HEADER CHAPERONE 25-AUG-07 2R2J TITLE CRYSTAL STRUCTURE OF HUMAN ERP44 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN DOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDOPLASMIC RETICULUM RESIDENT PROTEIN ERP44; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: TXNDC4, ERP44, KIAA0573; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS THIOREDOXIN, CRFS MOTIF, CHAPERONE, ENDOPLASMIC RETICULUM, STRESS KEYWDS 2 RESPONSE EXPDTA X-RAY DIFFRACTION AUTHOR L.K.WANG,S.J.LI,F.SUN,C.C.WANG REVDAT 3 13-JUL-11 2R2J 1 VERSN REVDAT 2 24-FEB-09 2R2J 1 VERSN REVDAT 1 08-JUL-08 2R2J 0 JRNL AUTH L.K.WANG,L.WANG,S.VAVASSORI,S.J.LI,H.KE,T.ANELLI,M.DEGANO, JRNL AUTH 2 R.RONZONI,R.SITIA,F.SUN,C.C.WANG JRNL TITL CRYSTAL STRUCTURE OF HUMAN ERP44 SHOWS A DYNAMIC FUNCTIONAL JRNL TITL 2 MODULATION BY ITS CARBOXY-TERMINAL TAIL. JRNL REF EMBO REP. 2008 JRNL REFN ESSN 1469-3178 JRNL PMID 18552768 JRNL DOI 10.1038/EMBOR.2008.88 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 14916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 783 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 79.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.511 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.033 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2778 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3747 ; 1.946 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.929 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;34.915 ;24.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 486 ;20.226 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2134 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1342 ; 0.252 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1860 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 137 ; 0.207 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.261 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.249 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1677 ; 0.833 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2665 ; 0.917 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1217 ; 1.723 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1080 ; 2.547 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 50 REMARK 3 RESIDUE RANGE : A 54 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 51.7628 42.1553 50.8126 REMARK 3 T TENSOR REMARK 3 T11: -0.1446 T22: 0.0934 REMARK 3 T33: -0.2760 T12: -0.0438 REMARK 3 T13: 0.0893 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 7.0816 L22: 7.9352 REMARK 3 L33: 4.1687 L12: -3.4633 REMARK 3 L13: -0.7287 L23: 0.7559 REMARK 3 S TENSOR REMARK 3 S11: 0.0869 S12: -1.1402 S13: 0.5919 REMARK 3 S21: 0.6760 S22: 0.0776 S23: 0.0737 REMARK 3 S31: -0.3144 S32: -0.0312 S33: -0.1645 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 118 REMARK 3 RESIDUE RANGE : A 131 A 169 REMARK 3 RESIDUE RANGE : A 178 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7963 52.3959 43.8382 REMARK 3 T TENSOR REMARK 3 T11: -0.1491 T22: -0.1982 REMARK 3 T33: 0.1303 T12: 0.0875 REMARK 3 T13: 0.2513 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 8.8357 L22: 6.8928 REMARK 3 L33: 5.5832 L12: 2.4383 REMARK 3 L13: 0.6138 L23: 2.8665 REMARK 3 S TENSOR REMARK 3 S11: 0.2026 S12: -0.0435 S13: 1.3835 REMARK 3 S21: -0.1256 S22: 0.0253 S23: -0.2386 REMARK 3 S31: -0.6759 S32: -0.1736 S33: -0.2279 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 216 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8463 41.8215 18.9572 REMARK 3 T TENSOR REMARK 3 T11: -0.3147 T22: -0.0835 REMARK 3 T33: -0.2353 T12: 0.0557 REMARK 3 T13: 0.1084 T23: 0.0602 REMARK 3 L TENSOR REMARK 3 L11: 8.5919 L22: 3.9662 REMARK 3 L33: 7.0321 L12: 2.1725 REMARK 3 L13: -0.9182 L23: -0.0903 REMARK 3 S TENSOR REMARK 3 S11: -0.0961 S12: 0.2399 S13: 0.0526 REMARK 3 S21: -0.3627 S22: 0.0310 S23: 0.6080 REMARK 3 S31: -0.1606 S32: -0.8992 S33: 0.0651 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 326 A 331 REMARK 3 RESIDUE RANGE : A 351 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): 54.7079 35.1705 24.0074 REMARK 3 T TENSOR REMARK 3 T11: -0.1872 T22: -0.1266 REMARK 3 T33: -0.1353 T12: 0.0023 REMARK 3 T13: 0.2421 T23: 0.1284 REMARK 3 L TENSOR REMARK 3 L11: 5.7956 L22: 1.3169 REMARK 3 L33: 6.7402 L12: -0.3542 REMARK 3 L13: 4.1051 L23: -2.4788 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: 0.5172 S13: -0.8041 REMARK 3 S21: -0.2052 S22: 0.2409 S23: -0.4306 REMARK 3 S31: 0.6976 S32: 0.3726 S33: -0.2758 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB044343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15728 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 72.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DISODIUM SUCCINATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.04567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.09133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 82.09133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.04567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 125.25150 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 72.31399 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.04567 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLU A 1 REMARK 465 ILE A 2 REMARK 465 PRO A 51 REMARK 465 ASN A 52 REMARK 465 GLU A 53 REMARK 465 ARG A 119 REMARK 465 ASP A 120 REMARK 465 LEU A 121 REMARK 465 ALA A 122 REMARK 465 GLU A 123 REMARK 465 ILE A 124 REMARK 465 THR A 125 REMARK 465 THR A 126 REMARK 465 LEU A 127 REMARK 465 ASP A 128 REMARK 465 ARG A 129 REMARK 465 SER A 130 REMARK 465 SER A 170 REMARK 465 LYS A 171 REMARK 465 PRO A 172 REMARK 465 GLU A 173 REMARK 465 ARG A 174 REMARK 465 TYR A 175 REMARK 465 SER A 176 REMARK 465 GLY A 177 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 GLY A 334 REMARK 465 PRO A 335 REMARK 465 ASP A 336 REMARK 465 PRO A 337 REMARK 465 THR A 338 REMARK 465 ASP A 339 REMARK 465 THR A 340 REMARK 465 ALA A 341 REMARK 465 PRO A 342 REMARK 465 GLY A 343 REMARK 465 GLU A 344 REMARK 465 GLN A 345 REMARK 465 ALA A 346 REMARK 465 GLN A 347 REMARK 465 ASP A 348 REMARK 465 VAL A 349 REMARK 465 ALA A 350 REMARK 465 ASP A 373 REMARK 465 ARG A 374 REMARK 465 ASP A 375 REMARK 465 GLU A 376 REMARK 465 LEU A 377 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 50 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 3 N THR A 3 CA 0.160 REMARK 500 CYS A 212 CB CYS A 212 SG -0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 215 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG A 329 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 49 -97.04 -74.51 REMARK 500 ARG A 98 58.95 -93.70 REMARK 500 SER A 112 -167.14 -71.71 REMARK 500 ASP A 113 -86.63 -9.28 REMARK 500 ASP A 168 -75.09 -76.65 REMARK 500 PRO A 185 143.95 -31.34 REMARK 500 HIS A 187 155.74 -39.94 REMARK 500 SER A 188 31.95 76.88 REMARK 500 MSE A 240 43.45 -94.46 REMARK 500 LYS A 241 -63.91 54.01 REMARK 500 ASP A 243 100.56 -52.97 REMARK 500 PHE A 297 -5.64 77.44 REMARK 500 ARG A 329 55.17 83.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 HIS A 328 25.0 L L OUTSIDE RANGE REMARK 500 ARG A 329 23.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SIN A 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 378 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 379 DBREF 2R2J A 1 377 UNP Q9BS26 TXND4_HUMAN 30 406 SEQADV 2R2J GLY A -4 UNP Q9BS26 EXPRESSION TAG SEQADV 2R2J PRO A -3 UNP Q9BS26 EXPRESSION TAG SEQADV 2R2J LEU A -2 UNP Q9BS26 EXPRESSION TAG SEQADV 2R2J GLY A -1 UNP Q9BS26 EXPRESSION TAG SEQADV 2R2J SER A 0 UNP Q9BS26 EXPRESSION TAG SEQRES 1 A 382 GLY PRO LEU GLY SER GLU ILE THR SER LEU ASP THR GLU SEQRES 2 A 382 ASN ILE ASP GLU ILE LEU ASN ASN ALA ASP VAL ALA LEU SEQRES 3 A 382 VAL ASN PHE TYR ALA ASP TRP CYS ARG PHE SER GLN MSE SEQRES 4 A 382 LEU HIS PRO ILE PHE GLU GLU ALA SER ASP VAL ILE LYS SEQRES 5 A 382 GLU GLU PHE PRO ASN GLU ASN GLN VAL VAL PHE ALA ARG SEQRES 6 A 382 VAL ASP CYS ASP GLN HIS SER ASP ILE ALA GLN ARG TYR SEQRES 7 A 382 ARG ILE SER LYS TYR PRO THR LEU LYS LEU PHE ARG ASN SEQRES 8 A 382 GLY MSE MSE MSE LYS ARG GLU TYR ARG GLY GLN ARG SER SEQRES 9 A 382 VAL LYS ALA LEU ALA ASP TYR ILE ARG GLN GLN LYS SER SEQRES 10 A 382 ASP PRO ILE GLN GLU ILE ARG ASP LEU ALA GLU ILE THR SEQRES 11 A 382 THR LEU ASP ARG SER LYS ARG ASN ILE ILE GLY TYR PHE SEQRES 12 A 382 GLU GLN LYS ASP SER ASP ASN TYR ARG VAL PHE GLU ARG SEQRES 13 A 382 VAL ALA ASN ILE LEU HIS ASP ASP CYS ALA PHE LEU SER SEQRES 14 A 382 ALA PHE GLY ASP VAL SER LYS PRO GLU ARG TYR SER GLY SEQRES 15 A 382 ASP ASN ILE ILE TYR LYS PRO PRO GLY HIS SER ALA PRO SEQRES 16 A 382 ASP MSE VAL TYR LEU GLY ALA MSE THR ASN PHE ASP VAL SEQRES 17 A 382 THR TYR ASN TRP ILE GLN ASP LYS CYS VAL PRO LEU VAL SEQRES 18 A 382 ARG GLU ILE THR PHE GLU ASN GLY GLU GLU LEU THR GLU SEQRES 19 A 382 GLU GLY LEU PRO PHE LEU ILE LEU PHE HIS MSE LYS GLU SEQRES 20 A 382 ASP THR GLU SER LEU GLU ILE PHE GLN ASN GLU VAL ALA SEQRES 21 A 382 ARG GLN LEU ILE SER GLU LYS GLY THR ILE ASN PHE LEU SEQRES 22 A 382 HIS ALA ASP CYS ASP LYS PHE ARG HIS PRO LEU LEU HIS SEQRES 23 A 382 ILE GLN LYS THR PRO ALA ASP CYS PRO VAL ILE ALA ILE SEQRES 24 A 382 ASP SER PHE ARG HIS MSE TYR VAL PHE GLY ASP PHE LYS SEQRES 25 A 382 ASP VAL LEU ILE PRO GLY LYS LEU LYS GLN PHE VAL PHE SEQRES 26 A 382 ASP LEU HIS SER GLY LYS LEU HIS ARG GLU PHE HIS HIS SEQRES 27 A 382 GLY PRO ASP PRO THR ASP THR ALA PRO GLY GLU GLN ALA SEQRES 28 A 382 GLN ASP VAL ALA SER SER PRO PRO GLU SER SER PHE GLN SEQRES 29 A 382 LYS LEU ALA PRO SER GLU TYR ARG TYR THR LEU LEU ARG SEQRES 30 A 382 ASP ARG ASP GLU LEU MODRES 2R2J MSE A 34 MET SELENOMETHIONINE MODRES 2R2J MSE A 88 MET SELENOMETHIONINE MODRES 2R2J MSE A 89 MET SELENOMETHIONINE MODRES 2R2J MSE A 90 MET SELENOMETHIONINE MODRES 2R2J MSE A 192 MET SELENOMETHIONINE MODRES 2R2J MSE A 198 MET SELENOMETHIONINE MODRES 2R2J MSE A 240 MET SELENOMETHIONINE MODRES 2R2J MSE A 300 MET SELENOMETHIONINE HET MSE A 34 8 HET MSE A 88 8 HET MSE A 89 8 HET MSE A 90 8 HET MSE A 192 8 HET MSE A 198 8 HET MSE A 240 8 HET MSE A 300 8 HET SIN A 380 8 HET FMT A 378 3 HET FMT A 379 3 HETNAM MSE SELENOMETHIONINE HETNAM SIN SUCCINIC ACID HETNAM FMT FORMIC ACID FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 SIN C4 H6 O4 FORMUL 3 FMT 2(C H2 O2) FORMUL 5 HOH *110(H2 O) HELIX 1 1 ASN A 9 ALA A 17 1 9 HELIX 2 2 CYS A 29 LYS A 47 1 19 HELIX 3 3 HIS A 66 TYR A 73 1 8 HELIX 4 4 SER A 99 SER A 112 1 14 HELIX 5 5 SER A 143 HIS A 157 1 15 HELIX 6 6 ASN A 200 VAL A 213 1 14 HELIX 7 7 THR A 220 GLU A 229 1 10 HELIX 8 8 THR A 244 LEU A 258 1 15 HELIX 9 9 ILE A 259 LYS A 262 5 4 HELIX 10 10 PHE A 275 ILE A 282 1 8 HELIX 11 11 THR A 285 CYS A 289 5 5 HELIX 12 12 PHE A 306 ILE A 311 5 6 HELIX 13 13 GLY A 313 GLY A 325 1 13 HELIX 14 14 SER A 357 ALA A 362 5 6 SHEET 1 A 4 VAL A 56 ASP A 62 0 SHEET 2 A 4 VAL A 19 TYR A 25 1 N TYR A 25 O VAL A 61 SHEET 3 A 4 THR A 80 ARG A 85 -1 O THR A 80 N PHE A 24 SHEET 4 A 4 MSE A 88 GLU A 93 -1 O MSE A 90 N LEU A 83 SHEET 1 B 2 LYS A 77 TYR A 78 0 SHEET 2 B 2 THR A 369 LEU A 370 -1 O THR A 369 N TYR A 78 SHEET 1 C 5 GLN A 116 ILE A 118 0 SHEET 2 C 5 ALA A 161 PHE A 166 1 O SER A 164 N ILE A 118 SHEET 3 C 5 ASN A 133 PHE A 138 1 N ILE A 134 O ALA A 161 SHEET 4 C 5 ASN A 179 LYS A 183 -1 O ASN A 179 N TYR A 137 SHEET 5 C 5 MSE A 192 VAL A 193 -1 O MSE A 192 N TYR A 182 SHEET 1 D 5 ARG A 217 GLU A 218 0 SHEET 2 D 5 ASN A 266 ASP A 271 1 O HIS A 269 N ARG A 217 SHEET 3 D 5 PHE A 234 HIS A 239 1 N LEU A 237 O ALA A 270 SHEET 4 D 5 VAL A 291 ASP A 295 -1 O VAL A 291 N PHE A 238 SHEET 5 D 5 MSE A 300 VAL A 302 -1 O TYR A 301 N ILE A 294 SSBOND 1 CYS A 272 CYS A 289 1555 1555 2.07 LINK C GLN A 33 N MSE A 34 1555 1555 1.32 LINK C MSE A 34 N LEU A 35 1555 1555 1.32 LINK C GLY A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N MSE A 90 1555 1555 1.32 LINK C MSE A 90 N LYS A 91 1555 1555 1.32 LINK C ASP A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N VAL A 193 1555 1555 1.33 LINK C ALA A 197 N MSE A 198 1555 1555 1.32 LINK C MSE A 198 N THR A 199 1555 1555 1.33 LINK C HIS A 239 N MSE A 240 1555 1555 1.33 LINK C MSE A 240 N LYS A 241 1555 1555 1.33 LINK C HIS A 299 N MSE A 300 1555 1555 1.32 LINK C MSE A 300 N TYR A 301 1555 1555 1.33 CISPEP 1 TYR A 78 PRO A 79 0 -5.36 CISPEP 2 ASP A 113 PRO A 114 0 -23.10 CISPEP 3 CYS A 289 PRO A 290 0 5.80 CISPEP 4 HIS A 328 ARG A 329 0 11.71 CISPEP 5 ARG A 329 GLU A 330 0 2.62 CISPEP 6 GLU A 330 PHE A 331 0 -0.58 SITE 1 AC1 4 LYS A 91 ARG A 92 ILE A 155 TYR A 205 SITE 1 AC2 2 HIS A 157 HOH A 487 SITE 1 AC3 2 ARG A 30 ASN A 206 CRYST1 83.501 83.501 123.137 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011976 0.006914 0.000000 0.00000 SCALE2 0.000000 0.013829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008121 0.00000