HEADER TRANSPORT PROTEIN 22-AUG-07 2R19 TITLE CRYSTAL STRUCTURE OF THE PERIPLASMIC LIPOPOLYSACCHARIDE TRANSPORT TITLE 2 PROTEIN LPTA (YHBN), ORTHORHOMBIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN YHBN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PERIPLASMIC PROCESSED FORM: RESIDUES 27-185; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YHBN, B3200, JW3167; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS BETA-JELLYROLL, MAINLY BETA, BETA-TACO, STRUCTURAL GENOMICS, KEYWDS 2 MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS INITIATIVE, BSGI, KEYWDS 3 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.D.L.SUITS,A.POLISSI,Z.JIA,MONTREAL-KINGSTON BACTERIAL STRUCTURAL AUTHOR 2 GENOMICS INITIATIVE (BSGI) REVDAT 6 21-FEB-24 2R19 1 REMARK REVDAT 5 25-OCT-17 2R19 1 REMARK REVDAT 4 13-JUL-11 2R19 1 VERSN REVDAT 3 24-FEB-09 2R19 1 VERSN REVDAT 2 01-JUL-08 2R19 1 JRNL REVDAT 1 29-APR-08 2R19 0 JRNL AUTH M.D.SUITS,P.SPERANDEO,G.DEHO,A.POLISSI,Z.JIA JRNL TITL NOVEL STRUCTURE OF THE CONSERVED GRAM-NEGATIVE JRNL TITL 2 LIPOPOLYSACCHARIDE TRANSPORT PROTEIN A AND MUTAGENESIS JRNL TITL 3 ANALYSIS. JRNL REF J.MOL.BIOL. V. 380 476 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18534617 JRNL DOI 10.1016/J.JMB.2008.04.045 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 56.8 REMARK 3 NUMBER OF REFLECTIONS : 12567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 691 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 2.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.1280 REMARK 3 BIN FREE R VALUE SET COUNT : 1 REMARK 3 BIN FREE R VALUE : 0.1820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.376 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.312 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.615 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2079 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2833 ; 1.611 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 5.566 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;43.814 ;27.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 319 ;17.140 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;25.756 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1590 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 949 ; 0.256 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1417 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 182 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.267 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R19 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-06; 16-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X25; X29A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10000; 0.97960 REMARK 200 MONOCHROMATOR : SI(111); SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13258 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.73900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, GLYCEROL, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.95500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.95500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.86500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 58.41000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 74.81000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 27 REMARK 465 GLY A 79 REMARK 465 GLU A 80 REMARK 465 VAL A 165 REMARK 465 PRO A 166 REMARK 465 SER A 167 REMARK 465 GLN A 168 REMARK 465 LEU A 169 REMARK 465 GLN A 170 REMARK 465 ASP A 171 REMARK 465 LYS A 172 REMARK 465 ASN A 173 REMARK 465 ASN A 174 REMARK 465 LYS A 175 REMARK 465 GLY A 176 REMARK 465 GLN A 177 REMARK 465 THR A 178 REMARK 465 PRO A 179 REMARK 465 ALA A 180 REMARK 465 GLN A 181 REMARK 465 LYS A 182 REMARK 465 LYS A 183 REMARK 465 GLY A 184 REMARK 465 ASN A 185 REMARK 465 GLY B 79 REMARK 465 GLU B 80 REMARK 465 GLN B 81 REMARK 465 GLY B 82 REMARK 465 LYS B 172 REMARK 465 ASN B 173 REMARK 465 ASN B 174 REMARK 465 LYS B 175 REMARK 465 GLY B 176 REMARK 465 GLN B 177 REMARK 465 THR B 178 REMARK 465 PRO B 179 REMARK 465 ALA B 180 REMARK 465 GLN B 181 REMARK 465 LYS B 182 REMARK 465 LYS B 183 REMARK 465 GLY B 184 REMARK 465 ASN B 185 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 GLN A 111 CD OE1 NE2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS A 146 CE NZ REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 ARG A 159 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 48 CG CD OE1 NE2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 LYS B 137 CG CD CE NZ REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 ASP B 171 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 187 O HOH A 239 2.14 REMARK 500 O HOH A 211 O HOH A 233 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 50 59.89 34.71 REMARK 500 PRO A 77 96.00 -54.02 REMARK 500 ALA A 93 115.16 34.00 REMARK 500 ASP A 119 61.78 32.49 REMARK 500 VAL A 132 -107.75 57.82 REMARK 500 ASP A 155 -129.88 -66.29 REMARK 500 LYS A 156 2.75 -68.59 REMARK 500 VAL B 28 109.59 -59.97 REMARK 500 ASP B 41 -71.70 -77.58 REMARK 500 ASN B 50 62.59 70.02 REMARK 500 LYS B 146 37.35 -89.90 REMARK 500 GLU B 147 -14.53 -150.56 REMARK 500 LYS B 156 126.27 -38.75 REMARK 500 SER B 167 70.42 -68.86 REMARK 500 GLN B 168 -11.33 172.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: YHBN_ECOLI RELATED DB: TARGETDB REMARK 900 RELATED ID: 2R1A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PERIPLASMIC LIPOPOLYSACCHARIDE TRANSPORT REMARK 900 PROTEIN LPTA (YHBN), TRIGONAL FORM, EIGHT MOLECULES IN ASYMMETRIC REMARK 900 UNIT DBREF 2R19 A 27 185 UNP P0ADV1 YHBN_ECOLI 27 185 DBREF 2R19 B 27 176 UNP P0ADV1 YHBN_ECOLI 27 185 SEQRES 1 A 159 ALA VAL THR GLY ASP THR ASP GLN PRO ILE HIS ILE GLU SEQRES 2 A 159 SER ASP GLN GLN SER LEU ASP MET GLN GLY ASN VAL VAL SEQRES 3 A 159 THR PHE THR GLY ASN VAL ILE VAL THR GLN GLY THR ILE SEQRES 4 A 159 LYS ILE ASN ALA ASP LYS VAL VAL VAL THR ARG PRO GLY SEQRES 5 A 159 GLY GLU GLN GLY LYS GLU VAL ILE ASP GLY TYR GLY LYS SEQRES 6 A 159 PRO ALA THR PHE TYR GLN MET GLN ASP ASN GLY LYS PRO SEQRES 7 A 159 VAL GLU GLY HIS ALA SER GLN MET HIS TYR GLU LEU ALA SEQRES 8 A 159 LYS ASP PHE VAL VAL LEU THR GLY ASN ALA TYR LEU GLN SEQRES 9 A 159 GLN VAL ASP SER ASN ILE LYS GLY ASP LYS ILE THR TYR SEQRES 10 A 159 LEU VAL LYS GLU GLN LYS MET GLN ALA PHE SER ASP LYS SEQRES 11 A 159 GLY LYS ARG VAL THR THR VAL LEU VAL PRO SER GLN LEU SEQRES 12 A 159 GLN ASP LYS ASN ASN LYS GLY GLN THR PRO ALA GLN LYS SEQRES 13 A 159 LYS GLY ASN SEQRES 1 B 159 ALA VAL THR GLY ASP THR ASP GLN PRO ILE HIS ILE GLU SEQRES 2 B 159 SER ASP GLN GLN SER LEU ASP MET GLN GLY ASN VAL VAL SEQRES 3 B 159 THR PHE THR GLY ASN VAL ILE VAL THR GLN GLY THR ILE SEQRES 4 B 159 LYS ILE ASN ALA ASP LYS VAL VAL VAL THR ARG PRO GLY SEQRES 5 B 159 GLY GLU GLN GLY LYS GLU VAL ILE ASP GLY TYR GLY LYS SEQRES 6 B 159 PRO ALA THR PHE TYR GLN MET GLN ASP ASN GLY LYS PRO SEQRES 7 B 159 VAL GLU GLY HIS ALA SER GLN MET HIS TYR GLU LEU ALA SEQRES 8 B 159 LYS ASP PHE VAL VAL LEU THR GLY ASN ALA TYR LEU GLN SEQRES 9 B 159 GLN VAL ASP SER ASN ILE LYS GLY ASP LYS ILE THR TYR SEQRES 10 B 159 LEU VAL LYS GLU GLN LYS MET GLN ALA PHE SER ASP LYS SEQRES 11 B 159 GLY LYS ARG VAL THR THR VAL LEU VAL PRO SER GLN LEU SEQRES 12 B 159 GLN ASP LYS ASN ASN LYS GLY GLN THR PRO ALA GLN LYS SEQRES 13 B 159 LYS GLY ASN FORMUL 3 HOH *304(H2 O) HELIX 1 1 VAL A 28 GLN A 34 5 7 HELIX 2 2 GLY B 30 GLN B 34 5 5 HELIX 3 3 LYS B 146 GLN B 148 5 3 SHEET 1 A17 GLN B 42 ASP B 46 0 SHEET 2 A17 VAL B 51 GLN B 62 -1 O THR B 53 N SER B 44 SHEET 3 A17 ILE B 65 THR B 75 -1 O ILE B 67 N VAL B 60 SHEET 4 A17 VAL B 85 MET B 98 -1 O TYR B 89 N ASP B 70 SHEET 5 A17 PRO B 104 GLU B 115 -1 O TYR B 114 N ILE B 86 SHEET 6 A17 PHE B 120 GLN B 131 -1 O VAL B 122 N HIS B 113 SHEET 7 A17 SER B 134 LEU B 144 -1 O ILE B 141 N LEU B 123 SHEET 8 A17 LYS B 149 PHE B 153 -1 O PHE B 153 N LYS B 140 SHEET 9 A17 GLN A 42 ASP A 46 -1 N LEU A 45 O MET B 150 SHEET 10 A17 VAL A 51 GLN A 62 -1 O THR A 53 N SER A 44 SHEET 11 A17 ILE A 65 THR A 75 -1 O VAL A 72 N PHE A 54 SHEET 12 A17 VAL A 85 TYR A 89 -1 O TYR A 89 N LYS A 71 SHEET 13 A17 THR A 94 GLN A 97 0 SHEET 14 A17 VAL A 105 HIS A 108 -1 O GLY A 107 N PHE A 95 SHEET 15 A17 PHE A 120 GLN A 131 -1 O GLN A 130 N GLU A 106 SHEET 16 A17 SER A 134 LEU A 144 -1 O ASP A 139 N GLY A 125 SHEET 17 A17 LYS A 149 PHE A 153 -1 O GLN A 151 N THR A 142 SHEET 1 B16 HIS B 37 GLU B 39 0 SHEET 2 B16 VAL B 51 GLN B 62 -1 O THR B 61 N HIS B 37 SHEET 3 B16 ILE B 65 THR B 75 -1 O ILE B 67 N VAL B 60 SHEET 4 B16 VAL B 85 MET B 98 -1 O TYR B 89 N ASP B 70 SHEET 5 B16 PRO B 104 GLU B 115 -1 O TYR B 114 N ILE B 86 SHEET 6 B16 PHE B 120 GLN B 131 -1 O VAL B 122 N HIS B 113 SHEET 7 B16 SER B 134 LEU B 144 -1 O ILE B 141 N LEU B 123 SHEET 8 B16 VAL B 160 LEU B 164 -1 O THR B 161 N LYS B 137 SHEET 9 B16 ILE A 36 SER A 40 -1 N ILE A 38 O THR B 162 SHEET 10 B16 VAL A 51 GLN A 62 -1 O THR A 61 N HIS A 37 SHEET 11 B16 ILE A 65 THR A 75 -1 O VAL A 72 N PHE A 54 SHEET 12 B16 VAL A 85 TYR A 89 -1 O TYR A 89 N LYS A 71 SHEET 13 B16 GLN A 111 GLU A 115 -1 O TYR A 114 N ILE A 86 SHEET 14 B16 PHE A 120 GLN A 131 -1 O PHE A 120 N GLU A 115 SHEET 15 B16 SER A 134 LEU A 144 -1 O ASP A 139 N GLY A 125 SHEET 16 B16 LYS A 149 PHE A 153 -1 O GLN A 151 N THR A 142 SHEET 1 C 8 PHE B 120 GLN B 131 0 SHEET 2 C 8 SER B 134 LEU B 144 -1 O ILE B 141 N LEU B 123 SHEET 3 C 8 LYS B 149 PHE B 153 -1 O PHE B 153 N LYS B 140 SHEET 4 C 8 GLN A 42 ASP A 46 -1 N LEU A 45 O MET B 150 SHEET 5 C 8 VAL A 51 GLN A 62 -1 O THR A 53 N SER A 44 SHEET 6 C 8 ILE A 65 THR A 75 -1 O VAL A 72 N PHE A 54 SHEET 7 C 8 VAL A 85 TYR A 89 -1 O TYR A 89 N LYS A 71 SHEET 8 C 8 GLN A 111 GLU A 115 -1 O TYR A 114 N ILE A 86 SHEET 1 D 7 PHE B 120 GLN B 131 0 SHEET 2 D 7 SER B 134 LEU B 144 -1 O ILE B 141 N LEU B 123 SHEET 3 D 7 VAL B 160 LEU B 164 -1 O THR B 161 N LYS B 137 SHEET 4 D 7 ILE A 36 SER A 40 -1 N ILE A 38 O THR B 162 SHEET 5 D 7 VAL A 51 GLN A 62 -1 O THR A 61 N HIS A 37 SHEET 6 D 7 ILE A 65 THR A 75 -1 O VAL A 72 N PHE A 54 SHEET 7 D 7 THR A 94 GLN A 97 -1 O TYR A 96 N LYS A 66 CISPEP 1 LYS B 91 PRO B 92 0 -1.36 CRYST1 47.910 58.410 149.620 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020872 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006684 0.00000