HEADER HYDROLASE 15-AUG-07 2QYK TITLE CRYSTAL STRUCTURE OF PDE4A10 IN COMPLEX WITH INHIBITOR NPV COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC AMP-SPECIFIC PHOSPHODIESTERASE HSPDE4A10; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN OF PDE4A10 WITH RESIDUES 290-622; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE4A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PDE4 INHIBITOR, SUBFAMILY INHIBITOR SELECTIVITY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,M.PENG,Y.CHEN,J.GENG,H.ROBINSON,M.HOUSLAY REVDAT 4 03-APR-24 2QYK 1 REMARK REVDAT 3 21-FEB-24 2QYK 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2QYK 1 VERSN REVDAT 1 08-APR-08 2QYK 0 JRNL AUTH H.WANG,M.S.PENG,Y.CHEN,J.GENG,H.ROBINSON,M.D.HOUSLAY,J.CAI, JRNL AUTH 2 H.KE JRNL TITL STRUCTURES OF THE FOUR SUBFAMILIES OF PHOSPHODIESTERASE-4 JRNL TITL 2 PROVIDE INSIGHT INTO THE SELECTIVITY OF THEIR INHIBITORS. JRNL REF BIOCHEM.J. V. 408 193 2007 JRNL REFN ISSN 0264-6021 JRNL PMID 17727341 JRNL DOI 10.1042/BJ20070970 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 53788 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5380 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5404 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55625 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.60 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDE4D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG400, 200 MM MG ACETATE, 0.1M REMARK 280 TRIS HCL PH 8.5, 5% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.05150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.72150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.72150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.52575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.72150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.72150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 124.57725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.72150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.72150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.52575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.72150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.72150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 124.57725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.05150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 288 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 451 NZ LYS A 451 7555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 300 54.01 -141.11 REMARK 500 ARG A 328 56.45 -94.98 REMARK 500 ASP A 437 11.99 58.38 REMARK 500 LEU A 531 44.99 -107.37 REMARK 500 ILE A 588 -66.93 -121.22 REMARK 500 ASP B 437 11.40 54.84 REMARK 500 SER B 506 -6.58 -56.98 REMARK 500 THR B 574 -22.59 -151.09 REMARK 500 ILE B 588 -62.49 -122.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 376 NE2 REMARK 620 2 HIS A 412 NE2 96.6 REMARK 620 3 ASP A 413 OD2 88.6 84.2 REMARK 620 4 ASP A 530 OD1 92.7 88.8 172.9 REMARK 620 5 HOH A 623 O 163.9 99.5 91.6 89.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 413 OD1 REMARK 620 2 HOH A 623 O 93.7 REMARK 620 3 HOH A 625 O 97.2 84.8 REMARK 620 4 HOH A 626 O 168.7 86.9 94.1 REMARK 620 5 HOH A 627 O 92.4 173.5 92.1 87.5 REMARK 620 6 HOH A 628 O 84.4 93.2 177.5 84.3 89.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 376 NE2 REMARK 620 2 HIS B 412 NE2 98.7 REMARK 620 3 ASP B 413 OD2 92.0 82.8 REMARK 620 4 ASP B 530 OD1 93.2 86.9 169.0 REMARK 620 5 HOH B 623 O 168.5 92.8 89.5 87.3 REMARK 620 6 HOH B 624 O 89.3 170.7 101.8 87.9 79.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 413 OD1 REMARK 620 2 HOH B 623 O 98.6 REMARK 620 3 HOH B 625 O 94.5 86.6 REMARK 620 4 HOH B 626 O 168.8 89.2 94.0 REMARK 620 5 HOH B 627 O 86.4 172.7 87.8 86.6 REMARK 620 6 HOH B 628 O 85.9 89.5 176.1 86.1 96.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NPV A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NPV B 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QYL RELATED DB: PDB REMARK 900 RELATED ID: 2QYM RELATED DB: PDB REMARK 900 RELATED ID: 2QYN RELATED DB: PDB DBREF 2QYK A 290 622 UNP Q9H3H2 Q9H3H2_HUMAN 290 622 DBREF 2QYK B 290 622 UNP Q9H3H2 Q9H3H2_HUMAN 290 622 SEQADV 2QYK HIS A 288 UNP Q9H3H2 EXPRESSION TAG SEQADV 2QYK MET A 289 UNP Q9H3H2 EXPRESSION TAG SEQADV 2QYK HIS B 288 UNP Q9H3H2 EXPRESSION TAG SEQADV 2QYK MET B 289 UNP Q9H3H2 EXPRESSION TAG SEQRES 1 A 335 HIS MET ASN ILE PRO ARG PHE GLY VAL LYS THR ASP GLN SEQRES 2 A 335 GLU GLU LEU LEU ALA GLN GLU LEU GLU ASN LEU ASN LYS SEQRES 3 A 335 TRP GLY LEU ASN ILE PHE CYS VAL SER ASP TYR ALA GLY SEQRES 4 A 335 GLY ARG SER LEU THR CYS ILE MET TYR MET ILE PHE GLN SEQRES 5 A 335 GLU ARG ASP LEU LEU LYS LYS PHE ARG ILE PRO VAL ASP SEQRES 6 A 335 THR MET VAL THR TYR MET LEU THR LEU GLU ASP HIS TYR SEQRES 7 A 335 HIS ALA ASP VAL ALA TYR HIS ASN SER LEU HIS ALA ALA SEQRES 8 A 335 ASP VAL LEU GLN SER THR HIS VAL LEU LEU ALA THR PRO SEQRES 9 A 335 ALA LEU ASP ALA VAL PHE THR ASP LEU GLU ILE LEU ALA SEQRES 10 A 335 ALA LEU PHE ALA ALA ALA ILE HIS ASP VAL ASP HIS PRO SEQRES 11 A 335 GLY VAL SER ASN GLN PHE LEU ILE ASN THR ASN SER GLU SEQRES 12 A 335 LEU ALA LEU MET TYR ASN ASP GLU SER VAL LEU GLU ASN SEQRES 13 A 335 HIS HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU ASP SEQRES 14 A 335 ASN CYS ASP ILE PHE GLN ASN LEU SER LYS ARG GLN ARG SEQRES 15 A 335 GLN SER LEU ARG LYS MET VAL ILE ASP MET VAL LEU ALA SEQRES 16 A 335 THR ASP MET SER LYS HIS MET THR LEU LEU ALA ASP LEU SEQRES 17 A 335 LYS THR MET VAL GLU THR LYS LYS VAL THR SER SER GLY SEQRES 18 A 335 VAL LEU LEU LEU ASP ASN TYR SER ASP ARG ILE GLN VAL SEQRES 19 A 335 LEU ARG ASN MET VAL HIS CYS ALA ASP LEU SER ASN PRO SEQRES 20 A 335 THR LYS PRO LEU GLU LEU TYR ARG GLN TRP THR ASP ARG SEQRES 21 A 335 ILE MET ALA GLU PHE PHE GLN GLN GLY ASP ARG GLU ARG SEQRES 22 A 335 GLU ARG GLY MET GLU ILE SER PRO MET CYS ASP LYS HIS SEQRES 23 A 335 THR ALA SER VAL GLU LYS SER GLN VAL GLY PHE ILE ASP SEQRES 24 A 335 TYR ILE VAL HIS PRO LEU TRP GLU THR TRP ALA ASP LEU SEQRES 25 A 335 VAL HIS PRO ASP ALA GLN GLU ILE LEU ASP THR LEU GLU SEQRES 26 A 335 ASP ASN ARG ASP TRP TYR TYR SER ALA ILE SEQRES 1 B 335 HIS MET ASN ILE PRO ARG PHE GLY VAL LYS THR ASP GLN SEQRES 2 B 335 GLU GLU LEU LEU ALA GLN GLU LEU GLU ASN LEU ASN LYS SEQRES 3 B 335 TRP GLY LEU ASN ILE PHE CYS VAL SER ASP TYR ALA GLY SEQRES 4 B 335 GLY ARG SER LEU THR CYS ILE MET TYR MET ILE PHE GLN SEQRES 5 B 335 GLU ARG ASP LEU LEU LYS LYS PHE ARG ILE PRO VAL ASP SEQRES 6 B 335 THR MET VAL THR TYR MET LEU THR LEU GLU ASP HIS TYR SEQRES 7 B 335 HIS ALA ASP VAL ALA TYR HIS ASN SER LEU HIS ALA ALA SEQRES 8 B 335 ASP VAL LEU GLN SER THR HIS VAL LEU LEU ALA THR PRO SEQRES 9 B 335 ALA LEU ASP ALA VAL PHE THR ASP LEU GLU ILE LEU ALA SEQRES 10 B 335 ALA LEU PHE ALA ALA ALA ILE HIS ASP VAL ASP HIS PRO SEQRES 11 B 335 GLY VAL SER ASN GLN PHE LEU ILE ASN THR ASN SER GLU SEQRES 12 B 335 LEU ALA LEU MET TYR ASN ASP GLU SER VAL LEU GLU ASN SEQRES 13 B 335 HIS HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU ASP SEQRES 14 B 335 ASN CYS ASP ILE PHE GLN ASN LEU SER LYS ARG GLN ARG SEQRES 15 B 335 GLN SER LEU ARG LYS MET VAL ILE ASP MET VAL LEU ALA SEQRES 16 B 335 THR ASP MET SER LYS HIS MET THR LEU LEU ALA ASP LEU SEQRES 17 B 335 LYS THR MET VAL GLU THR LYS LYS VAL THR SER SER GLY SEQRES 18 B 335 VAL LEU LEU LEU ASP ASN TYR SER ASP ARG ILE GLN VAL SEQRES 19 B 335 LEU ARG ASN MET VAL HIS CYS ALA ASP LEU SER ASN PRO SEQRES 20 B 335 THR LYS PRO LEU GLU LEU TYR ARG GLN TRP THR ASP ARG SEQRES 21 B 335 ILE MET ALA GLU PHE PHE GLN GLN GLY ASP ARG GLU ARG SEQRES 22 B 335 GLU ARG GLY MET GLU ILE SER PRO MET CYS ASP LYS HIS SEQRES 23 B 335 THR ALA SER VAL GLU LYS SER GLN VAL GLY PHE ILE ASP SEQRES 24 B 335 TYR ILE VAL HIS PRO LEU TRP GLU THR TRP ALA ASP LEU SEQRES 25 B 335 VAL HIS PRO ASP ALA GLN GLU ILE LEU ASP THR LEU GLU SEQRES 26 B 335 ASP ASN ARG ASP TRP TYR TYR SER ALA ILE HET NPV A 3 28 HET ZN A 1 1 HET MG A 2 1 HET NPV B 3 28 HET ZN B 1 1 HET MG B 2 1 HETNAM NPV 4-[8-(3-NITROPHENYL)-1,7-NAPHTHYRIDIN-6-YL]BENZOIC ACID HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 3 NPV 2(C21 H13 N3 O4) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *312(H2 O) HELIX 1 1 GLN A 300 LEU A 308 1 9 HELIX 2 2 GLU A 309 LEU A 311 5 3 HELIX 3 3 ASN A 317 ALA A 325 1 9 HELIX 4 4 ARG A 328 ARG A 341 1 14 HELIX 5 5 ASP A 342 PHE A 347 1 6 HELIX 6 6 PRO A 350 HIS A 364 1 15 HELIX 7 7 ASN A 373 ALA A 389 1 17 HELIX 8 8 THR A 390 ASP A 394 5 5 HELIX 9 9 THR A 398 HIS A 412 1 15 HELIX 10 10 SER A 420 THR A 427 1 8 HELIX 11 11 SER A 429 TYR A 435 1 7 HELIX 12 12 SER A 439 LEU A 452 1 14 HELIX 13 13 LEU A 453 GLU A 455 5 3 HELIX 14 14 SER A 465 ALA A 482 1 18 HELIX 15 15 THR A 483 SER A 486 5 4 HELIX 16 16 LYS A 487 THR A 501 1 15 HELIX 17 17 ASN A 514 LEU A 531 1 18 HELIX 18 18 SER A 532 LYS A 536 5 5 HELIX 19 19 PRO A 537 ARG A 562 1 26 HELIX 20 20 SER A 576 ILE A 588 1 13 HELIX 21 21 ILE A 588 VAL A 600 1 13 HELIX 22 22 ALA A 604 ILE A 622 1 19 HELIX 23 23 GLN B 300 LEU B 308 1 9 HELIX 24 24 GLU B 309 LEU B 311 5 3 HELIX 25 25 ASN B 317 ALA B 325 1 9 HELIX 26 26 ARG B 328 ARG B 341 1 14 HELIX 27 27 ASP B 342 PHE B 347 1 6 HELIX 28 28 PRO B 350 HIS B 364 1 15 HELIX 29 29 ASN B 373 ALA B 389 1 17 HELIX 30 30 THR B 390 ASP B 394 5 5 HELIX 31 31 THR B 398 HIS B 412 1 15 HELIX 32 32 SER B 420 THR B 427 1 8 HELIX 33 33 SER B 429 TYR B 435 1 7 HELIX 34 34 SER B 439 LEU B 452 1 14 HELIX 35 35 LEU B 453 GLU B 455 5 3 HELIX 36 36 SER B 465 ALA B 482 1 18 HELIX 37 37 THR B 483 SER B 486 5 4 HELIX 38 38 LYS B 487 THR B 501 1 15 HELIX 39 39 ASN B 514 LEU B 531 1 18 HELIX 40 40 SER B 532 LYS B 536 5 5 HELIX 41 41 PRO B 537 GLY B 563 1 27 HELIX 42 42 SER B 576 ILE B 588 1 13 HELIX 43 43 ILE B 588 HIS B 601 1 14 HELIX 44 44 ALA B 604 ALA B 621 1 18 LINK ZN ZN A 1 NE2 HIS A 376 1555 1555 2.10 LINK ZN ZN A 1 NE2 HIS A 412 1555 1555 2.11 LINK ZN ZN A 1 OD2 ASP A 413 1555 1555 2.05 LINK ZN ZN A 1 OD1 ASP A 530 1555 1555 2.06 LINK ZN ZN A 1 O HOH A 623 1555 1555 2.31 LINK MG MG A 2 OD1 ASP A 413 1555 1555 2.09 LINK MG MG A 2 O HOH A 623 1555 1555 2.23 LINK MG MG A 2 O HOH A 625 1555 1555 2.20 LINK MG MG A 2 O HOH A 626 1555 1555 2.36 LINK MG MG A 2 O HOH A 627 1555 1555 2.30 LINK MG MG A 2 O HOH A 628 1555 1555 2.28 LINK ZN ZN B 1 NE2 HIS B 376 1555 1555 2.11 LINK ZN ZN B 1 NE2 HIS B 412 1555 1555 2.10 LINK ZN ZN B 1 OD2 ASP B 413 1555 1555 2.06 LINK ZN ZN B 1 OD1 ASP B 530 1555 1555 2.07 LINK ZN ZN B 1 O HOH B 623 1555 1555 2.33 LINK ZN ZN B 1 O HOH B 624 1555 1555 2.40 LINK MG MG B 2 OD1 ASP B 413 1555 1555 2.09 LINK MG MG B 2 O HOH B 623 1555 1555 2.24 LINK MG MG B 2 O HOH B 625 1555 1555 2.30 LINK MG MG B 2 O HOH B 626 1555 1555 2.30 LINK MG MG B 2 O HOH B 627 1555 1555 2.32 LINK MG MG B 2 O HOH B 628 1555 1555 2.28 CISPEP 1 HIS A 601 PRO A 602 0 0.09 CISPEP 2 HIS B 601 PRO B 602 0 0.08 SITE 1 AC1 6 HIS A 376 HIS A 412 ASP A 413 ASP A 530 SITE 2 AC1 6 HOH A 623 HOH A 624 SITE 1 AC2 6 ASP A 413 HOH A 623 HOH A 625 HOH A 626 SITE 2 AC2 6 HOH A 627 HOH A 628 SITE 1 AC3 6 HIS B 376 HIS B 412 ASP B 413 ASP B 530 SITE 2 AC3 6 HOH B 623 HOH B 624 SITE 1 AC4 6 ASP B 413 HOH B 623 HOH B 625 HOH B 626 SITE 2 AC4 6 HOH B 627 HOH B 628 SITE 1 AC5 13 TYR A 371 HIS A 372 ASN A 533 ILE A 548 SITE 2 AC5 13 PHE A 552 MET A 569 SER A 580 GLN A 581 SITE 3 AC5 13 PHE A 584 HOH A 625 HOH A 629 HOH A 733 SITE 4 AC5 13 HOH A 755 SITE 1 AC6 12 TYR B 371 ASN B 533 PHE B 552 MET B 569 SITE 2 AC6 12 SER B 580 GLN B 581 PHE B 584 HOH B 625 SITE 3 AC6 12 HOH B 626 HOH B 717 HOH B 738 HOH B 740 CRYST1 105.443 105.443 166.103 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009484 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006020 0.00000