HEADER UNKNOWN FUNCTION 14-AUG-07 2QYC TITLE CRYSTAL STRUCTURE OF A DIMERIC FERREDOXIN-LIKE PROTEIN (BB1511) FROM TITLE 2 BORDETELLA BRONCHISEPTICA RB50 AT 1.90 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA BRONCHISEPTICA RB50; SOURCE 3 ORGANISM_TAXID: 257310; SOURCE 4 STRAIN: RB50, NCTC 13252; SOURCE 5 ATCC: BAA-588; SOURCE 6 GENE: NP_888056.1, BB1511; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRESS RESPONSIVE A/B BARREL DOMAIN, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2QYC 1 REMARK SEQADV REVDAT 6 24-JUL-19 2QYC 1 REMARK LINK REVDAT 5 25-OCT-17 2QYC 1 REMARK REVDAT 4 13-JUL-11 2QYC 1 VERSN REVDAT 3 23-MAR-11 2QYC 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2QYC 1 VERSN REVDAT 1 28-AUG-07 2QYC 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF DIMERIC FERREDOXIN-LIKE PROTEIN JRNL TITL 2 (NP_888056.1) FROM BORDETELLA BRONCHISEPTICA AT 1.90 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 881 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1185 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1563 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.21000 REMARK 3 B22 (A**2) : 1.21000 REMARK 3 B33 (A**2) : -1.81000 REMARK 3 B12 (A**2) : 0.60000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1656 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1101 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2242 ; 1.678 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2647 ; 0.950 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 214 ; 6.169 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;21.700 ;22.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 254 ;13.841 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.065 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 239 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1900 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 385 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 325 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1131 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 785 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 897 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 81 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.239 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1068 ; 2.772 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 424 ; 0.705 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1644 ; 3.494 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 671 ; 6.312 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 593 ; 7.891 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9510 32.7050 4.8840 REMARK 3 T TENSOR REMARK 3 T11: -0.0197 T22: -0.0193 REMARK 3 T33: -0.0438 T12: 0.0034 REMARK 3 T13: 0.0076 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.6199 L22: 2.0039 REMARK 3 L33: 1.8591 L12: 0.6640 REMARK 3 L13: 0.2381 L23: 0.7148 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: 0.1283 S13: -0.0051 REMARK 3 S21: -0.1410 S22: 0.0973 S23: -0.0596 REMARK 3 S31: 0.0413 S32: 0.0338 S33: -0.0570 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1290 31.3650 25.2300 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: -0.0622 REMARK 3 T33: 0.0028 T12: 0.0158 REMARK 3 T13: -0.0038 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.4233 L22: 0.3220 REMARK 3 L33: 0.8226 L12: -0.2389 REMARK 3 L13: 0.1431 L23: 0.2292 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: 0.0020 S13: 0.0017 REMARK 3 S21: 0.0341 S22: 0.0370 S23: 0.0177 REMARK 3 S31: 0.1585 S32: 0.0227 S33: -0.0005 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. CL, ACETATE, AND ETHYLENE GLYCOL ARE MODELED BASED ON REMARK 3 CRYSTALLIZATION AND CRYO CONDITIONS. REMARK 4 REMARK 4 2QYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97926 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17516 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.433 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.040 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M LI2SO4, 2.5M NACL, 0.1M REMARK 280 ACETATE PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.78000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.39000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.39000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 94.78000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. CRYSTAL STRUCTURE PACKING SUGGESTS REMARK 300 THAT THE BIOLOGICALLY RELEVANT FORM IS A DIMER. REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF REMARK 300 A DIMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7330 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 88.02282 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 47.39000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C ACT B 104 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 111 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 102 REMARK 465 GLY B 102 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 14 OD1 OD2 REMARK 470 ASP A 17 CG OD1 OD2 REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 101 CG1 CG2 CD1 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 GLU B 97 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 52 O HOH B 147 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 50 47.02 -94.55 REMARK 500 ARG B 50 45.54 -94.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 104 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 378277 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2QYC A 1 102 UNP Q7WM81 Q7WM81_BORBR 1 102 DBREF 2QYC B 1 102 UNP Q7WM81 Q7WM81_BORBR 1 102 SEQADV 2QYC GLY A 0 UNP Q7WM81 EXPRESSION TAG SEQADV 2QYC GLY B 0 UNP Q7WM81 EXPRESSION TAG SEQRES 1 A 103 GLY MSE THR MSE PHE LEU HIS VAL VAL MSE MSE GLU PHE SEQRES 2 A 103 ASP ASP GLY ILE ASP ALA GLY PHE PHE ARG THR VAL ASP SEQRES 3 A 103 GLU TYR VAL ALA ARG MSE LYS ARG GLU CYS ASP GLY LEU SEQRES 4 A 103 LEU LEU TYR HIS PHE GLY GLU ASN VAL ALA ALA ARG SER SEQRES 5 A 103 GLN GLY TYR THR HIS ALA THR SER SER ALA PHE VAL ASP SEQRES 6 A 103 ALA ALA ALA HIS ASP ALA TYR GLN VAL CYS PRO ALA HIS SEQRES 7 A 103 VAL ALA MSE LYS ALA PHE MSE GLY PRO ARG ILE LYS ARG SEQRES 8 A 103 VAL VAL VAL TYR ASP GLY GLU VAL PRO ALA ILE GLY SEQRES 1 B 103 GLY MSE THR MSE PHE LEU HIS VAL VAL MSE MSE GLU PHE SEQRES 2 B 103 ASP ASP GLY ILE ASP ALA GLY PHE PHE ARG THR VAL ASP SEQRES 3 B 103 GLU TYR VAL ALA ARG MSE LYS ARG GLU CYS ASP GLY LEU SEQRES 4 B 103 LEU LEU TYR HIS PHE GLY GLU ASN VAL ALA ALA ARG SER SEQRES 5 B 103 GLN GLY TYR THR HIS ALA THR SER SER ALA PHE VAL ASP SEQRES 6 B 103 ALA ALA ALA HIS ASP ALA TYR GLN VAL CYS PRO ALA HIS SEQRES 7 B 103 VAL ALA MSE LYS ALA PHE MSE GLY PRO ARG ILE LYS ARG SEQRES 8 B 103 VAL VAL VAL TYR ASP GLY GLU VAL PRO ALA ILE GLY MODRES 2QYC MSE A 1 MET SELENOMETHIONINE MODRES 2QYC MSE A 3 MET SELENOMETHIONINE MODRES 2QYC MSE A 9 MET SELENOMETHIONINE MODRES 2QYC MSE A 10 MET SELENOMETHIONINE MODRES 2QYC MSE A 31 MET SELENOMETHIONINE MODRES 2QYC MSE A 80 MET SELENOMETHIONINE MODRES 2QYC MSE A 84 MET SELENOMETHIONINE MODRES 2QYC MSE B 1 MET SELENOMETHIONINE MODRES 2QYC MSE B 3 MET SELENOMETHIONINE MODRES 2QYC MSE B 9 MET SELENOMETHIONINE MODRES 2QYC MSE B 10 MET SELENOMETHIONINE MODRES 2QYC MSE B 31 MET SELENOMETHIONINE MODRES 2QYC MSE B 80 MET SELENOMETHIONINE MODRES 2QYC MSE B 84 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 3 8 HET MSE A 9 8 HET MSE A 10 8 HET MSE A 31 8 HET MSE A 80 8 HET MSE A 84 8 HET MSE B 1 8 HET MSE B 3 8 HET MSE B 9 8 HET MSE B 10 8 HET MSE B 31 8 HET MSE B 80 13 HET MSE B 84 8 HET EDO A 103 4 HET EDO A 104 4 HET CL B 103 1 HET ACT B 104 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 CL CL 1- FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 HOH *120(H2 O) HELIX 1 1 ASP A 17 CYS A 35 1 19 HELIX 2 2 ASP A 64 GLN A 72 1 9 HELIX 3 3 CYS A 74 GLY A 85 1 12 HELIX 4 4 GLY B 19 CYS B 35 1 17 HELIX 5 5 ASP B 64 VAL B 73 1 10 HELIX 6 6 CYS B 74 GLY B 85 1 12 SHEET 1 A 4 LEU A 38 GLU A 45 0 SHEET 2 A 4 HIS A 56 PHE A 62 -1 O ALA A 61 N LEU A 39 SHEET 3 A 4 THR A 2 PHE A 12 -1 N HIS A 6 O SER A 60 SHEET 4 A 4 ILE A 88 PRO A 99 -1 O TYR A 94 N VAL A 7 SHEET 1 B 4 LEU B 38 GLU B 45 0 SHEET 2 B 4 HIS B 56 PHE B 62 -1 O ALA B 61 N LEU B 39 SHEET 3 B 4 THR B 2 PHE B 12 -1 N VAL B 8 O THR B 58 SHEET 4 B 4 ILE B 88 PRO B 99 -1 O GLY B 96 N LEU B 5 SSBOND 1 CYS A 35 CYS A 74 1555 1555 2.09 SSBOND 2 CYS B 35 CYS B 74 1555 1555 2.05 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C THR A 2 N MSE A 3 1555 1555 1.33 LINK C MSE A 3 N PHE A 4 1555 1555 1.32 LINK C VAL A 8 N MSE A 9 1555 1555 1.32 LINK C MSE A 9 N MSE A 10 1555 1555 1.33 LINK C MSE A 10 N GLU A 11 1555 1555 1.33 LINK C ARG A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N LYS A 32 1555 1555 1.32 LINK C ALA A 79 N MSE A 80 1555 1555 1.33 LINK C MSE A 80 N LYS A 81 1555 1555 1.34 LINK C PHE A 83 N MSE A 84 1555 1555 1.33 LINK C MSE A 84 N GLY A 85 1555 1555 1.34 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N THR B 2 1555 1555 1.33 LINK C THR B 2 N MSE B 3 1555 1555 1.32 LINK C MSE B 3 N PHE B 4 1555 1555 1.33 LINK C VAL B 8 N MSE B 9 1555 1555 1.32 LINK C MSE B 9 N MSE B 10 1555 1555 1.33 LINK C MSE B 10 N GLU B 11 1555 1555 1.32 LINK C ARG B 30 N MSE B 31 1555 1555 1.33 LINK C MSE B 31 N LYS B 32 1555 1555 1.32 LINK C ALA B 79 N MSE B 80 1555 1555 1.33 LINK C MSE B 80 N LYS B 81 1555 1555 1.33 LINK C PHE B 83 N MSE B 84 1555 1555 1.34 LINK C MSE B 84 N GLY B 85 1555 1555 1.33 SITE 1 AC1 2 ASP B 17 ARG B 87 SITE 1 AC2 3 THR A 2 GLU A 97 HIS B 42 SITE 1 AC3 5 HIS A 6 ASP A 95 ARG B 22 ALA B 49 SITE 2 AC3 5 ARG B 50 SITE 1 AC4 8 HIS A 6 VAL A 8 TYR A 71 HIS A 77 SITE 2 AC4 8 LYS A 81 HOH A 109 HOH A 112 ARG B 50 CRYST1 50.820 50.820 142.170 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019680 0.011360 0.000000 0.00000 SCALE2 0.000000 0.022720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007030 0.00000