data_2QYT # _entry.id 2QYT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QYT RCSB RCSB044215 WWPDB D_1000044215 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC81190 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2QYT _pdbx_database_status.recvd_initial_deposition_date 2007-08-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Wu, R.' 2 'Moy, S.' 3 'Joachimiak, A.' 4 'Midwest Center for Structural Genomics (MCSG)' 5 # _citation.id primary _citation.title 'The crystal structure of 2-dehydropantoate 2-reductase from Porphyromonas gingivalis W83.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Wu, R.' 2 primary 'Moy, S.' 3 primary 'Joachimiak, A.' 4 # _cell.entry_id 2QYT _cell.length_a 79.577 _cell.length_b 79.577 _cell.length_c 98.260 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QYT _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2-dehydropantoate 2-reductase' 35671.930 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 4 water nat water 18.015 147 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)NQQPIKIAVFGLGGVGGYYGA(MSE)LALRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPT CVTDNPAEVGTVDYILFCTKDYD(MSE)ERGVAEIRP(MSE)IGQNTKILPLLNGADIAER(MSE)RTYLPDTVVWKGCV YISARKSAPGLITLEADRELFYFGSGLPEQTDDEVRLAELLTAAGIRAYNPTDIDWYI(MSE)KKF(MSE)(MSE)ISVT ATATAYFDKPIGSILTEHEPELLSLLEEVAELFRAKYGQVPDDVVQQLLDKQRK(MSE)PPESTSS(MSE)HSDFLQGGS TEVETLTGYVVREAEALRVDLP(MSE)YKR(MSE)YRELVSRTAN ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAE VGTVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADREL FYFGSGLPEQTDDEVRLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAEL FRAKYGQVPDDVVQQLLDKQRKMPPESTSSMHSDFLQGGSTEVETLTGYVVREAEALRVDLPMYKRMYRELVSRTAN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC81190 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 ASN n 1 6 GLN n 1 7 GLN n 1 8 PRO n 1 9 ILE n 1 10 LYS n 1 11 ILE n 1 12 ALA n 1 13 VAL n 1 14 PHE n 1 15 GLY n 1 16 LEU n 1 17 GLY n 1 18 GLY n 1 19 VAL n 1 20 GLY n 1 21 GLY n 1 22 TYR n 1 23 TYR n 1 24 GLY n 1 25 ALA n 1 26 MSE n 1 27 LEU n 1 28 ALA n 1 29 LEU n 1 30 ARG n 1 31 ALA n 1 32 ALA n 1 33 ALA n 1 34 THR n 1 35 ASP n 1 36 GLY n 1 37 LEU n 1 38 LEU n 1 39 GLU n 1 40 VAL n 1 41 SER n 1 42 TRP n 1 43 ILE n 1 44 ALA n 1 45 ARG n 1 46 GLY n 1 47 ALA n 1 48 HIS n 1 49 LEU n 1 50 GLU n 1 51 ALA n 1 52 ILE n 1 53 ARG n 1 54 ALA n 1 55 ALA n 1 56 GLY n 1 57 GLY n 1 58 LEU n 1 59 ARG n 1 60 VAL n 1 61 VAL n 1 62 THR n 1 63 PRO n 1 64 SER n 1 65 ARG n 1 66 ASP n 1 67 PHE n 1 68 LEU n 1 69 ALA n 1 70 ARG n 1 71 PRO n 1 72 THR n 1 73 CYS n 1 74 VAL n 1 75 THR n 1 76 ASP n 1 77 ASN n 1 78 PRO n 1 79 ALA n 1 80 GLU n 1 81 VAL n 1 82 GLY n 1 83 THR n 1 84 VAL n 1 85 ASP n 1 86 TYR n 1 87 ILE n 1 88 LEU n 1 89 PHE n 1 90 CYS n 1 91 THR n 1 92 LYS n 1 93 ASP n 1 94 TYR n 1 95 ASP n 1 96 MSE n 1 97 GLU n 1 98 ARG n 1 99 GLY n 1 100 VAL n 1 101 ALA n 1 102 GLU n 1 103 ILE n 1 104 ARG n 1 105 PRO n 1 106 MSE n 1 107 ILE n 1 108 GLY n 1 109 GLN n 1 110 ASN n 1 111 THR n 1 112 LYS n 1 113 ILE n 1 114 LEU n 1 115 PRO n 1 116 LEU n 1 117 LEU n 1 118 ASN n 1 119 GLY n 1 120 ALA n 1 121 ASP n 1 122 ILE n 1 123 ALA n 1 124 GLU n 1 125 ARG n 1 126 MSE n 1 127 ARG n 1 128 THR n 1 129 TYR n 1 130 LEU n 1 131 PRO n 1 132 ASP n 1 133 THR n 1 134 VAL n 1 135 VAL n 1 136 TRP n 1 137 LYS n 1 138 GLY n 1 139 CYS n 1 140 VAL n 1 141 TYR n 1 142 ILE n 1 143 SER n 1 144 ALA n 1 145 ARG n 1 146 LYS n 1 147 SER n 1 148 ALA n 1 149 PRO n 1 150 GLY n 1 151 LEU n 1 152 ILE n 1 153 THR n 1 154 LEU n 1 155 GLU n 1 156 ALA n 1 157 ASP n 1 158 ARG n 1 159 GLU n 1 160 LEU n 1 161 PHE n 1 162 TYR n 1 163 PHE n 1 164 GLY n 1 165 SER n 1 166 GLY n 1 167 LEU n 1 168 PRO n 1 169 GLU n 1 170 GLN n 1 171 THR n 1 172 ASP n 1 173 ASP n 1 174 GLU n 1 175 VAL n 1 176 ARG n 1 177 LEU n 1 178 ALA n 1 179 GLU n 1 180 LEU n 1 181 LEU n 1 182 THR n 1 183 ALA n 1 184 ALA n 1 185 GLY n 1 186 ILE n 1 187 ARG n 1 188 ALA n 1 189 TYR n 1 190 ASN n 1 191 PRO n 1 192 THR n 1 193 ASP n 1 194 ILE n 1 195 ASP n 1 196 TRP n 1 197 TYR n 1 198 ILE n 1 199 MSE n 1 200 LYS n 1 201 LYS n 1 202 PHE n 1 203 MSE n 1 204 MSE n 1 205 ILE n 1 206 SER n 1 207 VAL n 1 208 THR n 1 209 ALA n 1 210 THR n 1 211 ALA n 1 212 THR n 1 213 ALA n 1 214 TYR n 1 215 PHE n 1 216 ASP n 1 217 LYS n 1 218 PRO n 1 219 ILE n 1 220 GLY n 1 221 SER n 1 222 ILE n 1 223 LEU n 1 224 THR n 1 225 GLU n 1 226 HIS n 1 227 GLU n 1 228 PRO n 1 229 GLU n 1 230 LEU n 1 231 LEU n 1 232 SER n 1 233 LEU n 1 234 LEU n 1 235 GLU n 1 236 GLU n 1 237 VAL n 1 238 ALA n 1 239 GLU n 1 240 LEU n 1 241 PHE n 1 242 ARG n 1 243 ALA n 1 244 LYS n 1 245 TYR n 1 246 GLY n 1 247 GLN n 1 248 VAL n 1 249 PRO n 1 250 ASP n 1 251 ASP n 1 252 VAL n 1 253 VAL n 1 254 GLN n 1 255 GLN n 1 256 LEU n 1 257 LEU n 1 258 ASP n 1 259 LYS n 1 260 GLN n 1 261 ARG n 1 262 LYS n 1 263 MSE n 1 264 PRO n 1 265 PRO n 1 266 GLU n 1 267 SER n 1 268 THR n 1 269 SER n 1 270 SER n 1 271 MSE n 1 272 HIS n 1 273 SER n 1 274 ASP n 1 275 PHE n 1 276 LEU n 1 277 GLN n 1 278 GLY n 1 279 GLY n 1 280 SER n 1 281 THR n 1 282 GLU n 1 283 VAL n 1 284 GLU n 1 285 THR n 1 286 LEU n 1 287 THR n 1 288 GLY n 1 289 TYR n 1 290 VAL n 1 291 VAL n 1 292 ARG n 1 293 GLU n 1 294 ALA n 1 295 GLU n 1 296 ALA n 1 297 LEU n 1 298 ARG n 1 299 VAL n 1 300 ASP n 1 301 LEU n 1 302 PRO n 1 303 MSE n 1 304 TYR n 1 305 LYS n 1 306 ARG n 1 307 MSE n 1 308 TYR n 1 309 ARG n 1 310 GLU n 1 311 LEU n 1 312 VAL n 1 313 SER n 1 314 ARG n 1 315 THR n 1 316 ALA n 1 317 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Porphyromonas _entity_src_gen.pdbx_gene_src_gene 'panE, PG_2205' _entity_src_gen.gene_src_species 'Porphyromonas gingivalis' _entity_src_gen.gene_src_strain W83 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Porphyromonas gingivalis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 242619 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc BAA-308 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7MT04_PORGI _struct_ref.pdbx_db_accession Q7MT04 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGT VDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELFYF GSGLPEQTDDEVRLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAELFRA KYGQVPDDVVQQLLDKQRKMPPESTSSMHSDFLQGGSTEVETLTGYVVREAEALRVDLPMYKRMYRELVSRTAN ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QYT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 317 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q7MT04 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 314 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 314 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QYT SER A 1 ? UNP Q7MT04 ? ? 'EXPRESSION TAG' -2 1 1 2QYT ASN A 2 ? UNP Q7MT04 ? ? 'EXPRESSION TAG' -1 2 1 2QYT ALA A 3 ? UNP Q7MT04 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QYT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 43.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '0.2M Ammonium sulfate, 0.1M MES, 30% PEG MME5000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-03-02 _diffrn_detector.details Mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97925 1.0 2 0.97938 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.97925, 0.97938' # _reflns.entry_id 2QYT _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 62.0 _reflns.d_resolution_high 2.15 _reflns.number_obs 16966 _reflns.number_all 16966 _reflns.percent_possible_obs 95.3 _reflns.pdbx_Rmerge_I_obs 0.132 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.5 _reflns.B_iso_Wilson_estimate 24.83 _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.20 _reflns_shell.percent_possible_all 67.4 _reflns_shell.Rmerge_I_obs 0.475 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy 2.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QYT _refine.ls_number_reflns_obs 16055 _refine.ls_number_reflns_all 16055 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.81 _refine.ls_d_res_high 2.15 _refine.ls_percent_reflns_obs 95.33 _refine.ls_R_factor_obs 0.19839 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19493 _refine.ls_R_factor_R_free 0.26479 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 866 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.899 _refine.B_iso_mean 21.634 _refine.aniso_B[1][1] -0.94 _refine.aniso_B[2][2] -0.94 _refine.aniso_B[3][3] 1.87 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.274 _refine.pdbx_overall_ESU_R_Free 0.231 _refine.overall_SU_ML 0.152 _refine.overall_SU_B 11.355 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2241 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 147 _refine_hist.number_atoms_total 2433 _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 41.81 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.022 ? 2357 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.748 2.000 ? 3193 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.688 5.000 ? 295 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.654 22.700 ? 100 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 19.520 15.000 ? 409 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.216 15.000 ? 23 'X-RAY DIFFRACTION' ? r_chiral_restr 0.117 0.200 ? 360 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1741 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.232 0.200 ? 1176 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.309 0.200 ? 1598 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.175 0.200 ? 137 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.257 0.200 ? 64 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.165 0.200 ? 16 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.966 1.500 ? 1489 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.486 2.000 ? 2324 'X-RAY DIFFRACTION' ? r_scbond_it 2.196 3.000 ? 991 'X-RAY DIFFRACTION' ? r_scangle_it 3.288 4.500 ? 864 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.150 _refine_ls_shell.d_res_low 2.206 _refine_ls_shell.number_reflns_R_work 823 _refine_ls_shell.R_factor_R_work 0.213 _refine_ls_shell.percent_reflns_obs 68.29 _refine_ls_shell.R_factor_R_free 0.292 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 45 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QYT _struct.title 'Crystal structure of 2-dehydropantoate 2-reductase from Porphyromonas gingivalis W83' _struct.pdbx_descriptor '2-dehydropantoate 2-reductase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QYT _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text ;APC81190, 2-dehydropantoate 2-reductase, Porphyromonas gingivalis W83, structural genomics, PSI-2, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, OXIDOREDUCTASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? # _struct_biol.id 1 _struct_biol.details 'Experimentally unknown. From molecular packing in crystal, it is likely a monomer.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 17 ? THR A 34 ? GLY A 14 THR A 31 1 ? 18 HELX_P HELX_P2 2 ARG A 45 ? GLY A 56 ? ARG A 42 GLY A 53 1 ? 12 HELX_P HELX_P3 3 ASN A 77 ? GLY A 82 ? ASN A 74 GLY A 79 1 ? 6 HELX_P HELX_P4 4 ASP A 95 ? ARG A 104 ? ASP A 92 ARG A 101 1 ? 10 HELX_P HELX_P5 5 ASP A 121 ? ARG A 127 ? ASP A 118 ARG A 124 1 ? 7 HELX_P HELX_P6 6 THR A 171 ? ALA A 184 ? THR A 168 ALA A 181 1 ? 14 HELX_P HELX_P7 7 ASP A 193 ? ASP A 216 ? ASP A 190 ASP A 213 1 ? 24 HELX_P HELX_P8 8 PRO A 218 ? HIS A 226 ? PRO A 215 HIS A 223 1 ? 9 HELX_P HELX_P9 9 HIS A 226 ? TYR A 245 ? HIS A 223 TYR A 242 1 ? 20 HELX_P HELX_P10 10 ASP A 251 ? MSE A 263 ? ASP A 248 MSE A 260 1 ? 13 HELX_P HELX_P11 11 THR A 287 ? LEU A 297 ? THR A 284 LEU A 294 1 ? 11 HELX_P HELX_P12 12 LEU A 301 ? GLU A 310 ? LEU A 298 GLU A 307 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 25 C ? ? ? 1_555 A MSE 26 N ? ? A ALA 22 A MSE 23 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 26 C ? ? ? 1_555 A LEU 27 N ? ? A MSE 23 A LEU 24 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A ASP 95 C ? ? ? 1_555 A MSE 96 N ? ? A ASP 92 A MSE 93 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A MSE 96 C ? ? ? 1_555 A GLU 97 N ? ? A MSE 93 A GLU 94 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? A PRO 105 C ? ? ? 1_555 A MSE 106 N ? ? A PRO 102 A MSE 103 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 106 C ? ? ? 1_555 A ILE 107 N ? ? A MSE 103 A ILE 104 1_555 ? ? ? ? ? ? ? 1.325 ? covale7 covale ? ? A ARG 125 C ? ? ? 1_555 A MSE 126 N ? ? A ARG 122 A MSE 123 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale ? ? A MSE 126 C ? ? ? 1_555 A ARG 127 N ? ? A MSE 123 A ARG 124 1_555 ? ? ? ? ? ? ? 1.329 ? covale9 covale ? ? A ILE 198 C ? ? ? 1_555 A MSE 199 N ? ? A ILE 195 A MSE 196 1_555 ? ? ? ? ? ? ? 1.334 ? covale10 covale ? ? A MSE 199 C ? ? ? 1_555 A LYS 200 N ? ? A MSE 196 A LYS 197 1_555 ? ? ? ? ? ? ? 1.333 ? covale11 covale ? ? A PHE 202 C ? ? ? 1_555 A MSE 203 N ? ? A PHE 199 A MSE 200 1_555 ? ? ? ? ? ? ? 1.326 ? covale12 covale ? ? A MSE 203 C ? ? ? 1_555 A MSE 204 N ? ? A MSE 200 A MSE 201 1_555 ? ? ? ? ? ? ? 1.335 ? covale13 covale ? ? A MSE 204 C ? ? ? 1_555 A ILE 205 N ? ? A MSE 201 A ILE 202 1_555 ? ? ? ? ? ? ? 1.327 ? covale14 covale ? ? A LYS 262 C ? ? ? 1_555 A MSE 263 N ? ? A LYS 259 A MSE 260 1_555 ? ? ? ? ? ? ? 1.346 ? covale15 covale ? ? A PRO 302 C ? ? ? 1_555 A MSE 303 N ? ? A PRO 299 A MSE 300 1_555 ? ? ? ? ? ? ? 1.330 ? covale16 covale ? ? A MSE 303 C ? ? ? 1_555 A TYR 304 N ? ? A MSE 300 A TYR 301 1_555 ? ? ? ? ? ? ? 1.336 ? covale17 covale ? ? A ARG 306 C ? ? ? 1_555 A MSE 307 N ? ? A ARG 303 A MSE 304 1_555 ? ? ? ? ? ? ? 1.331 ? covale18 covale ? ? A MSE 307 C ? ? ? 1_555 A TYR 308 N ? ? A MSE 304 A TYR 305 1_555 ? ? ? ? ? ? ? 1.334 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 73 ? THR A 75 ? CYS A 70 THR A 72 A 2 LEU A 38 ? ILE A 43 ? LEU A 35 ILE A 40 A 3 ILE A 9 ? PHE A 14 ? ILE A 6 PHE A 11 A 4 VAL A 84 ? PHE A 89 ? VAL A 81 PHE A 86 A 5 ILE A 107 ? PRO A 115 ? ILE A 104 PRO A 112 B 1 ASP A 66 ? ALA A 69 ? ASP A 63 ALA A 66 B 2 LEU A 58 ? VAL A 61 ? LEU A 55 VAL A 58 B 3 LEU A 151 ? LEU A 154 ? LEU A 148 LEU A 151 B 4 ALA A 144 ? ALA A 148 ? ALA A 141 ALA A 145 C 1 LYS A 137 ? TYR A 141 ? LYS A 134 TYR A 138 C 2 LEU A 160 ? GLY A 164 ? LEU A 157 GLY A 161 C 3 ALA A 188 ? TYR A 189 ? ALA A 185 TYR A 186 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 75 ? O THR A 72 N TRP A 42 ? N TRP A 39 A 2 3 O ILE A 43 ? O ILE A 40 N VAL A 13 ? N VAL A 10 A 3 4 N ALA A 12 ? N ALA A 9 O LEU A 88 ? O LEU A 85 A 4 5 N ILE A 87 ? N ILE A 84 O LEU A 114 ? O LEU A 111 B 1 2 O ALA A 69 ? O ALA A 66 N LEU A 58 ? N LEU A 55 B 2 3 N ARG A 59 ? N ARG A 56 O ILE A 152 ? O ILE A 149 B 3 4 O THR A 153 ? O THR A 150 N ARG A 145 ? N ARG A 142 C 1 2 N LYS A 137 ? N LYS A 134 O GLY A 164 ? O GLY A 161 C 2 3 N PHE A 161 ? N PHE A 158 O TYR A 189 ? O TYR A 186 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE SO4 A 315' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 316' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 317' AC4 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE SO4 A 318' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 319' AC6 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE EDO A 320' AC7 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 321' AC8 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 322' AC9 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 323' BC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 324' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 GLY A 18 ? GLY A 15 . ? 1_555 ? 2 AC1 9 LYS A 92 ? LYS A 89 . ? 1_555 ? 3 AC1 9 ALA A 144 ? ALA A 141 . ? 1_555 ? 4 AC1 9 ARG A 145 ? ARG A 142 . ? 1_555 ? 5 AC1 9 LYS A 146 ? LYS A 143 . ? 1_555 ? 6 AC1 9 SO4 E . ? SO4 A 318 . ? 1_555 ? 7 AC1 9 EDO G . ? EDO A 320 . ? 1_555 ? 8 AC1 9 HOH L . ? HOH A 443 . ? 1_555 ? 9 AC1 9 HOH L . ? HOH A 444 . ? 1_555 ? 10 AC2 8 LEU A 16 ? LEU A 13 . ? 1_555 ? 11 AC2 8 ALA A 44 ? ALA A 41 . ? 1_555 ? 12 AC2 8 ARG A 45 ? ARG A 42 . ? 1_555 ? 13 AC2 8 HIS A 48 ? HIS A 45 . ? 1_555 ? 14 AC2 8 LYS A 146 ? LYS A 143 . ? 1_555 ? 15 AC2 8 SO4 E . ? SO4 A 318 . ? 1_555 ? 16 AC2 8 HOH L . ? HOH A 365 . ? 1_555 ? 17 AC2 8 HOH L . ? HOH A 393 . ? 1_555 ? 18 AC3 6 ASP A 35 ? ASP A 32 . ? 6_455 ? 19 AC3 6 GLU A 284 ? GLU A 281 . ? 1_555 ? 20 AC3 6 THR A 285 ? THR A 282 . ? 1_555 ? 21 AC3 6 GLY A 288 ? GLY A 285 . ? 1_555 ? 22 AC3 6 ARG A 292 ? ARG A 289 . ? 1_555 ? 23 AC3 6 TYR A 308 ? TYR A 305 . ? 1_555 ? 24 AC4 10 GLY A 15 ? GLY A 12 . ? 1_555 ? 25 AC4 10 LEU A 16 ? LEU A 13 . ? 1_555 ? 26 AC4 10 GLY A 17 ? GLY A 14 . ? 1_555 ? 27 AC4 10 CYS A 90 ? CYS A 87 . ? 1_555 ? 28 AC4 10 THR A 91 ? THR A 88 . ? 1_555 ? 29 AC4 10 ASP A 93 ? ASP A 90 . ? 1_555 ? 30 AC4 10 SO4 B . ? SO4 A 315 . ? 1_555 ? 31 AC4 10 SO4 C . ? SO4 A 316 . ? 1_555 ? 32 AC4 10 EDO G . ? EDO A 320 . ? 1_555 ? 33 AC4 10 HOH L . ? HOH A 443 . ? 1_555 ? 34 AC5 6 TYR A 189 ? TYR A 186 . ? 8_665 ? 35 AC5 6 TYR A 189 ? TYR A 186 . ? 1_555 ? 36 AC5 6 ASN A 190 ? ASN A 187 . ? 1_555 ? 37 AC5 6 EDO K . ? EDO A 324 . ? 8_665 ? 38 AC5 6 EDO K . ? EDO A 324 . ? 1_555 ? 39 AC5 6 HOH L . ? HOH A 459 . ? 1_555 ? 40 AC6 8 GLY A 15 ? GLY A 12 . ? 1_555 ? 41 AC6 8 GLY A 17 ? GLY A 14 . ? 1_555 ? 42 AC6 8 GLY A 18 ? GLY A 15 . ? 1_555 ? 43 AC6 8 VAL A 19 ? VAL A 16 . ? 1_555 ? 44 AC6 8 GLY A 20 ? GLY A 17 . ? 1_555 ? 45 AC6 8 CYS A 90 ? CYS A 87 . ? 1_555 ? 46 AC6 8 SO4 B . ? SO4 A 315 . ? 1_555 ? 47 AC6 8 SO4 E . ? SO4 A 318 . ? 1_555 ? 48 AC7 4 THR A 83 ? THR A 80 . ? 1_555 ? 49 AC7 4 GLY A 108 ? GLY A 105 . ? 1_555 ? 50 AC7 4 GLN A 109 ? GLN A 106 . ? 1_555 ? 51 AC7 4 THR A 133 ? THR A 130 . ? 7_556 ? 52 AC8 3 ALA A 296 ? ALA A 293 . ? 1_555 ? 53 AC8 3 ARG A 298 ? ARG A 295 . ? 1_555 ? 54 AC8 3 HOH L . ? HOH A 440 . ? 6_455 ? 55 AC9 6 TYR A 22 ? TYR A 19 . ? 1_555 ? 56 AC9 6 ARG A 65 ? ARG A 62 . ? 1_555 ? 57 AC9 6 ASP A 157 ? ASP A 154 . ? 1_555 ? 58 AC9 6 GLU A 159 ? GLU A 156 . ? 1_555 ? 59 AC9 6 ARG A 187 ? ARG A 184 . ? 1_555 ? 60 AC9 6 HOH L . ? HOH A 471 . ? 1_555 ? 61 BC1 6 TYR A 189 ? TYR A 186 . ? 1_555 ? 62 BC1 6 ASN A 190 ? ASN A 187 . ? 1_555 ? 63 BC1 6 PRO A 191 ? PRO A 188 . ? 1_555 ? 64 BC1 6 TYR A 197 ? TYR A 194 . ? 1_555 ? 65 BC1 6 SO4 F . ? SO4 A 319 . ? 8_665 ? 66 BC1 6 SO4 F . ? SO4 A 319 . ? 1_555 ? # _database_PDB_matrix.entry_id 2QYT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2QYT _atom_sites.fract_transf_matrix[1][1] 0.012566 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012566 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010177 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 ? ? ? A . n A 1 4 MSE 4 1 ? ? ? A . n A 1 5 ASN 5 2 ? ? ? A . n A 1 6 GLN 6 3 ? ? ? A . n A 1 7 GLN 7 4 4 GLN GLN A . n A 1 8 PRO 8 5 5 PRO PRO A . n A 1 9 ILE 9 6 6 ILE ILE A . n A 1 10 LYS 10 7 7 LYS LYS A . n A 1 11 ILE 11 8 8 ILE ILE A . n A 1 12 ALA 12 9 9 ALA ALA A . n A 1 13 VAL 13 10 10 VAL VAL A . n A 1 14 PHE 14 11 11 PHE PHE A . n A 1 15 GLY 15 12 12 GLY GLY A . n A 1 16 LEU 16 13 13 LEU LEU A . n A 1 17 GLY 17 14 14 GLY GLY A . n A 1 18 GLY 18 15 15 GLY GLY A . n A 1 19 VAL 19 16 16 VAL VAL A . n A 1 20 GLY 20 17 17 GLY GLY A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 TYR 22 19 19 TYR TYR A . n A 1 23 TYR 23 20 20 TYR TYR A . n A 1 24 GLY 24 21 21 GLY GLY A . n A 1 25 ALA 25 22 22 ALA ALA A . n A 1 26 MSE 26 23 23 MSE MSE A . n A 1 27 LEU 27 24 24 LEU LEU A . n A 1 28 ALA 28 25 25 ALA ALA A . n A 1 29 LEU 29 26 26 LEU LEU A . n A 1 30 ARG 30 27 27 ARG ARG A . n A 1 31 ALA 31 28 28 ALA ALA A . n A 1 32 ALA 32 29 29 ALA ALA A . n A 1 33 ALA 33 30 30 ALA ALA A . n A 1 34 THR 34 31 31 THR THR A . n A 1 35 ASP 35 32 32 ASP ASP A . n A 1 36 GLY 36 33 33 GLY GLY A . n A 1 37 LEU 37 34 34 LEU LEU A . n A 1 38 LEU 38 35 35 LEU LEU A . n A 1 39 GLU 39 36 36 GLU GLU A . n A 1 40 VAL 40 37 37 VAL VAL A . n A 1 41 SER 41 38 38 SER SER A . n A 1 42 TRP 42 39 39 TRP TRP A . n A 1 43 ILE 43 40 40 ILE ILE A . n A 1 44 ALA 44 41 41 ALA ALA A . n A 1 45 ARG 45 42 42 ARG ARG A . n A 1 46 GLY 46 43 43 GLY GLY A . n A 1 47 ALA 47 44 44 ALA ALA A . n A 1 48 HIS 48 45 45 HIS HIS A . n A 1 49 LEU 49 46 46 LEU LEU A . n A 1 50 GLU 50 47 47 GLU GLU A . n A 1 51 ALA 51 48 48 ALA ALA A . n A 1 52 ILE 52 49 49 ILE ILE A . n A 1 53 ARG 53 50 50 ARG ARG A . n A 1 54 ALA 54 51 51 ALA ALA A . n A 1 55 ALA 55 52 52 ALA ALA A . n A 1 56 GLY 56 53 53 GLY GLY A . n A 1 57 GLY 57 54 54 GLY GLY A . n A 1 58 LEU 58 55 55 LEU LEU A . n A 1 59 ARG 59 56 56 ARG ARG A . n A 1 60 VAL 60 57 57 VAL VAL A . n A 1 61 VAL 61 58 58 VAL VAL A . n A 1 62 THR 62 59 59 THR THR A . n A 1 63 PRO 63 60 60 PRO PRO A . n A 1 64 SER 64 61 61 SER SER A . n A 1 65 ARG 65 62 62 ARG ARG A . n A 1 66 ASP 66 63 63 ASP ASP A . n A 1 67 PHE 67 64 64 PHE PHE A . n A 1 68 LEU 68 65 65 LEU LEU A . n A 1 69 ALA 69 66 66 ALA ALA A . n A 1 70 ARG 70 67 67 ARG ARG A . n A 1 71 PRO 71 68 68 PRO PRO A . n A 1 72 THR 72 69 69 THR THR A . n A 1 73 CYS 73 70 70 CYS CYS A . n A 1 74 VAL 74 71 71 VAL VAL A . n A 1 75 THR 75 72 72 THR THR A . n A 1 76 ASP 76 73 73 ASP ASP A . n A 1 77 ASN 77 74 74 ASN ASN A . n A 1 78 PRO 78 75 75 PRO PRO A . n A 1 79 ALA 79 76 76 ALA ALA A . n A 1 80 GLU 80 77 77 GLU GLU A . n A 1 81 VAL 81 78 78 VAL VAL A . n A 1 82 GLY 82 79 79 GLY GLY A . n A 1 83 THR 83 80 80 THR THR A . n A 1 84 VAL 84 81 81 VAL VAL A . n A 1 85 ASP 85 82 82 ASP ASP A . n A 1 86 TYR 86 83 83 TYR TYR A . n A 1 87 ILE 87 84 84 ILE ILE A . n A 1 88 LEU 88 85 85 LEU LEU A . n A 1 89 PHE 89 86 86 PHE PHE A . n A 1 90 CYS 90 87 87 CYS CYS A . n A 1 91 THR 91 88 88 THR THR A . n A 1 92 LYS 92 89 89 LYS LYS A . n A 1 93 ASP 93 90 90 ASP ASP A . n A 1 94 TYR 94 91 91 TYR TYR A . n A 1 95 ASP 95 92 92 ASP ASP A . n A 1 96 MSE 96 93 93 MSE MSE A . n A 1 97 GLU 97 94 94 GLU GLU A . n A 1 98 ARG 98 95 95 ARG ARG A . n A 1 99 GLY 99 96 96 GLY GLY A . n A 1 100 VAL 100 97 97 VAL VAL A . n A 1 101 ALA 101 98 98 ALA ALA A . n A 1 102 GLU 102 99 99 GLU GLU A . n A 1 103 ILE 103 100 100 ILE ILE A . n A 1 104 ARG 104 101 101 ARG ARG A . n A 1 105 PRO 105 102 102 PRO PRO A . n A 1 106 MSE 106 103 103 MSE MSE A . n A 1 107 ILE 107 104 104 ILE ILE A . n A 1 108 GLY 108 105 105 GLY GLY A . n A 1 109 GLN 109 106 106 GLN GLN A . n A 1 110 ASN 110 107 107 ASN ASN A . n A 1 111 THR 111 108 108 THR THR A . n A 1 112 LYS 112 109 109 LYS LYS A . n A 1 113 ILE 113 110 110 ILE ILE A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 PRO 115 112 112 PRO PRO A . n A 1 116 LEU 116 113 113 LEU LEU A . n A 1 117 LEU 117 114 114 LEU LEU A . n A 1 118 ASN 118 115 115 ASN ASN A . n A 1 119 GLY 119 116 116 GLY GLY A . n A 1 120 ALA 120 117 117 ALA ALA A . n A 1 121 ASP 121 118 118 ASP ASP A . n A 1 122 ILE 122 119 119 ILE ILE A . n A 1 123 ALA 123 120 120 ALA ALA A . n A 1 124 GLU 124 121 121 GLU GLU A . n A 1 125 ARG 125 122 122 ARG ARG A . n A 1 126 MSE 126 123 123 MSE MSE A . n A 1 127 ARG 127 124 124 ARG ARG A . n A 1 128 THR 128 125 125 THR THR A . n A 1 129 TYR 129 126 126 TYR TYR A . n A 1 130 LEU 130 127 127 LEU LEU A . n A 1 131 PRO 131 128 128 PRO PRO A . n A 1 132 ASP 132 129 129 ASP ASP A . n A 1 133 THR 133 130 130 THR THR A . n A 1 134 VAL 134 131 131 VAL VAL A . n A 1 135 VAL 135 132 132 VAL VAL A . n A 1 136 TRP 136 133 133 TRP TRP A . n A 1 137 LYS 137 134 134 LYS LYS A . n A 1 138 GLY 138 135 135 GLY GLY A . n A 1 139 CYS 139 136 136 CYS CYS A . n A 1 140 VAL 140 137 137 VAL VAL A . n A 1 141 TYR 141 138 138 TYR TYR A . n A 1 142 ILE 142 139 139 ILE ILE A . n A 1 143 SER 143 140 140 SER SER A . n A 1 144 ALA 144 141 141 ALA ALA A . n A 1 145 ARG 145 142 142 ARG ARG A . n A 1 146 LYS 146 143 143 LYS LYS A . n A 1 147 SER 147 144 144 SER SER A . n A 1 148 ALA 148 145 145 ALA ALA A . n A 1 149 PRO 149 146 146 PRO PRO A . n A 1 150 GLY 150 147 147 GLY GLY A . n A 1 151 LEU 151 148 148 LEU LEU A . n A 1 152 ILE 152 149 149 ILE ILE A . n A 1 153 THR 153 150 150 THR THR A . n A 1 154 LEU 154 151 151 LEU LEU A . n A 1 155 GLU 155 152 152 GLU GLU A . n A 1 156 ALA 156 153 153 ALA ALA A . n A 1 157 ASP 157 154 154 ASP ASP A . n A 1 158 ARG 158 155 155 ARG ARG A . n A 1 159 GLU 159 156 156 GLU GLU A . n A 1 160 LEU 160 157 157 LEU LEU A . n A 1 161 PHE 161 158 158 PHE PHE A . n A 1 162 TYR 162 159 159 TYR TYR A . n A 1 163 PHE 163 160 160 PHE PHE A . n A 1 164 GLY 164 161 161 GLY GLY A . n A 1 165 SER 165 162 162 SER SER A . n A 1 166 GLY 166 163 163 GLY GLY A . n A 1 167 LEU 167 164 164 LEU LEU A . n A 1 168 PRO 168 165 165 PRO PRO A . n A 1 169 GLU 169 166 166 GLU GLU A . n A 1 170 GLN 170 167 167 GLN GLN A . n A 1 171 THR 171 168 168 THR THR A . n A 1 172 ASP 172 169 169 ASP ASP A . n A 1 173 ASP 173 170 170 ASP ASP A . n A 1 174 GLU 174 171 171 GLU GLU A . n A 1 175 VAL 175 172 172 VAL VAL A . n A 1 176 ARG 176 173 173 ARG ARG A . n A 1 177 LEU 177 174 174 LEU LEU A . n A 1 178 ALA 178 175 175 ALA ALA A . n A 1 179 GLU 179 176 176 GLU GLU A . n A 1 180 LEU 180 177 177 LEU LEU A . n A 1 181 LEU 181 178 178 LEU LEU A . n A 1 182 THR 182 179 179 THR THR A . n A 1 183 ALA 183 180 180 ALA ALA A . n A 1 184 ALA 184 181 181 ALA ALA A . n A 1 185 GLY 185 182 182 GLY GLY A . n A 1 186 ILE 186 183 183 ILE ILE A . n A 1 187 ARG 187 184 184 ARG ARG A . n A 1 188 ALA 188 185 185 ALA ALA A . n A 1 189 TYR 189 186 186 TYR TYR A . n A 1 190 ASN 190 187 187 ASN ASN A . n A 1 191 PRO 191 188 188 PRO PRO A . n A 1 192 THR 192 189 189 THR THR A . n A 1 193 ASP 193 190 190 ASP ASP A . n A 1 194 ILE 194 191 191 ILE ILE A . n A 1 195 ASP 195 192 192 ASP ASP A . n A 1 196 TRP 196 193 193 TRP TRP A . n A 1 197 TYR 197 194 194 TYR TYR A . n A 1 198 ILE 198 195 195 ILE ILE A . n A 1 199 MSE 199 196 196 MSE MSE A . n A 1 200 LYS 200 197 197 LYS LYS A . n A 1 201 LYS 201 198 198 LYS LYS A . n A 1 202 PHE 202 199 199 PHE PHE A . n A 1 203 MSE 203 200 200 MSE MSE A . n A 1 204 MSE 204 201 201 MSE MSE A . n A 1 205 ILE 205 202 202 ILE ILE A . n A 1 206 SER 206 203 203 SER SER A . n A 1 207 VAL 207 204 204 VAL VAL A . n A 1 208 THR 208 205 205 THR THR A . n A 1 209 ALA 209 206 206 ALA ALA A . n A 1 210 THR 210 207 207 THR THR A . n A 1 211 ALA 211 208 208 ALA ALA A . n A 1 212 THR 212 209 209 THR THR A . n A 1 213 ALA 213 210 210 ALA ALA A . n A 1 214 TYR 214 211 211 TYR TYR A . n A 1 215 PHE 215 212 212 PHE PHE A . n A 1 216 ASP 216 213 213 ASP ASP A . n A 1 217 LYS 217 214 214 LYS LYS A . n A 1 218 PRO 218 215 215 PRO PRO A . n A 1 219 ILE 219 216 216 ILE ILE A . n A 1 220 GLY 220 217 217 GLY GLY A . n A 1 221 SER 221 218 218 SER SER A . n A 1 222 ILE 222 219 219 ILE ILE A . n A 1 223 LEU 223 220 220 LEU LEU A . n A 1 224 THR 224 221 221 THR THR A . n A 1 225 GLU 225 222 222 GLU GLU A . n A 1 226 HIS 226 223 223 HIS HIS A . n A 1 227 GLU 227 224 224 GLU GLU A . n A 1 228 PRO 228 225 225 PRO PRO A . n A 1 229 GLU 229 226 226 GLU GLU A . n A 1 230 LEU 230 227 227 LEU LEU A . n A 1 231 LEU 231 228 228 LEU LEU A . n A 1 232 SER 232 229 229 SER SER A . n A 1 233 LEU 233 230 230 LEU LEU A . n A 1 234 LEU 234 231 231 LEU LEU A . n A 1 235 GLU 235 232 232 GLU GLU A . n A 1 236 GLU 236 233 233 GLU GLU A . n A 1 237 VAL 237 234 234 VAL VAL A . n A 1 238 ALA 238 235 235 ALA ALA A . n A 1 239 GLU 239 236 236 GLU GLU A . n A 1 240 LEU 240 237 237 LEU LEU A . n A 1 241 PHE 241 238 238 PHE PHE A . n A 1 242 ARG 242 239 239 ARG ARG A . n A 1 243 ALA 243 240 240 ALA ALA A . n A 1 244 LYS 244 241 241 LYS LYS A . n A 1 245 TYR 245 242 242 TYR TYR A . n A 1 246 GLY 246 243 243 GLY GLY A . n A 1 247 GLN 247 244 244 GLN GLN A . n A 1 248 VAL 248 245 245 VAL VAL A . n A 1 249 PRO 249 246 246 PRO PRO A . n A 1 250 ASP 250 247 247 ASP ASP A . n A 1 251 ASP 251 248 248 ASP ASP A . n A 1 252 VAL 252 249 249 VAL VAL A . n A 1 253 VAL 253 250 250 VAL VAL A . n A 1 254 GLN 254 251 251 GLN GLN A . n A 1 255 GLN 255 252 252 GLN GLN A . n A 1 256 LEU 256 253 253 LEU LEU A . n A 1 257 LEU 257 254 254 LEU LEU A . n A 1 258 ASP 258 255 255 ASP ASP A . n A 1 259 LYS 259 256 256 LYS LYS A . n A 1 260 GLN 260 257 257 GLN GLN A . n A 1 261 ARG 261 258 258 ARG ARG A . n A 1 262 LYS 262 259 259 LYS LYS A . n A 1 263 MSE 263 260 260 MSE MSE A . n A 1 264 PRO 264 261 ? ? ? A . n A 1 265 PRO 265 262 ? ? ? A . n A 1 266 GLU 266 263 ? ? ? A . n A 1 267 SER 267 264 ? ? ? A . n A 1 268 THR 268 265 ? ? ? A . n A 1 269 SER 269 266 ? ? ? A . n A 1 270 SER 270 267 ? ? ? A . n A 1 271 MSE 271 268 ? ? ? A . n A 1 272 HIS 272 269 ? ? ? A . n A 1 273 SER 273 270 ? ? ? A . n A 1 274 ASP 274 271 ? ? ? A . n A 1 275 PHE 275 272 ? ? ? A . n A 1 276 LEU 276 273 ? ? ? A . n A 1 277 GLN 277 274 ? ? ? A . n A 1 278 GLY 278 275 ? ? ? A . n A 1 279 GLY 279 276 ? ? ? A . n A 1 280 SER 280 277 ? ? ? A . n A 1 281 THR 281 278 ? ? ? A . n A 1 282 GLU 282 279 ? ? ? A . n A 1 283 VAL 283 280 ? ? ? A . n A 1 284 GLU 284 281 281 GLU GLU A . n A 1 285 THR 285 282 282 THR THR A . n A 1 286 LEU 286 283 283 LEU LEU A . n A 1 287 THR 287 284 284 THR THR A . n A 1 288 GLY 288 285 285 GLY GLY A . n A 1 289 TYR 289 286 286 TYR TYR A . n A 1 290 VAL 290 287 287 VAL VAL A . n A 1 291 VAL 291 288 288 VAL VAL A . n A 1 292 ARG 292 289 289 ARG ARG A . n A 1 293 GLU 293 290 290 GLU GLU A . n A 1 294 ALA 294 291 291 ALA ALA A . n A 1 295 GLU 295 292 292 GLU GLU A . n A 1 296 ALA 296 293 293 ALA ALA A . n A 1 297 LEU 297 294 294 LEU LEU A . n A 1 298 ARG 298 295 295 ARG ARG A . n A 1 299 VAL 299 296 296 VAL VAL A . n A 1 300 ASP 300 297 297 ASP ASP A . n A 1 301 LEU 301 298 298 LEU LEU A . n A 1 302 PRO 302 299 299 PRO PRO A . n A 1 303 MSE 303 300 300 MSE MSE A . n A 1 304 TYR 304 301 301 TYR TYR A . n A 1 305 LYS 305 302 302 LYS LYS A . n A 1 306 ARG 306 303 303 ARG ARG A . n A 1 307 MSE 307 304 304 MSE MSE A . n A 1 308 TYR 308 305 305 TYR TYR A . n A 1 309 ARG 309 306 306 ARG ARG A . n A 1 310 GLU 310 307 307 GLU GLU A . n A 1 311 LEU 311 308 308 LEU LEU A . n A 1 312 VAL 312 309 309 VAL VAL A . n A 1 313 SER 313 310 310 SER SER A . n A 1 314 ARG 314 311 ? ? ? A . n A 1 315 THR 315 312 ? ? ? A . n A 1 316 ALA 316 313 ? ? ? A . n A 1 317 ASN 317 314 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 315 1 SO4 SO4 A . C 2 SO4 1 316 2 SO4 SO4 A . D 2 SO4 1 317 3 SO4 SO4 A . E 2 SO4 1 318 4 SO4 SO4 A . F 2 SO4 1 319 5 SO4 SO4 A . G 3 EDO 1 320 1 EDO EDO A . H 3 EDO 1 321 2 EDO EDO A . I 3 EDO 1 322 3 EDO EDO A . J 3 EDO 1 323 4 EDO EDO A . K 3 EDO 1 324 5 EDO EDO A . L 4 HOH 1 325 1 HOH HOH A . L 4 HOH 2 326 2 HOH HOH A . L 4 HOH 3 327 3 HOH HOH A . L 4 HOH 4 328 4 HOH HOH A . L 4 HOH 5 329 5 HOH HOH A . L 4 HOH 6 330 6 HOH HOH A . L 4 HOH 7 331 7 HOH HOH A . L 4 HOH 8 332 8 HOH HOH A . L 4 HOH 9 333 9 HOH HOH A . L 4 HOH 10 334 10 HOH HOH A . L 4 HOH 11 335 11 HOH HOH A . L 4 HOH 12 336 12 HOH HOH A . L 4 HOH 13 337 13 HOH HOH A . L 4 HOH 14 338 14 HOH HOH A . L 4 HOH 15 339 15 HOH HOH A . L 4 HOH 16 340 16 HOH HOH A . L 4 HOH 17 341 17 HOH HOH A . L 4 HOH 18 342 18 HOH HOH A . L 4 HOH 19 343 19 HOH HOH A . L 4 HOH 20 344 20 HOH HOH A . L 4 HOH 21 345 21 HOH HOH A . L 4 HOH 22 346 22 HOH HOH A . L 4 HOH 23 347 23 HOH HOH A . L 4 HOH 24 348 24 HOH HOH A . L 4 HOH 25 349 25 HOH HOH A . L 4 HOH 26 350 26 HOH HOH A . L 4 HOH 27 351 27 HOH HOH A . L 4 HOH 28 352 28 HOH HOH A . L 4 HOH 29 353 29 HOH HOH A . L 4 HOH 30 354 30 HOH HOH A . L 4 HOH 31 355 31 HOH HOH A . L 4 HOH 32 356 32 HOH HOH A . L 4 HOH 33 357 33 HOH HOH A . L 4 HOH 34 358 34 HOH HOH A . L 4 HOH 35 359 35 HOH HOH A . L 4 HOH 36 360 36 HOH HOH A . L 4 HOH 37 361 37 HOH HOH A . L 4 HOH 38 362 38 HOH HOH A . L 4 HOH 39 363 39 HOH HOH A . L 4 HOH 40 364 40 HOH HOH A . L 4 HOH 41 365 41 HOH HOH A . L 4 HOH 42 366 42 HOH HOH A . L 4 HOH 43 367 43 HOH HOH A . L 4 HOH 44 368 44 HOH HOH A . L 4 HOH 45 369 45 HOH HOH A . L 4 HOH 46 370 46 HOH HOH A . L 4 HOH 47 371 47 HOH HOH A . L 4 HOH 48 372 48 HOH HOH A . L 4 HOH 49 373 49 HOH HOH A . L 4 HOH 50 374 50 HOH HOH A . L 4 HOH 51 375 51 HOH HOH A . L 4 HOH 52 376 52 HOH HOH A . L 4 HOH 53 377 53 HOH HOH A . L 4 HOH 54 378 54 HOH HOH A . L 4 HOH 55 379 55 HOH HOH A . L 4 HOH 56 380 56 HOH HOH A . L 4 HOH 57 381 57 HOH HOH A . L 4 HOH 58 382 58 HOH HOH A . L 4 HOH 59 383 59 HOH HOH A . L 4 HOH 60 384 60 HOH HOH A . L 4 HOH 61 385 61 HOH HOH A . L 4 HOH 62 386 62 HOH HOH A . L 4 HOH 63 387 63 HOH HOH A . L 4 HOH 64 388 64 HOH HOH A . L 4 HOH 65 389 65 HOH HOH A . L 4 HOH 66 390 66 HOH HOH A . L 4 HOH 67 391 67 HOH HOH A . L 4 HOH 68 392 68 HOH HOH A . L 4 HOH 69 393 69 HOH HOH A . L 4 HOH 70 394 70 HOH HOH A . L 4 HOH 71 395 71 HOH HOH A . L 4 HOH 72 396 72 HOH HOH A . L 4 HOH 73 397 73 HOH HOH A . L 4 HOH 74 398 74 HOH HOH A . L 4 HOH 75 399 75 HOH HOH A . L 4 HOH 76 400 76 HOH HOH A . L 4 HOH 77 401 77 HOH HOH A . L 4 HOH 78 402 78 HOH HOH A . L 4 HOH 79 403 79 HOH HOH A . L 4 HOH 80 404 80 HOH HOH A . L 4 HOH 81 405 81 HOH HOH A . L 4 HOH 82 406 82 HOH HOH A . L 4 HOH 83 407 83 HOH HOH A . L 4 HOH 84 408 84 HOH HOH A . L 4 HOH 85 409 85 HOH HOH A . L 4 HOH 86 410 86 HOH HOH A . L 4 HOH 87 411 87 HOH HOH A . L 4 HOH 88 412 88 HOH HOH A . L 4 HOH 89 413 89 HOH HOH A . L 4 HOH 90 414 90 HOH HOH A . L 4 HOH 91 415 91 HOH HOH A . L 4 HOH 92 416 92 HOH HOH A . L 4 HOH 93 417 93 HOH HOH A . L 4 HOH 94 418 94 HOH HOH A . L 4 HOH 95 419 95 HOH HOH A . L 4 HOH 96 420 96 HOH HOH A . L 4 HOH 97 421 97 HOH HOH A . L 4 HOH 98 422 99 HOH HOH A . L 4 HOH 99 423 100 HOH HOH A . L 4 HOH 100 424 101 HOH HOH A . L 4 HOH 101 425 102 HOH HOH A . L 4 HOH 102 426 103 HOH HOH A . L 4 HOH 103 427 104 HOH HOH A . L 4 HOH 104 428 105 HOH HOH A . L 4 HOH 105 429 106 HOH HOH A . L 4 HOH 106 430 107 HOH HOH A . L 4 HOH 107 431 108 HOH HOH A . L 4 HOH 108 432 109 HOH HOH A . L 4 HOH 109 433 110 HOH HOH A . L 4 HOH 110 434 111 HOH HOH A . L 4 HOH 111 435 112 HOH HOH A . L 4 HOH 112 436 113 HOH HOH A . L 4 HOH 113 437 114 HOH HOH A . L 4 HOH 114 438 115 HOH HOH A . L 4 HOH 115 439 116 HOH HOH A . L 4 HOH 116 440 117 HOH HOH A . L 4 HOH 117 441 118 HOH HOH A . L 4 HOH 118 442 119 HOH HOH A . L 4 HOH 119 443 120 HOH HOH A . L 4 HOH 120 444 121 HOH HOH A . L 4 HOH 121 445 122 HOH HOH A . L 4 HOH 122 446 123 HOH HOH A . L 4 HOH 123 447 124 HOH HOH A . L 4 HOH 124 448 125 HOH HOH A . L 4 HOH 125 449 126 HOH HOH A . L 4 HOH 126 450 127 HOH HOH A . L 4 HOH 127 451 128 HOH HOH A . L 4 HOH 128 452 129 HOH HOH A . L 4 HOH 129 453 130 HOH HOH A . L 4 HOH 130 454 131 HOH HOH A . L 4 HOH 131 455 132 HOH HOH A . L 4 HOH 132 456 133 HOH HOH A . L 4 HOH 133 457 134 HOH HOH A . L 4 HOH 134 458 135 HOH HOH A . L 4 HOH 135 459 136 HOH HOH A . L 4 HOH 136 460 137 HOH HOH A . L 4 HOH 137 461 138 HOH HOH A . L 4 HOH 138 462 139 HOH HOH A . L 4 HOH 139 463 140 HOH HOH A . L 4 HOH 140 464 141 HOH HOH A . L 4 HOH 141 465 143 HOH HOH A . L 4 HOH 142 466 144 HOH HOH A . L 4 HOH 143 467 145 HOH HOH A . L 4 HOH 144 468 146 HOH HOH A . L 4 HOH 145 469 147 HOH HOH A . L 4 HOH 146 470 148 HOH HOH A . L 4 HOH 147 471 149 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 26 A MSE 23 ? MET SELENOMETHIONINE 2 A MSE 96 A MSE 93 ? MET SELENOMETHIONINE 3 A MSE 106 A MSE 103 ? MET SELENOMETHIONINE 4 A MSE 126 A MSE 123 ? MET SELENOMETHIONINE 5 A MSE 199 A MSE 196 ? MET SELENOMETHIONINE 6 A MSE 203 A MSE 200 ? MET SELENOMETHIONINE 7 A MSE 204 A MSE 201 ? MET SELENOMETHIONINE 8 A MSE 263 A MSE 260 ? MET SELENOMETHIONINE 9 A MSE 303 A MSE 300 ? MET SELENOMETHIONINE 10 A MSE 307 A MSE 304 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-09-04 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 40.8870 21.3250 35.7410 -0.1434 -0.1499 -0.3167 -0.0149 0.0009 -0.0090 2.6513 1.0355 1.9008 -0.6739 -1.1241 -0.0517 -0.0029 0.0292 0.0289 0.0518 0.0498 0.0844 -0.1504 -0.0694 -0.0469 'X-RAY DIFFRACTION' 2 ? refined 25.0250 21.8310 12.7870 0.0350 0.3585 0.0052 -0.0660 0.0129 0.0664 6.3784 7.0298 16.7711 2.4181 8.1315 5.6380 -0.0658 0.1653 -0.4713 -0.3506 0.0614 0.4173 -0.0611 -0.6691 0.0045 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 4 A 7 A 189 A 192 ? 'X-RAY DIFFRACTION' ? 2 2 A 190 A 193 A 260 A 263 ? 'X-RAY DIFFRACTION' ? 3 2 A 281 A 284 A 310 A 313 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 MLPHARE phasing . ? 5 HKL-3000 phasing . ? 6 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 SEE REMARK 350 FOR THE PROGRAM GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN THIS ENTRY. AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS EXPERIMENTALLY UNKNOWN. ; # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 292 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 292 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.338 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation 0.086 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 50 ? ? CZ A ARG 50 ? ? NH1 A ARG 50 ? ? 123.97 120.30 3.67 0.50 N 2 1 NE A ARG 50 ? ? CZ A ARG 50 ? ? NH2 A ARG 50 ? ? 116.73 120.30 -3.57 0.50 N 3 1 NE A ARG 67 ? A CZ A ARG 67 ? A NH2 A ARG 67 ? A 117.00 120.30 -3.30 0.50 N 4 1 C A VAL 245 ? ? N A PRO 246 ? ? CA A PRO 246 ? ? 130.17 119.30 10.87 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 13 ? ? -110.72 52.87 2 1 ASP A 32 ? ? -102.10 79.00 3 1 ASP A 118 ? ? -146.74 33.44 4 1 SER A 140 ? ? -108.39 79.65 5 1 GLN A 244 ? ? -115.25 -89.91 6 1 VAL A 245 ? ? 64.30 93.40 7 1 PRO A 246 ? ? -19.73 -152.22 8 1 THR A 284 ? ? -124.00 -58.40 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ALA 0 ? A ALA 3 4 1 Y 1 A MSE 1 ? A MSE 4 5 1 Y 1 A ASN 2 ? A ASN 5 6 1 Y 1 A GLN 3 ? A GLN 6 7 1 Y 1 A PRO 261 ? A PRO 264 8 1 Y 1 A PRO 262 ? A PRO 265 9 1 Y 1 A GLU 263 ? A GLU 266 10 1 Y 1 A SER 264 ? A SER 267 11 1 Y 1 A THR 265 ? A THR 268 12 1 Y 1 A SER 266 ? A SER 269 13 1 Y 1 A SER 267 ? A SER 270 14 1 Y 1 A MSE 268 ? A MSE 271 15 1 Y 1 A HIS 269 ? A HIS 272 16 1 Y 1 A SER 270 ? A SER 273 17 1 Y 1 A ASP 271 ? A ASP 274 18 1 Y 1 A PHE 272 ? A PHE 275 19 1 Y 1 A LEU 273 ? A LEU 276 20 1 Y 1 A GLN 274 ? A GLN 277 21 1 Y 1 A GLY 275 ? A GLY 278 22 1 Y 1 A GLY 276 ? A GLY 279 23 1 Y 1 A SER 277 ? A SER 280 24 1 Y 1 A THR 278 ? A THR 281 25 1 Y 1 A GLU 279 ? A GLU 282 26 1 Y 1 A VAL 280 ? A VAL 283 27 1 Y 1 A ARG 311 ? A ARG 314 28 1 Y 1 A THR 312 ? A THR 315 29 1 Y 1 A ALA 313 ? A ALA 316 30 1 Y 1 A ASN 314 ? A ASN 317 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 1,2-ETHANEDIOL EDO 4 water HOH #