data_2QYW # _entry.id 2QYW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QYW RCSB RCSB044218 WWPDB D_1000044218 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2QYW _pdbx_database_status.recvd_initial_deposition_date 2007-08-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Miller, S.E.' 1 'Collins, B.M.' 2 'McCoy, A.J.' 3 'Robinson, M.S.' 4 'Owen, D.J.' 5 # _citation.id primary _citation.title 'A SNARE-adaptor interaction is a new mode of cargo recognition in clathrin-coated vesicles.' _citation.journal_abbrev Nature _citation.journal_volume 450 _citation.page_first 570 _citation.page_last 574 _citation.year 2007 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18033301 _citation.pdbx_database_id_DOI 10.1038/nature06353 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Miller, S.E.' 1 primary 'Collins, B.M.' 2 primary 'McCoy, A.J.' 3 primary 'Robinson, M.S.' 4 primary 'Owen, D.J.' 5 # _cell.entry_id 2QYW _cell.length_a 24.227 _cell.length_b 25.167 _cell.length_c 80.115 _cell.angle_alpha 90.00 _cell.angle_beta 95.23 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2QYW _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Vesicle transport through interaction with t-SNAREs 1B homolog' 11974.978 1 ? ? Habc ? 2 water nat water 18.015 52 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSPGIH(MSE)AASAASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAE(MSE)EEEL RYAPLTFRNP(MSE)(MSE)SKLRNYRKDLAKLHREVR ; _entity_poly.pdbx_seq_one_letter_code_can ;GSPGIHMAASAASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFR NPMMSKLRNYRKDLAKLHREVR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 GLY n 1 5 ILE n 1 6 HIS n 1 7 MSE n 1 8 ALA n 1 9 ALA n 1 10 SER n 1 11 ALA n 1 12 ALA n 1 13 SER n 1 14 SER n 1 15 GLU n 1 16 HIS n 1 17 PHE n 1 18 GLU n 1 19 LYS n 1 20 LEU n 1 21 HIS n 1 22 GLU n 1 23 ILE n 1 24 PHE n 1 25 ARG n 1 26 GLY n 1 27 LEU n 1 28 LEU n 1 29 GLU n 1 30 ASP n 1 31 LEU n 1 32 GLN n 1 33 GLY n 1 34 VAL n 1 35 PRO n 1 36 GLU n 1 37 ARG n 1 38 LEU n 1 39 LEU n 1 40 GLY n 1 41 THR n 1 42 ALA n 1 43 GLY n 1 44 THR n 1 45 GLU n 1 46 GLU n 1 47 LYS n 1 48 LYS n 1 49 LYS n 1 50 LEU n 1 51 VAL n 1 52 ARG n 1 53 ASP n 1 54 PHE n 1 55 ASP n 1 56 GLU n 1 57 LYS n 1 58 GLN n 1 59 GLN n 1 60 GLU n 1 61 ALA n 1 62 ASN n 1 63 GLU n 1 64 THR n 1 65 LEU n 1 66 ALA n 1 67 GLU n 1 68 MSE n 1 69 GLU n 1 70 GLU n 1 71 GLU n 1 72 LEU n 1 73 ARG n 1 74 TYR n 1 75 ALA n 1 76 PRO n 1 77 LEU n 1 78 THR n 1 79 PHE n 1 80 ARG n 1 81 ASN n 1 82 PRO n 1 83 MSE n 1 84 MSE n 1 85 SER n 1 86 LYS n 1 87 LEU n 1 88 ARG n 1 89 ASN n 1 90 TYR n 1 91 ARG n 1 92 LYS n 1 93 ASP n 1 94 LEU n 1 95 ALA n 1 96 LYS n 1 97 LEU n 1 98 HIS n 1 99 ARG n 1 100 GLU n 1 101 VAL n 1 102 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene Vti1b _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)/plysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q91XH6_MOUSE _struct_ref.pdbx_db_accession Q91XH6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAASAASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSK LRNYRKDLAKLHREVR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QYW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 102 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q91XH6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 96 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 96 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QYW GLY A 1 ? UNP Q91XH6 ? ? 'EXPRESSION TAG' -5 1 1 2QYW SER A 2 ? UNP Q91XH6 ? ? 'EXPRESSION TAG' -4 2 1 2QYW PRO A 3 ? UNP Q91XH6 ? ? 'EXPRESSION TAG' -3 3 1 2QYW GLY A 4 ? UNP Q91XH6 ? ? 'EXPRESSION TAG' -2 4 1 2QYW ILE A 5 ? UNP Q91XH6 ? ? 'EXPRESSION TAG' -1 5 1 2QYW HIS A 6 ? UNP Q91XH6 ? ? 'EXPRESSION TAG' 0 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2QYW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '100 mM Tris, 30% ethanol and 20% glycerol, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.87 # _reflns.entry_id 2QYW _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 4.0 _reflns.d_resolution_low 79 _reflns.d_resolution_high 2.0 _reflns.number_obs 6751 _reflns.number_all ? _reflns.percent_possible_obs 96.9 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 96.9 _reflns_shell.Rmerge_I_obs 0.49 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.0 _reflns_shell.pdbx_redundancy 7.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2QYW _refine.ls_number_reflns_obs 5850 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 96.40 _refine.ls_R_factor_obs 0.22518 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21815 _refine.ls_R_factor_R_free 0.29653 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 648 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.884 _refine.B_iso_mean 40.105 _refine.aniso_B[1][1] -0.05 _refine.aniso_B[2][2] 1.38 _refine.aniso_B[3][3] -1.31 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.13 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.265 _refine.pdbx_overall_ESU_R_Free 0.235 _refine.overall_SU_ML 0.140 _refine.overall_SU_B 9.984 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 787 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 839 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.023 0.022 ? 798 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.678 1.990 ? 1066 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.508 5.000 ? 95 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.936 23.721 ? 43 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.031 15.000 ? 162 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 26.968 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.113 0.200 ? 113 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 603 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.230 0.200 ? 314 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.287 0.200 ? 519 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.197 0.200 ? 33 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.251 0.200 ? 37 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.155 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.278 1.500 ? 503 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.848 2.000 ? 763 'X-RAY DIFFRACTION' ? r_scbond_it 3.344 3.000 ? 334 'X-RAY DIFFRACTION' ? r_scangle_it 4.866 4.500 ? 303 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.051 _refine_ls_shell.number_reflns_R_work 326 _refine_ls_shell.R_factor_R_work 0.199 _refine_ls_shell.percent_reflns_obs 73.83 _refine_ls_shell.R_factor_R_free 0.251 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 38 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QYW _struct.title 'Crystal structure of mouse vti1b Habc domain' _struct.pdbx_descriptor 'Vesicle transport through interaction with t-SNAREs 1B homolog' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QYW _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT, ENDOCYTOSIS' _struct_keywords.text 'Habc domain, PROTEIN TRANSPORT, ENDOCYTOSIS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 7 ? GLY A 40 ? MSE A 1 GLY A 34 1 ? 34 HELX_P HELX_P2 2 THR A 44 ? TYR A 74 ? THR A 38 TYR A 68 1 ? 31 HELX_P HELX_P3 3 PRO A 76 ? ARG A 102 ? PRO A 70 ARG A 96 1 ? 27 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 7 C ? ? ? 1_555 A ALA 8 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale ? ? A GLU 67 C ? ? ? 1_555 A MSE 68 N ? ? A GLU 61 A MSE 62 1_555 ? ? ? ? ? ? ? 1.309 ? covale3 covale ? ? A MSE 68 C ? ? ? 1_555 A GLU 69 N ? ? A MSE 62 A GLU 63 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A PRO 82 C ? ? ? 1_555 A MSE 83 N ? ? A PRO 76 A MSE 77 1_555 ? ? ? ? ? ? ? 1.334 ? covale5 covale ? ? A MSE 83 C ? ? ? 1_555 A MSE 84 N ? ? A MSE 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.338 ? covale6 covale ? ? A MSE 84 C ? ? ? 1_555 A SER 85 N ? ? A MSE 78 A SER 79 1_555 ? ? ? ? ? ? ? 1.334 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2QYW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2QYW _atom_sites.fract_transf_matrix[1][1] 0.041276 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003778 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.039735 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012534 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -5 ? ? ? A . n A 1 2 SER 2 -4 ? ? ? A . n A 1 3 PRO 3 -3 ? ? ? A . n A 1 4 GLY 4 -2 ? ? ? A . n A 1 5 ILE 5 -1 ? ? ? A . n A 1 6 HIS 6 0 ? ? ? A . n A 1 7 MSE 7 1 1 MSE MSE A . n A 1 8 ALA 8 2 2 ALA ALA A . n A 1 9 ALA 9 3 3 ALA ALA A . n A 1 10 SER 10 4 4 SER SER A . n A 1 11 ALA 11 5 5 ALA ALA A . n A 1 12 ALA 12 6 6 ALA ALA A . n A 1 13 SER 13 7 7 SER SER A . n A 1 14 SER 14 8 8 SER SER A . n A 1 15 GLU 15 9 9 GLU GLU A . n A 1 16 HIS 16 10 10 HIS HIS A . n A 1 17 PHE 17 11 11 PHE PHE A . n A 1 18 GLU 18 12 12 GLU GLU A . n A 1 19 LYS 19 13 13 LYS LYS A . n A 1 20 LEU 20 14 14 LEU LEU A . n A 1 21 HIS 21 15 15 HIS HIS A . n A 1 22 GLU 22 16 16 GLU GLU A . n A 1 23 ILE 23 17 17 ILE ILE A . n A 1 24 PHE 24 18 18 PHE PHE A . n A 1 25 ARG 25 19 19 ARG ARG A . n A 1 26 GLY 26 20 20 GLY GLY A . n A 1 27 LEU 27 21 21 LEU LEU A . n A 1 28 LEU 28 22 22 LEU LEU A . n A 1 29 GLU 29 23 23 GLU GLU A . n A 1 30 ASP 30 24 24 ASP ASP A . n A 1 31 LEU 31 25 25 LEU LEU A . n A 1 32 GLN 32 26 26 GLN GLN A . n A 1 33 GLY 33 27 27 GLY GLY A . n A 1 34 VAL 34 28 28 VAL VAL A . n A 1 35 PRO 35 29 29 PRO PRO A . n A 1 36 GLU 36 30 30 GLU GLU A . n A 1 37 ARG 37 31 31 ARG ARG A . n A 1 38 LEU 38 32 32 LEU LEU A . n A 1 39 LEU 39 33 33 LEU LEU A . n A 1 40 GLY 40 34 34 GLY GLY A . n A 1 41 THR 41 35 35 THR THR A . n A 1 42 ALA 42 36 36 ALA ALA A . n A 1 43 GLY 43 37 37 GLY GLY A . n A 1 44 THR 44 38 38 THR THR A . n A 1 45 GLU 45 39 39 GLU GLU A . n A 1 46 GLU 46 40 40 GLU GLU A . n A 1 47 LYS 47 41 41 LYS LYS A . n A 1 48 LYS 48 42 42 LYS LYS A . n A 1 49 LYS 49 43 43 LYS LYS A . n A 1 50 LEU 50 44 44 LEU LEU A . n A 1 51 VAL 51 45 45 VAL VAL A . n A 1 52 ARG 52 46 46 ARG ARG A . n A 1 53 ASP 53 47 47 ASP ASP A . n A 1 54 PHE 54 48 48 PHE PHE A . n A 1 55 ASP 55 49 49 ASP ASP A . n A 1 56 GLU 56 50 50 GLU GLU A . n A 1 57 LYS 57 51 51 LYS LYS A . n A 1 58 GLN 58 52 52 GLN GLN A . n A 1 59 GLN 59 53 53 GLN GLN A . n A 1 60 GLU 60 54 54 GLU GLU A . n A 1 61 ALA 61 55 55 ALA ALA A . n A 1 62 ASN 62 56 56 ASN ASN A . n A 1 63 GLU 63 57 57 GLU GLU A . n A 1 64 THR 64 58 58 THR THR A . n A 1 65 LEU 65 59 59 LEU LEU A . n A 1 66 ALA 66 60 60 ALA ALA A . n A 1 67 GLU 67 61 61 GLU GLU A . n A 1 68 MSE 68 62 62 MSE MSE A . n A 1 69 GLU 69 63 63 GLU GLU A . n A 1 70 GLU 70 64 64 GLU GLU A . n A 1 71 GLU 71 65 65 GLU GLU A . n A 1 72 LEU 72 66 66 LEU LEU A . n A 1 73 ARG 73 67 67 ARG ARG A . n A 1 74 TYR 74 68 68 TYR TYR A . n A 1 75 ALA 75 69 69 ALA ALA A . n A 1 76 PRO 76 70 70 PRO PRO A . n A 1 77 LEU 77 71 71 LEU LEU A . n A 1 78 THR 78 72 72 THR THR A . n A 1 79 PHE 79 73 73 PHE PHE A . n A 1 80 ARG 80 74 74 ARG ARG A . n A 1 81 ASN 81 75 75 ASN ASN A . n A 1 82 PRO 82 76 76 PRO PRO A . n A 1 83 MSE 83 77 77 MSE MSE A . n A 1 84 MSE 84 78 78 MSE MSE A . n A 1 85 SER 85 79 79 SER SER A . n A 1 86 LYS 86 80 80 LYS LYS A . n A 1 87 LEU 87 81 81 LEU LEU A . n A 1 88 ARG 88 82 82 ARG ARG A . n A 1 89 ASN 89 83 83 ASN ASN A . n A 1 90 TYR 90 84 84 TYR TYR A . n A 1 91 ARG 91 85 85 ARG ARG A . n A 1 92 LYS 92 86 86 LYS LYS A . n A 1 93 ASP 93 87 87 ASP ASP A . n A 1 94 LEU 94 88 88 LEU LEU A . n A 1 95 ALA 95 89 89 ALA ALA A . n A 1 96 LYS 96 90 90 LYS LYS A . n A 1 97 LEU 97 91 91 LEU LEU A . n A 1 98 HIS 98 92 92 HIS HIS A . n A 1 99 ARG 99 93 93 ARG ARG A . n A 1 100 GLU 100 94 94 GLU GLU A . n A 1 101 VAL 101 95 95 VAL VAL A . n A 1 102 ARG 102 96 96 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 97 97 HOH HOH A . B 2 HOH 2 98 98 HOH HOH A . B 2 HOH 3 99 99 HOH HOH A . B 2 HOH 4 100 100 HOH HOH A . B 2 HOH 5 101 101 HOH HOH A . B 2 HOH 6 102 102 HOH HOH A . B 2 HOH 7 103 103 HOH HOH A . B 2 HOH 8 104 104 HOH HOH A . B 2 HOH 9 105 105 HOH HOH A . B 2 HOH 10 106 106 HOH HOH A . B 2 HOH 11 107 107 HOH HOH A . B 2 HOH 12 108 108 HOH HOH A . B 2 HOH 13 109 109 HOH HOH A . B 2 HOH 14 110 110 HOH HOH A . B 2 HOH 15 111 111 HOH HOH A . B 2 HOH 16 112 112 HOH HOH A . B 2 HOH 17 113 113 HOH HOH A . B 2 HOH 18 114 114 HOH HOH A . B 2 HOH 19 115 115 HOH HOH A . B 2 HOH 20 116 116 HOH HOH A . B 2 HOH 21 117 117 HOH HOH A . B 2 HOH 22 118 118 HOH HOH A . B 2 HOH 23 119 119 HOH HOH A . B 2 HOH 24 120 120 HOH HOH A . B 2 HOH 25 121 121 HOH HOH A . B 2 HOH 26 122 122 HOH HOH A . B 2 HOH 27 123 123 HOH HOH A . B 2 HOH 28 124 124 HOH HOH A . B 2 HOH 29 125 125 HOH HOH A . B 2 HOH 30 126 126 HOH HOH A . B 2 HOH 31 127 127 HOH HOH A . B 2 HOH 32 128 128 HOH HOH A . B 2 HOH 33 129 129 HOH HOH A . B 2 HOH 34 130 130 HOH HOH A . B 2 HOH 35 131 131 HOH HOH A . B 2 HOH 36 132 132 HOH HOH A . B 2 HOH 37 133 133 HOH HOH A . B 2 HOH 38 134 134 HOH HOH A . B 2 HOH 39 135 135 HOH HOH A . B 2 HOH 40 136 136 HOH HOH A . B 2 HOH 41 137 137 HOH HOH A . B 2 HOH 42 138 138 HOH HOH A . B 2 HOH 43 139 139 HOH HOH A . B 2 HOH 44 140 140 HOH HOH A . B 2 HOH 45 141 141 HOH HOH A . B 2 HOH 46 142 142 HOH HOH A . B 2 HOH 47 143 143 HOH HOH A . B 2 HOH 48 144 144 HOH HOH A . B 2 HOH 49 145 145 HOH HOH A . B 2 HOH 50 146 146 HOH HOH A . B 2 HOH 51 147 147 HOH HOH A . B 2 HOH 52 148 148 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 7 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 68 A MSE 62 ? MET SELENOMETHIONINE 3 A MSE 83 A MSE 77 ? MET SELENOMETHIONINE 4 A MSE 84 A MSE 78 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-11-27 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -0.3126 15.0016 20.4810 -0.0340 0.0229 -0.0019 0.0530 0.0580 0.0165 3.4565 1.1806 16.9666 1.8280 6.5182 3.9104 0.0499 0.4403 0.0764 -0.1484 0.1323 -0.1866 -0.2526 0.6928 -0.1822 'X-RAY DIFFRACTION' 2 ? refined -6.7252 7.3051 19.6444 0.0166 -0.0129 -0.0008 0.0174 -0.0125 0.0116 0.6371 2.0204 11.4253 0.7735 0.9828 4.0605 -0.0084 0.1442 0.0233 0.0915 -0.0152 0.0714 0.6135 0.0101 0.0236 'X-RAY DIFFRACTION' 3 ? refined -11.3461 18.4711 22.8726 -0.0564 0.0883 -0.0197 0.1060 -0.0221 0.0088 0.9749 2.0427 18.1510 1.3983 3.3915 5.3498 -0.1015 -0.0186 0.3917 -0.1164 -0.4398 0.3404 -0.3167 -1.1320 0.5413 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 7 A 36 A 42 ? 'X-RAY DIFFRACTION' ? 2 2 A 37 A 43 A 70 A 76 ? 'X-RAY DIFFRACTION' ? 3 3 A 71 A 77 A 96 A 102 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SHARP phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 104 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 123 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 67 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 67 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 67 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.08 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.22 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id THR _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 38 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -113.05 _pdbx_validate_torsion.psi -95.47 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -5 ? A GLY 1 2 1 Y 1 A SER -4 ? A SER 2 3 1 Y 1 A PRO -3 ? A PRO 3 4 1 Y 1 A GLY -2 ? A GLY 4 5 1 Y 1 A ILE -1 ? A ILE 5 6 1 Y 1 A HIS 0 ? A HIS 6 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #