . n A 1 178 GLU 178 176 ? ? ? A . n A 1 179 ASN 179 177 ? ? ? A . n A 1 180 ALA 180 178 ? ? ? A . n A 1 181 ARG 181 179 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 12 A MSE 10 ? MET SELENOMETHIONINE 2 A MSE 22 A MSE 20 ? MET SELENOMETHIONINE 3 A MSE 93 A MSE 91 ? MET SELENOMETHIONINE 4 A MSE 102 A MSE 100 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 1620 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 30.1520000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-28 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -28.4852 43.6507 11.0490 0.1489 0.1547 0.3399 -0.0024 0.0644 0.0602 41.2163 9.7260 42.5446 4.7867 -11.8012 -1.2837 0.4038 -0.5502 2.1931 -0.8358 0.5118 0.8860 -1.3364 -0.7779 -0.9156 'X-RAY DIFFRACTION' 2 ? refined -20.6779 37.6266 9.8096 0.2198 0.3832 0.1384 -0.0571 -0.0110 0.0315 12.9272 7.8570 0.4704 -2.5508 1.8644 0.8493 0.1248 -0.0186 0.0026 0.0151 -0.3303 0.0646 0.2799 0.0114 0.2055 'X-RAY DIFFRACTION' 3 ? refined -13.0290 33.6994 8.4196 0.1620 0.2956 0.1586 -0.0551 0.0517 0.0798 14.3257 12.7207 7.9429 -1.6663 4.7979 3.4772 -0.1040 0.8338 0.2373 0.3155 -0.2553 0.3050 0.1913 -0.0710 0.3593 'X-RAY DIFFRACTION' 4 ? refined -6.8368 28.0443 5.2415 0.2559 0.2089 0.1899 0.0105 -0.0298 0.0359 20.9653 5.4385 10.8565 3.1923 -9.0195 1.4539 -0.0172 -0.5086 -0.4312 -0.3223 0.3862 -0.0845 0.4989 -0.0495 -0.3690 'X-RAY DIFFRACTION' 5 ? refined -7.0832 36.2433 15.0151 0.2215 0.1802 0.2294 -0.0623 -0.0261 0.0279 2.8861 2.7626 4.4374 -1.2946 -0.6483 2.0782 0.0300 -0.0948 0.0694 0.2372 0.2609 -0.1829 0.0452 0.1531 -0.2909 'X-RAY DIFFRACTION' 6 ? refined -12.2779 39.7287 20.5550 0.2530 0.2419 0.2059 -0.0867 0.0245 0.0680 2.6440 0.0439 4.7952 0.1382 0.8745 0.4521 0.0988 -0.1864 0.0684 0.0966 -0.1096 0.1864 -0.0129 -0.4351 0.0108 'X-RAY DIFFRACTION' 7 ? refined -5.6690 28.5136 21.9016 0.2493 0.2497 0.2408 0.0320 -0.0242 0.1354 12.1587 22.7125 17.0280 5.2456 6.9009 0.7271 -0.0551 -0.0285 -1.2401 1.0534 0.7313 -0.9432 0.8085 0.2846 -0.6762 'X-RAY DIFFRACTION' 8 ? refined -3.3076 43.2320 26.3153 0.2093 0.2413 0.1997 0.0395 -0.0700 0.0024 7.8687 8.9238 8.4597 -0.4880 -5.6596 -4.0258 0.3252 -0.7101 0.5344 0.8075 0.0434 0.0117 -0.4557 0.0247 -0.3686 'X-RAY DIFFRACTION' 9 ? refined 1.5211 46.7871 17.9007 0.2875 0.1755 0.2555 -0.1000 -0.0302 -0.0090 3.2262 1.6217 10.2110 -1.3926 5.2423 -0.9486 -0.2422 0.2379 0.4550 0.2242 0.1251 -0.9429 -0.0482 0.3508 0.1171 'X-RAY DIFFRACTION' 10 ? refined 8.8337 36.3344 15.1565 0.1855 0.4080 0.1963 0.0114 -0.0373 -0.0229 2.0195 1.9458 2.3539 1.1512 0.7696 2.0688 -0.2306 -0.0106 0.4361 -0.4435 0.3318 -0.4786 0.1241 0.6214 -0.1012 'X-RAY DIFFRACTION' 11 ? refined 12.5205 34.6750 24.0201 0.1269 0.2759 0.2310 -0.0500 0.0287 -0.0761 9.4261 6.6187 29.9670 -7.2569 -13.0850 6.5840 0.3157 -0.0201 0.1939 -0.1359 0.2079 -0.2906 -0.8280 0.6469 -0.5236 'X-RAY DIFFRACTION' 12 ? refined 6.9595 30.5705 26.3375 0.2714 0.2402 0.2435 0.0790 -0.0580 0.0264 0.4546 2.5949 9.9940 -0.1619 2.1294 -0.5428 0.0351 0.1670 0.0136 -0.4002 -0.1234 0.3107 0.8078 0.3696 0.0882 'X-RAY DIFFRACTION' 13 ? refined 3.1339 32.8565 17.0181 0.1259 0.2202 0.2090 -0.0211 -0.0972 -0.0503 5.3814 33.2662 13.4373 -12.5446 7.8441 -15.4464 0.2635 0.3738 0.0908 -0.0511 0.1889 0.2310 0.3688 0.1921 -0.4524 'X-RAY DIFFRACTION' 14 ? refined -7.1444 49.7712 10.2037 0.2551 0.3118 0.2328 -0.0552 -0.0454 0.1249 1.0739 14.9041 0.2559 0.8499 -0.2325 1.5264 -0.0220 0.5019 -0.0465 -0.2501 0.2599 0.4497 -0.2969 -0.1401 -0.2379 'X-RAY DIFFRACTION' 15 ? refined 0.8924 30.4037 13.9942 0.2266 0.2384 0.2352 -0.0180 -0.0679 -0.0349 5.7833 9.7909 4.2950 -7.5190 0.1435 -0.4425 0.0180 0.2720 0.0593 0.1594 0.0970 -0.1535 0.4659 0.2988 -0.1150 'X-RAY DIFFRACTION' 16 ? refined 6.7891 34.7146 6.1790 0.1773 0.3150 0.1790 0.0336 0.0187 -0.0143 4.7957 2.6359 19.2547 -3.3481 9.2749 -5.8483 0.5219 -0.0950 0.0936 -0.7121 -0.0365 0.0517 0.3558 0.5575 -0.4855 'X-RAY DIFFRACTION' 17 ? refined -4.0781 41.0972 4.5200 0.2248 0.3228 0.1618 -0.0965 -0.0313 0.0970 23.2234 4.1014 5.7854 -9.7280 -4.8120 2.3716 -0.2898 0.3761 0.5621 -0.3208 0.3760 0.0393 0.1121 -0.0309 -0.0861 'X-RAY DIFFRACTION' 18 ? refined -17.3146 47.5101 7.3669 0.2961 0.2701 0.2637 -0.0089 0.0038 0.1633 20.4830 26.3705 23.3376 -10.6224 -16.2372 -6.3559 0.5758 1.5429 1.0548 -0.9540 0.4433 0.2233 -1.8076 -0.7816 -1.0191 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 7 A 9 A 12 A 14 ? 'X-RAY DIFFRACTION' ? 2 2 A 13 A 15 A 19 A 21 ? 'X-RAY DIFFRACTION' ? 3 3 A 20 A 22 A 24 A 26 ? 'X-RAY DIFFRACTION' ? 4 4 A 25 A 27 A 30 A 32 ? 'X-RAY DIFFRACTION' ? 5 5 A 31 A 33 A 43 A 45 ? 'X-RAY DIFFRACTION' ? 6 6 A 44 A 46 A 53 A 55 ? 'X-RAY DIFFRACTION' ? 7 7 A 54 A 56 A 61 A 63 ? 'X-RAY DIFFRACTION' ? 8 8 A 62 A 64 A 70 A 72 ? 'X-RAY DIFFRACTION' ? 9 9 A 71 A 73 A 82 A 84 ? 'X-RAY DIFFRACTION' ? 10 10 A 83 A 85 A 88 A 90 ? 'X-RAY DIFFRACTION' ? 11 11 A 89 A 91 A 95 A 97 ? 'X-RAY DIFFRACTION' ? 12 12 A 96 A 98 A 102 A 104 ? 'X-RAY DIFFRACTION' ? 13 13 A 103 A 105 A 111 A 113 ? 'X-RAY DIFFRACTION' ? 14 14 A 112 A 114 A 123 A 125 ? 'X-RAY DIFFRACTION' ? 15 15 A 124 A 126 A 131 A 133 ? 'X-RAY DIFFRACTION' ? 16 16 A 132 A 134 A 139 A 141 ? 'X-RAY DIFFRACTION' ? 17 17 A 140 A 142 A 151 A 153 ? 'X-RAY DIFFRACTION' ? 18 18 A 152 A 154 A 157 A 159 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 SHELXD phasing . ? 6 SHELXE 'model building' . ? 7 MLPHARE phasing . ? 8 DM phasing . ? 9 SOLVE phasing . ? 10 RESOLVE phasing . ? 11 ARP/wARP 'model building' . ? 12 CCP4 phasing . ? 13 Coot 'model building' . ? 14 CNS phasing . ? 15 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 SEE REMARK 350 FOR THE PROGRAM GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN THIS ENTRY. AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN FRAGMENT IS UNKNOWN. ; # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 32 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -75.68 _pdbx_validate_torsion.psi 46.27 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -1 ? A SER 1 2 1 Y 1 A ASN 0 ? A ASN 2 3 1 Y 1 A ALA 1 ? A ALA 3 4 1 Y 1 A VAL 2 ? A VAL 4 5 1 Y 1 A ARG 3 ? A ARG 5 6 1 Y 1 A LEU 4 ? A LEU 6 7 1 Y 1 A ARG 5 ? A ARG 7 8 1 Y 1 A ALA 6 ? A ALA 8 9 1 Y 1 A THR 158 ? A THR 160 10 1 Y 1 A GLU 159 ? A GLU 161 11 1 Y 1 A MSE 160 ? A MSE 162 12 1 Y 1 A GLU 161 ? A GLU 163 13 1 Y 1 A ALA 162 ? A ALA 164 14 1 Y 1 A LYS 163 ? A LYS 165 15 1 Y 1 A GLU 164 ? A GLU 166 16 1 Y 1 A ARG 165 ? A ARG 167 17 1 Y 1 A GLU 166 ? A GLU 168 18 1 Y 1 A ARG 167 ? A ARG 169 19 1 Y 1 A GLU 168 ? A GLU 170 20 1 Y 1 A GLU 169 ? A GLU 171 21 1 Y 1 A LYS 170 ? A LYS 172 22 1 Y 1 A GLU 171 ? A GLU 173 23 1 Y 1 A ARG 172 ? A ARG 174 24 1 Y 1 A ILE 173 ? A ILE 175 25 1 Y 1 A LEU 174 ? A LEU 176 26 1 Y 1 A LEU 175 ? A LEU 177 27 1 Y 1 A GLU 176 ? A GLU 178 28 1 Y 1 A ASN 177 ? A ASN 179 29 1 Y 1 A ALA 178 ? A ALA 180 30 1 Y 1 A ARG 179 ? A ARG 181 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 180 1 HOH HOH A . B 2 HOH 2 181 2 HOH HOH A . B 2 HOH 3 182 3 HOH HOH A . B 2 HOH 4 183 5 HOH HOH A . B 2 HOH 5 184 7 HOH HOH A . B 2 HOH 6 185 8 HOH HOH A . B 2 HOH 7 186 9 HOH HOH A . B 2 HOH 8 187 10 HOH HOH A . B 2 HOH 9 188 11 HOH HOH A . B 2 HOH 10 189 13 HOH HOH A . B 2 HOH 11 190 14 HOH HOH A . B 2 HOH 12 191 15 HOH HOH A . B 2 HOH 13 192 16 HOH HOH A . B 2 HOH 14 193 17 HOH HOH A . B 2 HOH 15 194 18 HOH HOH A . B 2 HOH 16 195 19 HOH HOH A . B 2 HOH 17 196 20 HOH HOH A . #