data_2QYZ # _entry.id 2QYZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.338 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2QYZ RCSB RCSB044221 WWPDB D_1000044221 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id NYSGXRC-10427h _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2QYZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2007-08-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Malashkevich, V.N.' 1 ? 'Toro, R.' 2 ? 'Meyer, A.J.' 3 ? 'Sauder, J.M.' 4 0000-0002-0254-4955 'Wasserman, T.' 5 ? 'Burley, S.K.' 6 0000-0002-2487-9713 'Almo, S.C.' 7 ? 'New York SGX Research Center for Structural Genomics (NYSGXRC)' 8 ? # _citation.id primary _citation.title 'Crystal structure of the uncharacterized protein CTC02137 from Clostridium tetani E88.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Malashkevich, V.N.' 1 ? primary 'Toro, R.' 2 ? primary 'Meyer, A.J.' 3 ? primary 'Sauder, J.M.' 4 ? primary 'Wasserman, T.' 5 ? primary 'Burley, S.K.' 6 0000-0002-2487-9713 primary 'Almo, S.C.' 7 ? # _cell.length_a 40.711 _cell.length_b 40.711 _cell.length_c 156.753 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 2QYZ _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 1 2' _symmetry.entry_id 2QYZ _symmetry.Int_Tables_number 151 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 16384.461 1 ? ? ? ? 2 water nat water 18.015 67 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSLNREVKFRAWDKELNMMVYTKEQTGHIEYNTNPADTINIILNQDDYGYVFMQYTGLKDKNEKEIYEGDIIKKSNRSSN LYEIIYQDSIACFRCKVIKGDIKSFPCLNIGTVRNCEVIGNIYENPELLEEEGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSLNREVKFRAWDKELNMMVYTKEQTGHIEYNTNPADTINIILNQDDYGYVFMQYTGLKDKNEKEIYEGDIIKKSNRSSN LYEIIYQDSIACFRCKVIKGDIKSFPCLNIGTVRNCEVIGNIYENPELLEEEGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGXRC-10427h # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 LEU n 1 4 ASN n 1 5 ARG n 1 6 GLU n 1 7 VAL n 1 8 LYS n 1 9 PHE n 1 10 ARG n 1 11 ALA n 1 12 TRP n 1 13 ASP n 1 14 LYS n 1 15 GLU n 1 16 LEU n 1 17 ASN n 1 18 MET n 1 19 MET n 1 20 VAL n 1 21 TYR n 1 22 THR n 1 23 LYS n 1 24 GLU n 1 25 GLN n 1 26 THR n 1 27 GLY n 1 28 HIS n 1 29 ILE n 1 30 GLU n 1 31 TYR n 1 32 ASN n 1 33 THR n 1 34 ASN n 1 35 PRO n 1 36 ALA n 1 37 ASP n 1 38 THR n 1 39 ILE n 1 40 ASN n 1 41 ILE n 1 42 ILE n 1 43 LEU n 1 44 ASN n 1 45 GLN n 1 46 ASP n 1 47 ASP n 1 48 TYR n 1 49 GLY n 1 50 TYR n 1 51 VAL n 1 52 PHE n 1 53 MET n 1 54 GLN n 1 55 TYR n 1 56 THR n 1 57 GLY n 1 58 LEU n 1 59 LYS n 1 60 ASP n 1 61 LYS n 1 62 ASN n 1 63 GLU n 1 64 LYS n 1 65 GLU n 1 66 ILE n 1 67 TYR n 1 68 GLU n 1 69 GLY n 1 70 ASP n 1 71 ILE n 1 72 ILE n 1 73 LYS n 1 74 LYS n 1 75 SER n 1 76 ASN n 1 77 ARG n 1 78 SER n 1 79 SER n 1 80 ASN n 1 81 LEU n 1 82 TYR n 1 83 GLU n 1 84 ILE n 1 85 ILE n 1 86 TYR n 1 87 GLN n 1 88 ASP n 1 89 SER n 1 90 ILE n 1 91 ALA n 1 92 CYS n 1 93 PHE n 1 94 ARG n 1 95 CYS n 1 96 LYS n 1 97 VAL n 1 98 ILE n 1 99 LYS n 1 100 GLY n 1 101 ASP n 1 102 ILE n 1 103 LYS n 1 104 SER n 1 105 PHE n 1 106 PRO n 1 107 CYS n 1 108 LEU n 1 109 ASN n 1 110 ILE n 1 111 GLY n 1 112 THR n 1 113 VAL n 1 114 ARG n 1 115 ASN n 1 116 CYS n 1 117 GLU n 1 118 VAL n 1 119 ILE n 1 120 GLY n 1 121 ASN n 1 122 ILE n 1 123 TYR n 1 124 GLU n 1 125 ASN n 1 126 PRO n 1 127 GLU n 1 128 LEU n 1 129 LEU n 1 130 GLU n 1 131 GLU n 1 132 GLU n 1 133 GLY n 1 134 HIS n 1 135 HIS n 1 136 HIS n 1 137 HIS n 1 138 HIS n 1 139 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Clostridium _entity_src_gen.pdbx_gene_src_gene CTC_02137 _entity_src_gen.gene_src_species 'Clostridium tetani' _entity_src_gen.gene_src_strain 'E88, Massachusetts' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Clostridium tetani E88' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 212717 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)CODON+RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'BC-pSGX3(BC)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q892G2_CLOTE _struct_ref.pdbx_db_accession Q892G2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NREVKFRAWDKELNMMVYTKEQTGHIEYNTNPADTINIILNQDDYGYVFMQYTGLKDKNEKEIYEGDIIKKSNRSSNLYE IIYQDSIACFRCKVIKGDIKSFPCLNIGTVRNCEVIGNIYENPELLEE ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2QYZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 131 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q892G2 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 129 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 131 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2QYZ MET A 1 ? UNP Q892G2 ? ? 'expression tag' 1 1 1 2QYZ SER A 2 ? UNP Q892G2 ? ? 'expression tag' 2 2 1 2QYZ LEU A 3 ? UNP Q892G2 ? ? 'expression tag' 3 3 1 2QYZ GLU A 132 ? UNP Q892G2 ? ? 'expression tag' 132 4 1 2QYZ GLY A 133 ? UNP Q892G2 ? ? 'expression tag' 133 5 1 2QYZ HIS A 134 ? UNP Q892G2 ? ? 'expression tag' 134 6 1 2QYZ HIS A 135 ? UNP Q892G2 ? ? 'expression tag' 135 7 1 2QYZ HIS A 136 ? UNP Q892G2 ? ? 'expression tag' 136 8 1 2QYZ HIS A 137 ? UNP Q892G2 ? ? 'expression tag' 137 9 1 2QYZ HIS A 138 ? UNP Q892G2 ? ? 'expression tag' 138 10 1 2QYZ HIS A 139 ? UNP Q892G2 ? ? 'expression tag' 139 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 2QYZ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.2M Ammonium sulfate, 0.1M Bis-Tris pH 5.5, 25% PEG 3350, VAPOR DIFFUSION, temperature 294K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-07-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97900 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A # _reflns.entry_id 2QYZ _reflns.d_resolution_high 2.040 _reflns.d_resolution_low 50.000 _reflns.number_obs 16582 _reflns.pdbx_Rmerge_I_obs 0.035 _reflns.pdbx_netI_over_sigmaI 18.300 _reflns.pdbx_chi_squared 1.143 _reflns.pdbx_redundancy 4.900 _reflns.percent_possible_obs 89.300 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.04 2.11 ? ? ? 0.183 ? ? 0.509 2.60 ? 722 39.60 1 1 2.11 2.20 ? ? ? 0.172 ? ? 0.523 3.00 ? 1326 71.60 2 1 2.20 2.30 ? ? ? 0.196 ? ? 1.369 3.50 ? 1656 89.30 3 1 2.30 2.42 ? ? ? 0.109 ? ? 0.618 4.70 ? 1847 98.90 4 1 2.42 2.57 ? ? ? 0.090 ? ? 0.681 5.50 ? 1866 100.00 5 1 2.57 2.77 ? ? ? 0.063 ? ? 0.809 5.70 ? 1834 99.90 6 1 2.77 3.05 ? ? ? 0.048 ? ? 0.992 5.70 ? 1848 100.00 7 1 3.05 3.49 ? ? ? 0.036 ? ? 1.244 5.70 ? 1872 100.00 8 1 3.49 4.39 ? ? ? 0.036 ? ? 2.088 5.30 ? 1796 96.60 9 1 4.39 50.00 ? ? ? 0.024 ? ? 1.784 5.30 ? 1815 96.30 10 1 # _refine.entry_id 2QYZ _refine.ls_d_res_high 2.040 _refine.ls_d_res_low 19.700 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 92.090 _refine.ls_number_reflns_obs 9007 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'The Bijvoet differences were used for phasing. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_obs 0.194 _refine.ls_R_factor_R_work 0.191 _refine.ls_R_factor_R_free 0.259 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 435 _refine.B_iso_mean 54.382 _refine.aniso_B[1][1] 0.210 _refine.aniso_B[2][2] 0.210 _refine.aniso_B[3][3] -0.310 _refine.aniso_B[1][2] 0.100 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.pdbx_overall_ESU_R 0.212 _refine.pdbx_overall_ESU_R_Free 0.199 _refine.overall_SU_ML 0.242 _refine.overall_SU_B 22.616 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1044 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 1111 _refine_hist.d_res_high 2.040 _refine_hist.d_res_low 19.700 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1066 0.021 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1438 2.008 1.956 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 128 8.538 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 57 42.195 25.614 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 202 19.268 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5 25.263 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 155 0.132 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 809 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 412 0.243 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 718 0.322 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 57 0.157 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 62 0.222 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 9 0.165 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 657 1.807 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1031 5.987 20.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 476 11.645 20.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 406 5.213 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.040 _refine_ls_shell.d_res_low 2.095 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 45.550 _refine_ls_shell.number_reflns_R_work 291 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.326 _refine_ls_shell.R_factor_R_free 0.532 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 312 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2QYZ _struct.title 'Crystal structure of the uncharacterized protein CTC02137 from Clostridium tetani E88' _struct.pdbx_descriptor 'Uncharacterized protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2QYZ _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;structural genomics, Clostridium tetani E88, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'disulfide linked dimer is formed around the crystallographic two-fold axis. Asymmetric unit contains one subunit.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 34 ? GLN A 45 ? ASN A 34 GLN A 45 1 ? 12 HELX_P HELX_P2 2 ASP A 46 ? TYR A 48 ? ASP A 46 TYR A 48 5 ? 3 HELX_P HELX_P3 3 ASP A 88 ? ALA A 91 ? ASP A 88 ALA A 91 5 ? 4 HELX_P HELX_P4 4 ASN A 125 ? LEU A 129 ? ASN A 125 LEU A 129 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 92 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 92 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 92 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 92 _struct_conn.ptnr2_symmetry 5_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.592 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 99 A . ? LYS 99 A GLY 100 A ? GLY 100 A 1 -17.67 2 SER 104 A . ? SER 104 A PHE 105 A ? PHE 105 A 1 -8.95 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 18 ? VAL A 20 ? MET A 18 VAL A 20 A 2 PHE A 9 ? ASP A 13 ? PHE A 9 ASP A 13 A 3 TYR A 50 ? LYS A 59 ? TYR A 50 LYS A 59 A 4 GLU A 65 ? TYR A 67 ? GLU A 65 TYR A 67 B 1 CYS A 92 ? LYS A 99 ? CYS A 92 LYS A 99 B 2 LEU A 81 ? GLN A 87 ? LEU A 81 GLN A 87 B 3 ASP A 70 ? LYS A 74 ? ASP A 70 LYS A 74 B 4 CYS A 116 ? ASN A 121 ? CYS A 116 ASN A 121 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O MET A 18 ? O MET A 18 N ASP A 13 ? N ASP A 13 A 2 3 N ARG A 10 ? N ARG A 10 O MET A 53 ? O MET A 53 A 3 4 N LEU A 58 ? N LEU A 58 O ILE A 66 ? O ILE A 66 B 1 2 O ILE A 98 ? O ILE A 98 N LEU A 81 ? N LEU A 81 B 2 3 O ILE A 84 ? O ILE A 84 N ASP A 70 ? N ASP A 70 B 3 4 N ILE A 71 ? N ILE A 71 O ILE A 119 ? O ILE A 119 # _atom_sites.entry_id 2QYZ _atom_sites.fract_transf_matrix[1][1] 0.024563 _atom_sites.fract_transf_matrix[1][2] 0.014182 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028363 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006379 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 LEU 3 3 ? ? ? A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 TRP 12 12 12 TRP TRP A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 MET 18 18 18 MET MET A . n A 1 19 MET 19 19 19 MET MET A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 HIS 28 28 28 HIS HIS A . n A 1 29 ILE 29 29 29 ILE ILE A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 MET 53 53 53 MET MET A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 GLY 57 57 57 GLY GLY A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 CYS 92 92 92 CYS CYS A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 LYS 99 99 99 LYS LYS A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 CYS 116 116 116 CYS CYS A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 TYR 123 123 123 TYR TYR A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 ASN 125 125 125 ASN ASN A . n A 1 126 PRO 126 126 126 PRO PRO A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 GLU 131 131 ? ? ? A . n A 1 132 GLU 132 132 ? ? ? A . n A 1 133 GLY 133 133 ? ? ? A . n A 1 134 HIS 134 134 ? ? ? A . n A 1 135 HIS 135 135 ? ? ? A . n A 1 136 HIS 136 136 ? ? ? A . n A 1 137 HIS 137 137 ? ? ? A . n A 1 138 HIS 138 138 ? ? ? A . n A 1 139 HIS 139 139 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'New York SGX Research Center for Structural Genomics' _pdbx_SG_project.initial_of_center NYSGXRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 140 1 HOH HOH A . B 2 HOH 2 141 3 HOH HOH A . B 2 HOH 3 142 4 HOH HOH A . B 2 HOH 4 143 5 HOH HOH A . B 2 HOH 5 144 6 HOH HOH A . B 2 HOH 6 145 7 HOH HOH A . B 2 HOH 7 146 8 HOH HOH A . B 2 HOH 8 147 9 HOH HOH A . B 2 HOH 9 148 10 HOH HOH A . B 2 HOH 10 149 11 HOH HOH A . B 2 HOH 11 150 13 HOH HOH A . B 2 HOH 12 151 14 HOH HOH A . B 2 HOH 13 152 15 HOH HOH A . B 2 HOH 14 153 16 HOH HOH A . B 2 HOH 15 154 20 HOH HOH A . B 2 HOH 16 155 22 HOH HOH A . B 2 HOH 17 156 24 HOH HOH A . B 2 HOH 18 157 26 HOH HOH A . B 2 HOH 19 158 27 HOH HOH A . B 2 HOH 20 159 28 HOH HOH A . B 2 HOH 21 160 29 HOH HOH A . B 2 HOH 22 161 30 HOH HOH A . B 2 HOH 23 162 31 HOH HOH A . B 2 HOH 24 163 32 HOH HOH A . B 2 HOH 25 164 33 HOH HOH A . B 2 HOH 26 165 35 HOH HOH A . B 2 HOH 27 166 36 HOH HOH A . B 2 HOH 28 167 38 HOH HOH A . B 2 HOH 29 168 39 HOH HOH A . B 2 HOH 30 169 40 HOH HOH A . B 2 HOH 31 170 41 HOH HOH A . B 2 HOH 32 171 44 HOH HOH A . B 2 HOH 33 172 47 HOH HOH A . B 2 HOH 34 173 49 HOH HOH A . B 2 HOH 35 174 53 HOH HOH A . B 2 HOH 36 175 55 HOH HOH A . B 2 HOH 37 176 57 HOH HOH A . B 2 HOH 38 177 58 HOH HOH A . B 2 HOH 39 178 61 HOH HOH A . B 2 HOH 40 179 67 HOH HOH A . B 2 HOH 41 180 68 HOH HOH A . B 2 HOH 42 181 70 HOH HOH A . B 2 HOH 43 182 71 HOH HOH A . B 2 HOH 44 183 72 HOH HOH A . B 2 HOH 45 184 73 HOH HOH A . B 2 HOH 46 185 74 HOH HOH A . B 2 HOH 47 186 76 HOH HOH A . B 2 HOH 48 187 78 HOH HOH A . B 2 HOH 49 188 80 HOH HOH A . B 2 HOH 50 189 81 HOH HOH A . B 2 HOH 51 190 82 HOH HOH A . B 2 HOH 52 191 83 HOH HOH A . B 2 HOH 53 192 85 HOH HOH A . B 2 HOH 54 193 86 HOH HOH A . B 2 HOH 55 194 87 HOH HOH A . B 2 HOH 56 195 88 HOH HOH A . B 2 HOH 57 196 89 HOH HOH A . B 2 HOH 58 197 91 HOH HOH A . B 2 HOH 59 198 93 HOH HOH A . B 2 HOH 60 199 94 HOH HOH A . B 2 HOH 61 200 96 HOH HOH A . B 2 HOH 62 201 97 HOH HOH A . B 2 HOH 63 202 101 HOH HOH A . B 2 HOH 64 203 102 HOH HOH A . B 2 HOH 65 204 103 HOH HOH A . B 2 HOH 66 205 104 HOH HOH A . B 2 HOH 67 206 105 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_prop.biol_id 1 _pdbx_struct_assembly_prop.type 'ABSA (A^2)' _pdbx_struct_assembly_prop.value 4150 _pdbx_struct_assembly_prop.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 -x+y,y,-z+1/3 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 52.2510000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2018-11-14 5 'Structure model' 1 4 2021-02-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' audit_author 3 5 'Structure model' audit_author 4 5 'Structure model' citation_author 5 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_audit_author.identifier_ORCID' 2 5 'Structure model' '_audit_author.identifier_ORCID' 3 5 'Structure model' '_citation_author.identifier_ORCID' 4 5 'Structure model' '_struct_ref_seq_dif.details' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.040 _diffrn_reflns.pdbx_d_res_low 50.000 _diffrn_reflns.pdbx_number_obs 16582 _diffrn_reflns.pdbx_Rmerge_I_obs 0.035 _diffrn_reflns.pdbx_Rsym_value ? _diffrn_reflns.pdbx_chi_squared 1.14 _diffrn_reflns.av_sigmaI_over_netI 18.30 _diffrn_reflns.pdbx_redundancy 4.90 _diffrn_reflns.pdbx_percent_possible_obs 89.30 _diffrn_reflns.number 81550 _diffrn_reflns.pdbx_observed_criterion ? _diffrn_reflns.limit_h_max ? _diffrn_reflns.limit_h_min ? _diffrn_reflns.limit_k_max ? _diffrn_reflns.limit_k_min ? _diffrn_reflns.limit_l_max ? _diffrn_reflns.limit_l_min ? # loop_ _pdbx_diffrn_reflns_shell.diffrn_id _pdbx_diffrn_reflns_shell.d_res_high _pdbx_diffrn_reflns_shell.d_res_low _pdbx_diffrn_reflns_shell.number_obs _pdbx_diffrn_reflns_shell.rejects _pdbx_diffrn_reflns_shell.Rmerge_I_obs _pdbx_diffrn_reflns_shell.Rsym_value _pdbx_diffrn_reflns_shell.chi_squared _pdbx_diffrn_reflns_shell.redundancy _pdbx_diffrn_reflns_shell.percent_possible_obs 1 4.39 50.00 ? ? 0.024 ? 1.784 5.30 96.30 1 3.49 4.39 ? ? 0.036 ? 2.088 5.30 96.60 1 3.05 3.49 ? ? 0.036 ? 1.244 5.70 100.00 1 2.77 3.05 ? ? 0.048 ? 0.992 5.70 100.00 1 2.57 2.77 ? ? 0.063 ? 0.809 5.70 99.90 1 2.42 2.57 ? ? 0.090 ? 0.681 5.50 100.00 1 2.30 2.42 ? ? 0.109 ? 0.618 4.70 98.90 1 2.20 2.30 ? ? 0.196 ? 1.369 3.50 89.30 1 2.11 2.20 ? ? 0.172 ? 0.523 3.00 71.60 1 2.04 2.11 ? ? 0.183 ? 0.509 2.60 39.60 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 0.9503 _pdbx_refine_tls.origin_y 5.2605 _pdbx_refine_tls.origin_z 36.9146 _pdbx_refine_tls.T[1][1] -0.0044 _pdbx_refine_tls.T[2][2] -0.1403 _pdbx_refine_tls.T[3][3] -0.0676 _pdbx_refine_tls.T[1][2] -0.1084 _pdbx_refine_tls.T[1][3] 0.0072 _pdbx_refine_tls.T[2][3] -0.0111 _pdbx_refine_tls.L[1][1] 1.3446 _pdbx_refine_tls.L[2][2] 1.9553 _pdbx_refine_tls.L[3][3] 4.7512 _pdbx_refine_tls.L[1][2] -0.1380 _pdbx_refine_tls.L[1][3] -0.4823 _pdbx_refine_tls.L[2][3] -1.3127 _pdbx_refine_tls.S[1][1] 0.0854 _pdbx_refine_tls.S[2][2] -0.2359 _pdbx_refine_tls.S[3][3] 0.1505 _pdbx_refine_tls.S[1][2] -0.2281 _pdbx_refine_tls.S[1][3] 0.0447 _pdbx_refine_tls.S[2][3] 0.0842 _pdbx_refine_tls.S[2][1] 0.1964 _pdbx_refine_tls.S[3][1] 0.0135 _pdbx_refine_tls.S[3][2] 0.1044 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 4 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 4 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 130 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 130 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.000 'July 2, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 CBASS . ? ? ? ? 'data collection' ? ? ? 5 SHELXS . ? ? ? ? phasing ? ? ? 6 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON BURIED SURFACE AREA. THE DIMER IS DISULFIDE-LINKED THROUGH CYS-92. ; # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 60 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 60 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 60 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.71 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.41 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 22 ? ? -124.07 -93.09 2 1 ASN A 32 ? ? -105.93 55.94 3 1 SER A 75 ? ? -61.51 61.75 4 1 ARG A 77 ? ? 81.18 5.21 5 1 ASP A 101 ? ? -52.86 107.92 6 1 SER A 104 ? ? -77.01 -151.98 7 1 PRO A 106 ? ? -33.84 -176.35 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A LEU 3 ? A LEU 3 4 1 Y 1 A GLU 131 ? A GLU 131 5 1 Y 1 A GLU 132 ? A GLU 132 6 1 Y 1 A GLY 133 ? A GLY 133 7 1 Y 1 A HIS 134 ? A HIS 134 8 1 Y 1 A HIS 135 ? A HIS 135 9 1 Y 1 A HIS 136 ? A HIS 136 10 1 Y 1 A HIS 137 ? A HIS 137 11 1 Y 1 A HIS 138 ? A HIS 138 12 1 Y 1 A HIS 139 ? A HIS 139 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #