HEADER MEMBRANE PROTEIN 14-AUG-07 2QYB TITLE CRYSTAL STRUCTURE OF THE GAF DOMAIN REGION OF PUTATIVE MEMBRANE TITLE 2 PROTEIN FROM GEOBACTER SULFURREDUCENS PCA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE PROTEIN, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAF DOMAIN: RESIDUES 661-838; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS PCA; SOURCE 3 ORGANISM_TAXID: 243231; SOURCE 4 STRAIN: PCA, DSM 12127; SOURCE 5 ATCC: 51573; SOURCE 6 GENE: GSU1429; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS GAF DOMAIN, DOMAIN OF PUTATIVE MEMBRANE PROTEIN, PSI-2, MCSG, KEYWDS 2 STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,E.DUGGAN,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 13-JUL-11 2QYB 1 VERSN REVDAT 2 24-FEB-09 2QYB 1 VERSN REVDAT 1 28-AUG-07 2QYB 0 JRNL AUTH B.NOCEK,E.DUGGAN,E.CLANCY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THE GAF DOMAIN REGION OF PUTATIVE JRNL TITL 2 MEMBRANE PROTEIN FROM GEOBACTER SULFURREDUCENS PCA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 8528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 427 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 581 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1197 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : -0.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.242 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1216 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 851 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1639 ; 1.628 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2085 ; 0.995 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 150 ; 6.959 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;34.036 ;24.423 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 234 ;17.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.167 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 191 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1316 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 235 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 245 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 878 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 574 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 661 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 20 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.257 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.216 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.232 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 918 ; 1.053 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 306 ; 0.168 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1211 ; 1.298 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 510 ; 2.126 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 428 ; 3.189 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): -28.4852 43.6507 11.0490 REMARK 3 T TENSOR REMARK 3 T11: 0.1489 T22: 0.1547 REMARK 3 T33: 0.3399 T12: -0.0024 REMARK 3 T13: 0.0644 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 41.2163 L22: 9.7260 REMARK 3 L33: 42.5446 L12: 4.7867 REMARK 3 L13: -11.8012 L23: -1.2837 REMARK 3 S TENSOR REMARK 3 S11: 0.4038 S12: -0.5502 S13: 2.1931 REMARK 3 S21: -0.8358 S22: 0.5118 S23: 0.8860 REMARK 3 S31: -1.3364 S32: -0.7779 S33: -0.9156 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): -20.6779 37.6266 9.8096 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.3832 REMARK 3 T33: 0.1384 T12: -0.0571 REMARK 3 T13: -0.0110 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 12.9272 L22: 7.8570 REMARK 3 L33: 0.4704 L12: -2.5508 REMARK 3 L13: 1.8644 L23: 0.8493 REMARK 3 S TENSOR REMARK 3 S11: 0.1248 S12: -0.0186 S13: 0.0026 REMARK 3 S21: 0.0151 S22: -0.3303 S23: 0.0646 REMARK 3 S31: 0.2799 S32: 0.0114 S33: 0.2055 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): -13.0290 33.6994 8.4196 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.2956 REMARK 3 T33: 0.1586 T12: -0.0551 REMARK 3 T13: 0.0517 T23: 0.0798 REMARK 3 L TENSOR REMARK 3 L11: 14.3257 L22: 12.7207 REMARK 3 L33: 7.9429 L12: -1.6663 REMARK 3 L13: 4.7979 L23: 3.4772 REMARK 3 S TENSOR REMARK 3 S11: -0.1040 S12: 0.8338 S13: 0.2373 REMARK 3 S21: 0.3155 S22: -0.2553 S23: 0.3050 REMARK 3 S31: 0.1913 S32: -0.0710 S33: 0.3593 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8368 28.0443 5.2415 REMARK 3 T TENSOR REMARK 3 T11: 0.2559 T22: 0.2089 REMARK 3 T33: 0.1899 T12: 0.0105 REMARK 3 T13: -0.0298 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 20.9653 L22: 5.4385 REMARK 3 L33: 10.8565 L12: 3.1923 REMARK 3 L13: -9.0195 L23: 1.4539 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: -0.5086 S13: -0.4312 REMARK 3 S21: -0.3223 S22: 0.3862 S23: -0.0845 REMARK 3 S31: 0.4989 S32: -0.0495 S33: -0.3690 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0832 36.2433 15.0151 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.1802 REMARK 3 T33: 0.2294 T12: -0.0623 REMARK 3 T13: -0.0261 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 2.8861 L22: 2.7626 REMARK 3 L33: 4.4374 L12: -1.2946 REMARK 3 L13: -0.6483 L23: 2.0782 REMARK 3 S TENSOR REMARK 3 S11: 0.0300 S12: -0.0948 S13: 0.0694 REMARK 3 S21: 0.2372 S22: 0.2609 S23: -0.1829 REMARK 3 S31: 0.0452 S32: 0.1531 S33: -0.2909 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2779 39.7287 20.5550 REMARK 3 T TENSOR REMARK 3 T11: 0.2530 T22: 0.2419 REMARK 3 T33: 0.2059 T12: -0.0867 REMARK 3 T13: 0.0245 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 2.6440 L22: 0.0439 REMARK 3 L33: 4.7952 L12: 0.1382 REMARK 3 L13: 0.8745 L23: 0.4521 REMARK 3 S TENSOR REMARK 3 S11: 0.0988 S12: -0.1864 S13: 0.0684 REMARK 3 S21: 0.0966 S22: -0.1096 S23: 0.1864 REMARK 3 S31: -0.0129 S32: -0.4351 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6690 28.5136 21.9016 REMARK 3 T TENSOR REMARK 3 T11: 0.2493 T22: 0.2497 REMARK 3 T33: 0.2408 T12: 0.0320 REMARK 3 T13: -0.0242 T23: 0.1354 REMARK 3 L TENSOR REMARK 3 L11: 12.1587 L22: 22.7125 REMARK 3 L33: 17.0280 L12: 5.2456 REMARK 3 L13: 6.9009 L23: 0.7271 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: -0.0285 S13: -1.2401 REMARK 3 S21: 1.0534 S22: 0.7313 S23: -0.9432 REMARK 3 S31: 0.8085 S32: 0.2846 S33: -0.6762 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3076 43.2320 26.3153 REMARK 3 T TENSOR REMARK 3 T11: 0.2093 T22: 0.2413 REMARK 3 T33: 0.1997 T12: 0.0395 REMARK 3 T13: -0.0700 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 7.8687 L22: 8.9238 REMARK 3 L33: 8.4597 L12: -0.4880 REMARK 3 L13: -5.6596 L23: -4.0258 REMARK 3 S TENSOR REMARK 3 S11: 0.3252 S12: -0.7101 S13: 0.5344 REMARK 3 S21: 0.8075 S22: 0.0434 S23: 0.0117 REMARK 3 S31: -0.4557 S32: 0.0247 S33: -0.3686 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 1.5211 46.7871 17.9007 REMARK 3 T TENSOR REMARK 3 T11: 0.2875 T22: 0.1755 REMARK 3 T33: 0.2555 T12: -0.1000 REMARK 3 T13: -0.0302 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 3.2262 L22: 1.6217 REMARK 3 L33: 10.2110 L12: -1.3926 REMARK 3 L13: 5.2423 L23: -0.9486 REMARK 3 S TENSOR REMARK 3 S11: -0.2422 S12: 0.2379 S13: 0.4550 REMARK 3 S21: 0.2242 S22: 0.1251 S23: -0.9429 REMARK 3 S31: -0.0482 S32: 0.3508 S33: 0.1171 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8337 36.3344 15.1565 REMARK 3 T TENSOR REMARK 3 T11: 0.1855 T22: 0.4080 REMARK 3 T33: 0.1963 T12: 0.0114 REMARK 3 T13: -0.0373 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 2.0195 L22: 1.9458 REMARK 3 L33: 2.3539 L12: 1.1512 REMARK 3 L13: 0.7696 L23: 2.0688 REMARK 3 S TENSOR REMARK 3 S11: -0.2306 S12: -0.0106 S13: 0.4361 REMARK 3 S21: -0.4435 S22: 0.3318 S23: -0.4786 REMARK 3 S31: 0.1241 S32: 0.6214 S33: -0.1012 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5205 34.6750 24.0201 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.2759 REMARK 3 T33: 0.2310 T12: -0.0500 REMARK 3 T13: 0.0287 T23: -0.0761 REMARK 3 L TENSOR REMARK 3 L11: 9.4261 L22: 6.6187 REMARK 3 L33: 29.9670 L12: -7.2569 REMARK 3 L13: -13.0850 L23: 6.5840 REMARK 3 S TENSOR REMARK 3 S11: 0.3157 S12: -0.0201 S13: 0.1939 REMARK 3 S21: -0.1359 S22: 0.2079 S23: -0.2906 REMARK 3 S31: -0.8280 S32: 0.6469 S33: -0.5236 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9595 30.5705 26.3375 REMARK 3 T TENSOR REMARK 3 T11: 0.2714 T22: 0.2402 REMARK 3 T33: 0.2435 T12: 0.0790 REMARK 3 T13: -0.0580 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.4546 L22: 2.5949 REMARK 3 L33: 9.9940 L12: -0.1619 REMARK 3 L13: 2.1294 L23: -0.5428 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: 0.1670 S13: 0.0136 REMARK 3 S21: -0.4002 S22: -0.1234 S23: 0.3107 REMARK 3 S31: 0.8078 S32: 0.3696 S33: 0.0882 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1339 32.8565 17.0181 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.2202 REMARK 3 T33: 0.2090 T12: -0.0211 REMARK 3 T13: -0.0972 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 5.3814 L22: 33.2662 REMARK 3 L33: 13.4373 L12: -12.5446 REMARK 3 L13: 7.8441 L23: -15.4464 REMARK 3 S TENSOR REMARK 3 S11: 0.2635 S12: 0.3738 S13: 0.0908 REMARK 3 S21: -0.0511 S22: 0.1889 S23: 0.2310 REMARK 3 S31: 0.3688 S32: 0.1921 S33: -0.4524 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1444 49.7712 10.2037 REMARK 3 T TENSOR REMARK 3 T11: 0.2551 T22: 0.3118 REMARK 3 T33: 0.2328 T12: -0.0552 REMARK 3 T13: -0.0454 T23: 0.1249 REMARK 3 L TENSOR REMARK 3 L11: 1.0739 L22: 14.9041 REMARK 3 L33: 0.2559 L12: 0.8499 REMARK 3 L13: -0.2325 L23: 1.5264 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: 0.5019 S13: -0.0465 REMARK 3 S21: -0.2501 S22: 0.2599 S23: 0.4497 REMARK 3 S31: -0.2969 S32: -0.1401 S33: -0.2379 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8924 30.4037 13.9942 REMARK 3 T TENSOR REMARK 3 T11: 0.2266 T22: 0.2384 REMARK 3 T33: 0.2352 T12: -0.0180 REMARK 3 T13: -0.0679 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 5.7833 L22: 9.7909 REMARK 3 L33: 4.2950 L12: -7.5190 REMARK 3 L13: 0.1435 L23: -0.4425 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: 0.2720 S13: 0.0593 REMARK 3 S21: 0.1594 S22: 0.0970 S23: -0.1535 REMARK 3 S31: 0.4659 S32: 0.2988 S33: -0.1150 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 132 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 6.7891 34.7146 6.1790 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.3150 REMARK 3 T33: 0.1790 T12: 0.0336 REMARK 3 T13: 0.0187 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 4.7957 L22: 2.6359 REMARK 3 L33: 19.2547 L12: -3.3481 REMARK 3 L13: 9.2749 L23: -5.8483 REMARK 3 S TENSOR REMARK 3 S11: 0.5219 S12: -0.0950 S13: 0.0936 REMARK 3 S21: -0.7121 S22: -0.0365 S23: 0.0517 REMARK 3 S31: 0.3558 S32: 0.5575 S33: -0.4855 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0781 41.0972 4.5200 REMARK 3 T TENSOR REMARK 3 T11: 0.2248 T22: 0.3228 REMARK 3 T33: 0.1618 T12: -0.0965 REMARK 3 T13: -0.0313 T23: 0.0970 REMARK 3 L TENSOR REMARK 3 L11: 23.2234 L22: 4.1014 REMARK 3 L33: 5.7854 L12: -9.7280 REMARK 3 L13: -4.8120 L23: 2.3716 REMARK 3 S TENSOR REMARK 3 S11: -0.2898 S12: 0.3761 S13: 0.5621 REMARK 3 S21: -0.3208 S22: 0.3760 S23: 0.0393 REMARK 3 S31: 0.1121 S32: -0.0309 S33: -0.0861 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): -17.3146 47.5101 7.3669 REMARK 3 T TENSOR REMARK 3 T11: 0.2961 T22: 0.2701 REMARK 3 T33: 0.2637 T12: -0.0089 REMARK 3 T13: 0.0038 T23: 0.1633 REMARK 3 L TENSOR REMARK 3 L11: 20.4830 L22: 26.3705 REMARK 3 L33: 23.3376 L12: -10.6224 REMARK 3 L13: -16.2372 L23: -6.3559 REMARK 3 S TENSOR REMARK 3 S11: 0.5758 S12: 1.5429 S13: 1.0548 REMARK 3 S21: -0.9540 S22: 0.4433 S23: 0.2233 REMARK 3 S31: -1.8076 S32: -0.7816 S33: -1.0191 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB044197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9079 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.62200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, SHELXE, MLPHARE, DM, SOLVE/ REMARK 200 RESOLVE, ARP/WARP, CCP4, COOT, CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 20% ISOPROPANOL, REMARK 280 20% PEG 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.15200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.30400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.30400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.15200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE PROGRAM GENERATED ASSEMBLY REMARK 300 INFORMATION FOR THE STRUCTURE IN THIS ENTRY. REMARK 300 AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS REMARK 300 PROTEIN FRAGMENT IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 30.15200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 ASN A 0 REMARK 465 ALA A 1 REMARK 465 VAL A 2 REMARK 465 ARG A 3 REMARK 465 LEU A 4 REMARK 465 ARG A 5 REMARK 465 ALA A 6 REMARK 465 THR A 158 REMARK 465 GLU A 159 REMARK 465 MSE A 160 REMARK 465 GLU A 161 REMARK 465 ALA A 162 REMARK 465 LYS A 163 REMARK 465 GLU A 164 REMARK 465 ARG A 165 REMARK 465 GLU A 166 REMARK 465 ARG A 167 REMARK 465 GLU A 168 REMARK 465 GLU A 169 REMARK 465 LYS A 170 REMARK 465 GLU A 171 REMARK 465 ARG A 172 REMARK 465 ILE A 173 REMARK 465 LEU A 174 REMARK 465 LEU A 175 REMARK 465 GLU A 176 REMARK 465 ASN A 177 REMARK 465 ALA A 178 REMARK 465 ARG A 179 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 46.27 -75.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC87689.1 RELATED DB: TARGETDB DBREF 2QYB A 2 179 UNP Q74D90 Q74D90_GEOSL 661 838 SEQADV 2QYB SER A -1 UNP Q74D90 EXPRESSION TAG SEQADV 2QYB ASN A 0 UNP Q74D90 EXPRESSION TAG SEQADV 2QYB ALA A 1 UNP Q74D90 EXPRESSION TAG SEQRES 1 A 181 SER ASN ALA VAL ARG LEU ARG ALA SER GLU ILE MSE ASN SEQRES 2 A 181 ARG THR LEU ASP LEU GLN ILE ILE MSE ASP ASP LEU LEU SEQRES 3 A 181 ASN LEU LEU LEU LYS GLU PHE LYS LEU ASP LEU ALA VAL SEQRES 4 A 181 ILE ARG LEU VAL ASP GLU LYS GLY VAL LEU ARG VAL ARG SEQRES 5 A 181 SER TYR SER GLY LYS GLY ILE ALA GLY ILE ALA GLY LYS SEQRES 6 A 181 ASP TRP GLU PRO GLU ILE GLU THR TYR ILE GLY GLU ALA SEQRES 7 A 181 PHE LEU SER ASN ARG LEU GLN PHE VAL ASN ASP THR GLN SEQRES 8 A 181 TYR MSE THR LYS PRO LEU THR ARG GLU LEU MSE GLN LYS SEQRES 9 A 181 GLU GLY ILE LYS SER PHE ALA HIS ILE PRO ILE SER ARG SEQRES 10 A 181 LYS GLY GLU PRO PRO PHE GLY ILE LEU SER VAL PHE SER SEQRES 11 A 181 ARG THR ILE VAL GLY LEU PHE ASN GLU PRO PHE LEU ASN SEQRES 12 A 181 LEU LEU GLU SER LEU ALA GLY GLN LEU ALA GLN ALA VAL SEQRES 13 A 181 LYS ILE VAL THR GLU MSE GLU ALA LYS GLU ARG GLU ARG SEQRES 14 A 181 GLU GLU LYS GLU ARG ILE LEU LEU GLU ASN ALA ARG MODRES 2QYB MSE A 10 MET SELENOMETHIONINE MODRES 2QYB MSE A 20 MET SELENOMETHIONINE MODRES 2QYB MSE A 91 MET SELENOMETHIONINE MODRES 2QYB MSE A 100 MET SELENOMETHIONINE HET MSE A 10 8 HET MSE A 20 8 HET MSE A 91 8 HET MSE A 100 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 HOH *17(H2 O) HELIX 1 1 SER A 7 PHE A 31 1 25 HELIX 2 2 THR A 71 ASN A 80 1 10 HELIX 3 3 ASP A 87 MSE A 91 5 5 HELIX 4 4 LYS A 93 GLU A 103 1 11 HELIX 5 5 ASN A 136 VAL A 157 1 22 SHEET 1 A 5 LEU A 47 GLY A 54 0 SHEET 2 A 5 LEU A 35 VAL A 41 -1 N ILE A 38 O SER A 51 SHEET 3 A 5 GLY A 122 SER A 128 -1 O PHE A 127 N LEU A 35 SHEET 4 A 5 SER A 107 ILE A 113 -1 N ILE A 111 O LEU A 124 SHEET 5 A 5 GLN A 83 VAL A 85 -1 N GLN A 83 O HIS A 110 LINK C ILE A 9 N MSE A 10 1555 1555 1.32 LINK C MSE A 10 N ASN A 11 1555 1555 1.33 LINK C ILE A 19 N MSE A 20 1555 1555 1.35 LINK C MSE A 20 N ASP A 21 1555 1555 1.32 LINK C TYR A 90 N MSE A 91 1555 1555 1.31 LINK C MSE A 91 N THR A 92 1555 1555 1.33 LINK C LEU A 99 N MSE A 100 1555 1555 1.32 LINK C MSE A 100 N GLN A 101 1555 1555 1.34 CRYST1 64.886 64.886 90.456 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015412 0.008898 0.000000 0.00000 SCALE2 0.000000 0.017796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011055 0.00000