HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 15-AUG-07 2QYX OBSLTE 23-JUN-10 2QYX 3NEK TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN MJ0159 FROM TITLE 2 METHANOCALDOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN MJ0159; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN: RESIDUES 306-542; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII DSM 2661; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: DSM 2661, JAL-1, JCM 10045, NBRC 100440; SOURCE 5 ATCC: 43067; SOURCE 6 GENE: DUF128, MJ0159; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,Y.PATSKOVSKY,V.MALASHKEVICH,S.OZYURT,M.DICKEY,B.WU, AUTHOR 2 M.MALETIC,L.RODGERS,J.KOSS,J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK AUTHOR 3 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 3 23-JUN-10 2QYX 1 OBSLTE REVDAT 2 24-FEB-09 2QYX 1 VERSN REVDAT 1 21-AUG-07 2QYX 0 JRNL AUTH J.B.BONANNO,Y.PATSKOVSKY,V.MALASHKEVICH,S.OZYURT,M.DICKEY, JRNL AUTH 2 B.WU,M.MALETIC,L.RODGERS,J.KOSS,J.M.SAUDER,S.K.BURLEY, JRNL AUTH 3 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN MJ0159 FROM JRNL TITL 2 METHANOCALDOCOCCUS JANNASCHII. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 14824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 472 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1051 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : -0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.346 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.348 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.298 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.603 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3585 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4821 ; 1.100 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 440 ; 5.689 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;37.973 ;25.030 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;18.741 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;14.716 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2638 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1456 ; 0.120 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2405 ; 0.299 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 171 ; 0.134 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.042 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.138 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2258 ; 4.105 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3536 ; 6.085 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1484 ; 9.524 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1285 ;13.192 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 321 A 539 1 REMARK 3 1 B 320 B 539 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1741 ; 0.37 ; 0.05 REMARK 3 TIGHT THERMAL 1 B (A**2): 1741 ; 6.02 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 321 A 539 REMARK 3 ORIGIN FOR THE GROUP (A): -18.8810 -19.4750 -13.7090 REMARK 3 T TENSOR REMARK 3 T11: 0.0893 T22: 0.1147 REMARK 3 T33: 0.0241 T12: 0.0318 REMARK 3 T13: -0.0624 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.9884 L22: 3.4360 REMARK 3 L33: 4.1013 L12: -0.7705 REMARK 3 L13: -1.4879 L23: -0.4742 REMARK 3 S TENSOR REMARK 3 S11: -0.0780 S12: -0.0823 S13: 0.0610 REMARK 3 S21: -0.0093 S22: 0.1702 S23: 0.1545 REMARK 3 S31: 0.1898 S32: 0.1129 S33: -0.0923 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 320 B 539 REMARK 3 ORIGIN FOR THE GROUP (A): -6.1110 -28.5020 -44.7620 REMARK 3 T TENSOR REMARK 3 T11: 0.1077 T22: 0.2302 REMARK 3 T33: 0.1719 T12: -0.0415 REMARK 3 T13: 0.0560 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 9.5719 L22: 3.9274 REMARK 3 L33: 4.4004 L12: 0.2537 REMARK 3 L13: -0.0500 L23: 0.9857 REMARK 3 S TENSOR REMARK 3 S11: -0.1988 S12: 0.5828 S13: -0.8157 REMARK 3 S21: -0.1833 S22: 0.0596 S23: -0.2187 REMARK 3 S31: 0.2488 S32: 0.1365 S33: 0.1393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QYX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB044219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15452 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.05200 REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : 0.72000 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES PH 6.7, 40% MPD, 10% REMARK 280 GLYCEROL, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.80700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.61400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.61400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.80700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 305 REMARK 465 LEU A 306 REMARK 465 LYS A 307 REMARK 465 LYS A 308 REMARK 465 ASN A 309 REMARK 465 PRO A 310 REMARK 465 ARG A 311 REMARK 465 ASP A 312 REMARK 465 ILE A 313 REMARK 465 VAL A 314 REMARK 465 THR A 315 REMARK 465 LYS A 316 REMARK 465 LYS A 317 REMARK 465 ALA A 318 REMARK 465 ASN A 319 REMARK 465 ILE A 320 REMARK 465 GLU A 541 REMARK 465 ILE A 542 REMARK 465 SER B 305 REMARK 465 LEU B 306 REMARK 465 LYS B 307 REMARK 465 LYS B 308 REMARK 465 ASN B 309 REMARK 465 PRO B 310 REMARK 465 ARG B 311 REMARK 465 ASP B 312 REMARK 465 ILE B 313 REMARK 465 VAL B 314 REMARK 465 THR B 315 REMARK 465 LYS B 316 REMARK 465 LYS B 317 REMARK 465 LYS B 540 REMARK 465 GLU B 541 REMARK 465 ILE B 542 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 377 177.81 69.43 REMARK 500 GLU A 451 -41.75 -135.58 REMARK 500 SER B 377 -172.74 72.24 REMARK 500 GLU B 385 62.37 -110.89 REMARK 500 ASN B 386 61.50 -68.60 REMARK 500 ASP B 387 -40.03 -130.38 REMARK 500 GLU B 422 86.54 -69.60 REMARK 500 ASP B 423 -12.81 -147.40 REMARK 500 ASN B 488 46.08 36.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 385 ASN B 386 -134.66 REMARK 500 GLU B 422 ASP B 423 66.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 543 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10196A RELATED DB: TARGETDB DBREF 2QYX A 306 542 UNP Q57623 Y159_METJA 306 542 DBREF 2QYX B 306 542 UNP Q57623 Y159_METJA 306 542 SEQADV 2QYX SER A 305 UNP Q57623 EXPRESSION TAG SEQADV 2QYX SER B 305 UNP Q57623 EXPRESSION TAG SEQRES 1 A 238 SER LEU LYS LYS ASN PRO ARG ASP ILE VAL THR LYS LYS SEQRES 2 A 238 ALA ASN ILE ARG ILE LYS THR ALA LEU SER LYS MET PHE SEQRES 3 A 238 ASN ALA MET ALA LYS VAL THR TYR ASP ILE ASP GLU ALA SEQRES 4 A 238 ASP GLY ASP VAL ILE VAL ASN THR ALA PHE ILE ASP LYS SEQRES 5 A 238 LYS TYR LEU ASP GLU ALA PHE ASP ILE LEU LYS GLU ALA SEQRES 6 A 238 TYR LYS LYS GLY LEU GLY ILE SER ASP ARG PHE GLY ILE SEQRES 7 A 238 VAL GLU GLU ASN ASP ARG ILE LYS ILE GLN THR ILE CYS SEQRES 8 A 238 ALA VAL THR LEU ASP GLY ILE PHE LEU ARG ASN SER VAL SEQRES 9 A 238 PRO LEU ILE PRO LYS TYR GLY GLY ILE LEU GLU ILE THR SEQRES 10 A 238 GLU ASP LYS GLU ARG PHE ILE ASP ILE ILE GLY TYR ASP SEQRES 11 A 238 GLY SER SER LEU ASP PRO HIS GLU VAL PHE PHE ASN PHE SEQRES 12 A 238 VAL ASP CYS GLU LYS THR PHE LEU ALA GLY PHE ARG GLU SEQRES 13 A 238 VAL HIS ARG VAL ALA ARG GLU LYS LEU GLU GLU VAL LEU SEQRES 14 A 238 LYS LYS LEU ASN TRP ASN GLY ILE LYS ALA ILE GLY GLU SEQRES 15 A 238 PRO ASN ASN GLU LEU TYR GLY ILE GLY VAL ASN LYS ASP SEQRES 16 A 238 MET CYS GLY VAL VAL THR MET GLY GLY ILE ASN PRO LEU SEQRES 17 A 238 VAL LEU LEU LYS GLU ASN GLU ILE PRO ILE GLU LEU LYS SEQRES 18 A 238 ALA MET HIS GLU VAL VAL ARG PHE SER ASP LEU LYS SER SEQRES 19 A 238 TYR LYS GLU ILE SEQRES 1 B 238 SER LEU LYS LYS ASN PRO ARG ASP ILE VAL THR LYS LYS SEQRES 2 B 238 ALA ASN ILE ARG ILE LYS THR ALA LEU SER LYS MET PHE SEQRES 3 B 238 ASN ALA MET ALA LYS VAL THR TYR ASP ILE ASP GLU ALA SEQRES 4 B 238 ASP GLY ASP VAL ILE VAL ASN THR ALA PHE ILE ASP LYS SEQRES 5 B 238 LYS TYR LEU ASP GLU ALA PHE ASP ILE LEU LYS GLU ALA SEQRES 6 B 238 TYR LYS LYS GLY LEU GLY ILE SER ASP ARG PHE GLY ILE SEQRES 7 B 238 VAL GLU GLU ASN ASP ARG ILE LYS ILE GLN THR ILE CYS SEQRES 8 B 238 ALA VAL THR LEU ASP GLY ILE PHE LEU ARG ASN SER VAL SEQRES 9 B 238 PRO LEU ILE PRO LYS TYR GLY GLY ILE LEU GLU ILE THR SEQRES 10 B 238 GLU ASP LYS GLU ARG PHE ILE ASP ILE ILE GLY TYR ASP SEQRES 11 B 238 GLY SER SER LEU ASP PRO HIS GLU VAL PHE PHE ASN PHE SEQRES 12 B 238 VAL ASP CYS GLU LYS THR PHE LEU ALA GLY PHE ARG GLU SEQRES 13 B 238 VAL HIS ARG VAL ALA ARG GLU LYS LEU GLU GLU VAL LEU SEQRES 14 B 238 LYS LYS LEU ASN TRP ASN GLY ILE LYS ALA ILE GLY GLU SEQRES 15 B 238 PRO ASN ASN GLU LEU TYR GLY ILE GLY VAL ASN LYS ASP SEQRES 16 B 238 MET CYS GLY VAL VAL THR MET GLY GLY ILE ASN PRO LEU SEQRES 17 B 238 VAL LEU LEU LYS GLU ASN GLU ILE PRO ILE GLU LEU LYS SEQRES 18 B 238 ALA MET HIS GLU VAL VAL ARG PHE SER ASP LEU LYS SER SEQRES 19 B 238 TYR LYS GLU ILE HET GOL A 1 6 HET GOL A 543 6 HET GOL B 1 6 HETNAM GOL GLYCEROL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *19(H2 O) HELIX 1 1 THR A 324 ALA A 334 1 11 HELIX 2 2 TYR A 358 LYS A 372 1 15 HELIX 3 3 ALA A 396 ASN A 406 1 11 HELIX 4 4 ASP A 434 SER A 436 5 3 HELIX 5 5 ASP A 439 PHE A 444 1 6 HELIX 6 6 PHE A 445 VAL A 448 5 4 HELIX 7 7 ALA A 465 ASN A 477 1 13 HELIX 8 8 ILE A 509 ASN A 518 1 10 HELIX 9 9 SER A 534 LEU A 536 5 3 HELIX 10 10 THR B 324 ALA B 334 1 11 HELIX 11 11 TYR B 358 LYS B 372 1 15 HELIX 12 12 ALA B 396 ASN B 406 1 11 HELIX 13 13 ASP B 439 PHE B 444 1 6 HELIX 14 14 PHE B 445 VAL B 448 5 4 HELIX 15 15 ALA B 465 ASN B 477 1 13 HELIX 16 16 ILE B 509 ASN B 518 1 10 HELIX 17 17 SER B 534 LEU B 536 5 3 SHEET 1 A 5 GLU A 523 ARG A 532 0 SHEET 2 A 5 ASP A 346 ASP A 355 -1 N VAL A 347 O VAL A 531 SHEET 3 A 5 ARG A 388 ILE A 394 -1 O THR A 393 N ASN A 350 SHEET 4 A 5 ARG A 379 GLU A 384 -1 N GLY A 381 O GLN A 392 SHEET 5 A 5 LYS A 537 SER A 538 -1 O LYS A 537 N PHE A 380 SHEET 1 B 5 GLU A 425 GLY A 432 0 SHEET 2 B 5 ILE A 411 ILE A 420 -1 N GLU A 419 O ARG A 426 SHEET 3 B 5 THR A 453 HIS A 462 -1 O PHE A 454 N LEU A 418 SHEET 4 B 5 MET A 500 MET A 506 -1 O VAL A 503 N ARG A 459 SHEET 5 B 5 ILE A 481 ILE A 484 -1 N LYS A 482 O VAL A 504 SHEET 1 C 5 GLU B 523 ARG B 532 0 SHEET 2 C 5 ASP B 346 ASP B 355 -1 N VAL B 347 O VAL B 531 SHEET 3 C 5 ARG B 388 ILE B 394 -1 O THR B 393 N ASN B 350 SHEET 4 C 5 ARG B 379 GLU B 385 -1 N GLY B 381 O GLN B 392 SHEET 5 C 5 LYS B 537 SER B 538 -1 O LYS B 537 N PHE B 380 SHEET 1 D 5 GLU B 425 GLY B 432 0 SHEET 2 D 5 ILE B 411 ILE B 420 -1 N GLU B 419 O ARG B 426 SHEET 3 D 5 THR B 453 HIS B 462 -1 O PHE B 458 N TYR B 414 SHEET 4 D 5 MET B 500 MET B 506 -1 O CYS B 501 N VAL B 461 SHEET 5 D 5 ILE B 481 ILE B 484 -1 N LYS B 482 O VAL B 504 SITE 1 AC1 5 ASN A 350 CYS A 395 ALA A 396 HIS A 441 SITE 2 AC1 5 GLY A 508 SITE 1 AC2 3 LYS A 482 MET A 506 TYR A 539 SITE 1 AC3 5 ASN B 350 ALA B 396 TYR B 433 HIS B 441 SITE 2 AC3 5 GLY B 508 CRYST1 80.009 80.009 116.421 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012499 0.007216 0.000000 0.00000 SCALE2 0.000000 0.014432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008590 0.00000