HEADER VIRAL PROTEIN/IMMUNE SYSTEM 24-AUG-07 2R29 TITLE NEUTRALIZATION OF DENGUE VIRUS BY A SEROTYPE CROSS-REACTIVE ANTIBODY TITLE 2 ELUCIDATED BY CRYOELECTRON MICROSCOPY AND X-RAY CRYSTALLOGRAPHY COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 478-574; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEAVY CHAIN OF FAB 1A1D-2; COMPND 8 CHAIN: H; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LIGHT CHAIN OF FAB 1A1D-2; COMPND 11 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 2 THAILAND/16681/84; SOURCE 3 ORGANISM_TAXID: 31634; SOURCE 4 STRAIN: 16681; SOURCE 5 GENE: E PROTEIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 OTHER_DETAILS: MOUSE B-CELL, HYBRIDOMA; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 19 ORGANISM_TAXID: 10090; SOURCE 20 OTHER_DETAILS: MOUSE B-CELL, HYBRIDOMA KEYWDS FAB-ANTIGEN COMPLEX, ATP-BINDING, CAPSID PROTEIN, CLEAVAGE ON PAIR OF KEYWDS 2 BASIC RESIDUES, ENDOPLASMIC RETICULUM, ENVELOPE PROTEIN, KEYWDS 3 GLYCOPROTEIN, HELICASE, HYDROLASE, MEMBRANE, METAL-BINDING, KEYWDS 4 MULTIFUNCTIONAL ENZYME, NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, KEYWDS 5 NUCLEUS, PHOSPHORYLATION, PROTEASE, RIBONUCLEOPROTEIN, RNA KEYWDS 6 REPLICATION, RNA-BINDING, RNA-DIRECTED RNA POLYMERASE, SECRETED, KEYWDS 7 SERINE PROTEASE, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 8 TRANSFERASE, TRANSMEMBRANE, VIRAL NUCLEOPROTEIN, VIRION, VIRAL KEYWDS 9 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.M.LOK,V.K.KOSTYUCHENKO,G.E.NYBAKKEN,H.A.HOLDAWAY,A.J.BATTISTI, AUTHOR 2 S.SUKUPOLVI-PETTY,D.SEDLAK,D.H.FREMONT,P.R.CHIPMAN,J.T.ROEHRIG, AUTHOR 3 M.S.DIAMOND,R.J.KUHN,M.G.ROSSMANN REVDAT 6 20-NOV-24 2R29 1 REMARK REVDAT 5 24-JAN-18 2R29 1 AUTHOR REVDAT 4 25-OCT-17 2R29 1 REMARK REVDAT 3 24-FEB-09 2R29 1 VERSN REVDAT 2 25-MAR-08 2R29 1 JRNL REVDAT 1 25-DEC-07 2R29 0 JRNL AUTH S.M.LOK,V.KOSTYUCHENKO,G.E.NYBAKKEN,H.A.HOLDAWAY, JRNL AUTH 2 A.J.BATTISTI,S.SUKUPOLVI-PETTY,D.SEDLAK,D.H.FREMONT, JRNL AUTH 3 P.R.CHIPMAN,J.T.ROEHRIG,M.S.DIAMOND,R.J.KUHN,M.G.ROSSMANN JRNL TITL BINDING OF A NEUTRALIZING ANTIBODY TO DENGUE VIRUS ALTERS JRNL TITL 2 THE ARRANGEMENT OF SURFACE GLYCOPROTEINS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 312 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18264114 JRNL DOI 10.1038/NSMB.1382 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.321 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1087 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2R29 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15759 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 39.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13% PEG 2000, PH 5.4, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 84.06000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 84.06000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU L 127 REMARK 465 GLN L 128 REMARK 465 GLY L 156 REMARK 465 SER L 157 REMARK 465 GLU L 158 REMARK 465 LYS L 173 REMARK 465 ASP L 174 REMARK 465 SER L 175 REMARK 465 HIS L 201A REMARK 465 LYS L 201B REMARK 465 THR L 201C REMARK 465 SER L 201D REMARK 465 THR L 201E REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR H 33 O ARG H 98 2.09 REMARK 500 O ASP H 73 O SER H 76 2.13 REMARK 500 NH2 ARG A 345 O HOH A 452 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 343 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 HIS A 346 N - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 ILE A 352 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 PRO A 356 C - N - CA ANGL. DEV. = 11.6 DEGREES REMARK 500 PRO A 356 C - N - CD ANGL. DEV. = -14.0 DEGREES REMARK 500 PRO H 170 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 PRO H 215 C - N - CA ANGL. DEV. = 14.5 DEGREES REMARK 500 LEU L 4 CA - CB - CG ANGL. DEV. = -16.9 DEGREES REMARK 500 PRO L 8 C - N - CA ANGL. DEV. = -14.6 DEGREES REMARK 500 PHE L 66 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 PRO L 99 C - N - CA ANGL. DEV. = -15.8 DEGREES REMARK 500 ALA L 115 N - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 299 -98.56 -72.72 REMARK 500 LYS A 310 -142.06 -149.48 REMARK 500 ILE A 312 75.61 -110.53 REMARK 500 ALA A 313 160.13 -48.22 REMARK 500 ASP A 329 -78.49 -32.96 REMARK 500 CYS A 333 -167.56 -64.07 REMARK 500 GLU A 338 64.92 -153.07 REMARK 500 GLU A 343 -162.85 -101.85 REMARK 500 LEU A 348 95.18 -179.41 REMARK 500 VAL A 354 22.41 -68.85 REMARK 500 PRO A 356 159.92 -38.12 REMARK 500 PHE A 373 36.54 -63.59 REMARK 500 ASP A 375 121.25 -36.25 REMARK 500 VAL A 382 173.76 -46.76 REMARK 500 GLN H 3 150.85 158.78 REMARK 500 ALA H 9 104.79 177.97 REMARK 500 PHE H 27 143.09 -171.30 REMARK 500 HIS H 35 -159.71 -115.03 REMARK 500 TRP H 36 108.91 -161.04 REMARK 500 PRO H 41 -79.36 -7.27 REMARK 500 GLN H 43 81.50 -69.75 REMARK 500 LEU H 45 146.05 -19.84 REMARK 500 ALA H 54 -78.48 -65.63 REMARK 500 PRO H 62 -63.76 -14.85 REMARK 500 LYS H 63 14.52 -60.51 REMARK 500 LYS H 67 -80.75 -83.64 REMARK 500 ALA H 68 178.98 -58.22 REMARK 500 THR H 69 103.15 -177.48 REMARK 500 TYR H 80 -158.91 -95.13 REMARK 500 LEU H 81 95.75 -170.08 REMARK 500 SER H 88 -36.30 -38.06 REMARK 500 ASP H 90 45.88 -68.58 REMARK 500 ALA H 92 -174.79 -171.03 REMARK 500 ALA H 97 -164.68 -119.46 REMARK 500 ARG H 98 -64.46 -122.78 REMARK 500 ASP H 99 -164.87 -57.15 REMARK 500 GLN H 108 89.53 -51.37 REMARK 500 ALA H 131 78.01 -64.95 REMARK 500 PHE H 149 -78.84 -95.42 REMARK 500 SER H 161 -14.18 -146.82 REMARK 500 LEU H 162 -156.47 -126.55 REMARK 500 SER H 163 81.32 -64.72 REMARK 500 PRO H 170 157.50 -41.06 REMARK 500 SER H 175 -85.40 -112.56 REMARK 500 ASP H 176 17.15 -143.38 REMARK 500 TYR H 178 163.96 -41.37 REMARK 500 SER H 182 -166.47 -102.13 REMARK 500 SER H 183 126.22 171.36 REMARK 500 VAL H 186 -177.94 -64.56 REMARK 500 SER H 189 0.98 -67.79 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR L 144 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2R29 A 298 394 UNP P14340 POLY_DEN2N 578 674 DBREF 2R29 H 1 216 PDB 2R29 2R29 1 216 DBREF 2R29 L 1 213 PDB 2R29 2R29 1 213 SEQRES 1 A 97 SER TYR SER MET CYS THR GLY LYS PHE LYS VAL VAL LYS SEQRES 2 A 97 GLU ILE ALA GLU THR GLN HIS GLY THR ILE VAL ILE ARG SEQRES 3 A 97 VAL GLN TYR GLU GLY ASP GLY SER PRO CYS LYS ILE PRO SEQRES 4 A 97 PHE GLU ILE MET ASP LEU GLU LYS ARG HIS VAL LEU GLY SEQRES 5 A 97 ARG LEU ILE THR VAL ASN PRO ILE VAL THR GLU LYS ASP SEQRES 6 A 97 SER PRO VAL ASN ILE GLU ALA GLU PRO PRO PHE GLY ASP SEQRES 7 A 97 SER TYR ILE ILE ILE GLY VAL GLU PRO GLY GLN LEU LYS SEQRES 8 A 97 LEU ASN TRP PHE LYS LYS SEQRES 1 H 216 GLU VAL GLN LEU GLN GLN SER GLY ALA GLU LEU VAL LYS SEQRES 2 H 216 PRO GLY ALA SER VAL LYS LEU SER CYS THR ALA SER GLY SEQRES 3 H 216 PHE ASN ILE LYS ASP THR TYR MET HIS TRP VAL LYS GLN SEQRES 4 H 216 ARG PRO GLU GLN GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 H 216 PRO ALA ASN GLY TYR SER LYS TYR ASP PRO LYS PHE GLN SEQRES 6 H 216 GLY LYS ALA THR ILE THR ALA ASP THR SER SER ASN ALA SEQRES 7 H 216 ALA TYR LEU GLN LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 H 216 ALA VAL TYR PHE CYS ALA ARG ASP TYR GLU GLY PHE ALA SEQRES 9 H 216 TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SEQRES 10 H 216 LYS THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SEQRES 11 H 216 ALA ALA ALA ALA THR SER SER SER VAL THR LEU GLY CYS SEQRES 12 H 216 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR LEU THR SEQRES 13 H 216 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 H 216 PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SEQRES 15 H 216 SER VAL THR VAL THR SER SER THR TRP PRO SER GLN THR SEQRES 16 H 216 ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 H 216 VAL ASP LYS LYS ILE GLU PRO ARG SEQRES 1 L 217 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 L 217 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 L 217 GLU SER VAL VAL ARG TYR GLY ASN SER PHE MET HIS TRP SEQRES 4 L 217 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 L 217 TYR ARG ALA SER SER LEU GLU SER GLY ILE PRO THR ARG SEQRES 6 L 217 PHE SER GLY SER GLY SER ARG THR ASP PHE THR LEU THR SEQRES 7 L 217 ILE ASN PRO VAL GLU ALA ASP ASP VAL ALA THR TYR TYR SEQRES 8 L 217 CYS GLN GLN THR ASN VAL ASP PRO TRP ALA PHE GLY GLY SEQRES 9 L 217 GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO SEQRES 10 L 217 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 L 217 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 L 217 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 L 217 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 L 217 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 L 217 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 L 217 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 L 217 ILE VAL LYS SER PHE ASN ARG ASN GLU FORMUL 4 HOH *254(H2 O) HELIX 1 1 PRO H 62 GLN H 65 5 4 HELIX 2 2 PRO H 203 SER H 206 5 4 SHEET 1 A 3 LYS A 305 GLU A 314 0 SHEET 2 A 3 ILE A 320 GLU A 327 -1 O GLN A 325 N LYS A 307 SHEET 3 A 3 VAL A 365 ASN A 366 -1 O VAL A 365 N VAL A 324 SHEET 1 B 2 ARG A 350 LEU A 351 0 SHEET 2 B 2 ALA A 369 GLU A 370 -1 O GLU A 370 N ARG A 350 SHEET 1 C 6 LEU H 11 VAL H 12 0 SHEET 2 C 6 THR H 110 VAL H 114 1 O THR H 113 N VAL H 12 SHEET 3 C 6 ALA H 92 PHE H 95 -1 N ALA H 92 O VAL H 112 SHEET 4 C 6 MET H 34 GLN H 39 -1 N VAL H 37 O PHE H 95 SHEET 5 C 6 GLU H 46 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 C 6 LYS H 59 TYR H 60 -1 O LYS H 59 N ARG H 50 SHEET 1 D 2 VAL H 18 THR H 23 0 SHEET 2 D 2 ALA H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 1 E 3 VAL H 124 LEU H 127 0 SHEET 2 E 3 GLY H 142 TYR H 148 -1 O LEU H 144 N TYR H 125 SHEET 3 E 3 TYR H 178 SER H 181 -1 O LEU H 180 N VAL H 145 SHEET 1 F 3 THR H 154 THR H 156 0 SHEET 2 F 3 THR H 197 HIS H 202 -1 O ASN H 199 N THR H 156 SHEET 3 F 3 THR H 207 LYS H 212 -1 O VAL H 209 N VAL H 200 SHEET 1 G 2 ALA L 12 VAL L 13 0 SHEET 2 G 2 GLU L 109 ILE L 110 1 O GLU L 109 N VAL L 13 SHEET 1 H 3 ALA L 19 ILE L 21 0 SHEET 2 H 3 PHE L 75 ILE L 79 -1 O ILE L 79 N ALA L 19 SHEET 3 H 3 SER L 67 GLY L 70 -1 N SER L 67 O THR L 78 SHEET 1 I 3 MET L 37 GLN L 42 0 SHEET 2 I 3 THR L 89 GLN L 94 -1 O GLN L 93 N HIS L 38 SHEET 3 I 3 THR L 106 LYS L 107 -1 O THR L 106 N TYR L 90 SHEET 1 J 3 VAL L 136 VAL L 137 0 SHEET 2 J 3 MET L 179 LEU L 183 -1 O LEU L 183 N VAL L 136 SHEET 3 J 3 VAL L 163 TRP L 167 -1 N SER L 166 O SER L 180 SHEET 1 K 2 SER L 195 ALA L 200 0 SHEET 2 K 2 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 200 SSBOND 1 CYS A 302 CYS A 333 1555 1555 2.07 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 3 CYS H 143 CYS H 198 1555 1555 2.03 SSBOND 4 CYS L 23 CYS L 92 1555 1555 2.02 SSBOND 5 CYS L 138 CYS L 198 1555 1555 2.03 CRYST1 168.120 58.660 78.190 90.00 114.41 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005948 0.000000 0.002699 0.00000 SCALE2 0.000000 0.017047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014045 0.00000