HEADER TRANSFERASE 29-AUG-07 2R3E TITLE CRYSTAL STRUCTURE OF A RIBOKINASE-LIKE SUPERFAMILY PROTEIN (EF1790) TITLE 2 FROM ENTEROCOCCUS FAECALIS V583 AT 1.95 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: YJEF-RELATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 ATCC: 700802; SOURCE 6 GENE: NP_815490.1, EF_1790; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE KINASE IN THE RIBOKINASE-LIKE SUPERFAMILY, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 9 15-NOV-23 2R3E 1 REMARK REVDAT 8 20-SEP-23 2R3E 1 REMARK REVDAT 7 25-JAN-23 2R3E 1 REMARK SEQADV REVDAT 6 24-JUL-19 2R3E 1 REMARK LINK REVDAT 5 25-OCT-17 2R3E 1 REMARK REVDAT 4 13-JUL-11 2R3E 1 VERSN REVDAT 3 28-JUL-10 2R3E 1 TITLE KEYWDS REVDAT 2 24-FEB-09 2R3E 1 VERSN REVDAT 1 11-SEP-07 2R3E 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE KINASE IN THE JRNL TITL 2 RIBOKINASE-LIKE SUPERFAMILY FROM ENTEROCOCCUS FAECALIS V583 JRNL TITL 3 (NP_815490.1) AT 1.95 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2095 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : 1.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.150 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2155 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1417 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2926 ; 1.427 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3492 ; 0.927 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 5.969 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;39.998 ;24.884 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;14.108 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;11.811 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2389 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 401 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 462 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1413 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1074 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1054 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 129 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.161 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.103 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1497 ; 2.189 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 566 ; 0.520 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2212 ; 2.971 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 848 ; 5.451 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 712 ; 6.879 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 276 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3406 32.1618 0.3724 REMARK 3 T TENSOR REMARK 3 T11: -0.0108 T22: -0.0532 REMARK 3 T33: -0.0068 T12: -0.0206 REMARK 3 T13: 0.0115 T23: -0.0592 REMARK 3 L TENSOR REMARK 3 L11: 0.9296 L22: 0.8629 REMARK 3 L33: 0.9653 L12: 0.4354 REMARK 3 L13: -0.2326 L23: -0.0064 REMARK 3 S TENSOR REMARK 3 S11: -0.0492 S12: 0.1138 S13: -0.2609 REMARK 3 S21: -0.0669 S22: -0.0147 S23: 0.0149 REMARK 3 S31: 0.1371 S32: -0.0761 S33: 0.0640 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. ONE EDO MODELED IS PRESENT IN CRYO CONDITION. REMARK 4 REMARK 4 2R3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23697 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 27.472 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.66600 REMARK 200 R SYM FOR SHELL (I) : 0.66600 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2R3B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 10.0% PEG 6000, 0.1M BICINE REMARK 280 PH 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.94400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.94400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.09650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.94400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.94400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.09650 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 54.94400 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.94400 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 27.09650 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 54.94400 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 54.94400 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 27.09650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION REMARK 300 ON BURIED SURFACE AREA. REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A TETRAMER AS A REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11190 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 109.88800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 109.88800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 109.88800 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 109.88800 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 HIS A 277 REMARK 465 THR A 278 REMARK 465 ALA A 279 REMARK 465 PRO A 280 REMARK 465 ASP A 281 REMARK 465 SER A 282 REMARK 465 GLU A 283 REMARK 465 LEU A 284 REMARK 465 LEU A 285 REMARK 465 GLU A 286 REMARK 465 GLN A 287 REMARK 465 LYS A 288 REMARK 465 ARG A 289 REMARK 465 SER A 290 REMARK 465 ARG A 291 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 19 CG OD1 OD2 REMARK 470 ASN A 139 CB CG OD1 ND2 REMARK 470 GLN A 275 CG CD OE1 NE2 REMARK 470 PRO A 276 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 60.25 -104.35 REMARK 500 ASN A 34 -168.26 -73.24 REMARK 500 SER A 188 -166.52 -166.27 REMARK 500 GLN A 275 109.64 -59.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 293 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375213 RELATED DB: TARGETDB REMARK 900 RELATED ID: 2R3B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PUTATIVE KINASE IN THE RIBOKINASE-LIKE REMARK 900 SUPERFAMILY FROM ENTEROCOCCUS FAECALIS V583 (NP_815490.1), REMARK 900 ORTHORHOMBIC FORM. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 2R3E A 1 291 UNP Q833Y3 Q833Y3_ENTFA 1 291 SEQADV 2R3E MSE A -18 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E GLY A -17 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E SER A -16 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E ASP A -15 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E LYS A -14 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E ILE A -13 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E HIS A -12 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E HIS A -11 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E HIS A -10 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E HIS A -9 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E HIS A -8 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E HIS A -7 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E GLU A -6 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E ASN A -5 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E LEU A -4 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E TYR A -3 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E PHE A -2 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E GLN A -1 UNP Q833Y3 EXPRESSION TAG SEQADV 2R3E GLY A 0 UNP Q833Y3 EXPRESSION TAG SEQRES 1 A 310 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 310 ASN LEU TYR PHE GLN GLY MSE ARG TYR LEU SER LYS ASP SEQRES 3 A 310 ILE LEU GLU GLU VAL ILE THR GLN ARG PRO SER ASP SER SEQRES 4 A 310 TYR LYS SER ASN PHE GLY ARG VAL VAL LEU ILE GLY GLY SEQRES 5 A 310 ASN ARG GLN TYR GLY GLY ALA ILE ILE MSE SER THR GLU SEQRES 6 A 310 ALA CYS ILE ASN SER GLY ALA GLY LEU THR THR VAL ILE SEQRES 7 A 310 THR ASP VAL LYS ASN HIS GLY PRO LEU HIS ALA ARG CYS SEQRES 8 A 310 PRO GLU ALA MSE VAL VAL GLY PHE GLU GLU THR VAL LEU SEQRES 9 A 310 LEU THR ASN VAL VAL GLU GLN ALA ASP VAL ILE LEU ILE SEQRES 10 A 310 GLY PRO GLY LEU GLY LEU ASP ALA THR ALA GLN GLN ILE SEQRES 11 A 310 LEU LYS MSE VAL LEU ALA GLN HIS GLN LYS GLN GLN TRP SEQRES 12 A 310 LEU ILE ILE ASP GLY SER ALA ILE THR LEU PHE SER GLN SEQRES 13 A 310 GLY ASN PHE SER LEU THR TYR PRO GLU LYS VAL VAL PHE SEQRES 14 A 310 THR PRO HIS GLN MSE GLU TRP GLN ARG LEU SER HIS LEU SEQRES 15 A 310 PRO ILE GLU GLN GLN THR LEU ALA ASN ASN GLN ARG GLN SEQRES 16 A 310 GLN ALA LYS LEU GLY SER THR ILE VAL LEU LYS SER HIS SEQRES 17 A 310 ARG THR THR ILE PHE HIS ALA GLY GLU PRO PHE GLN ASN SEQRES 18 A 310 THR GLY GLY ASN PRO GLY MSE ALA THR GLY GLY THR GLY SEQRES 19 A 310 ASP THR LEU ALA GLY ILE ILE ALA GLY PHE LEU ALA GLN SEQRES 20 A 310 PHE LYS PRO THR ILE GLU THR ILE ALA GLY ALA VAL TYR SEQRES 21 A 310 LEU HIS SER LEU ILE GLY ASP ASP LEU ALA LYS THR ASP SEQRES 22 A 310 TYR VAL VAL LEU PRO THR LYS ILE SER GLN ALA LEU PRO SEQRES 23 A 310 THR TYR MSE LYS LYS TYR ALA GLN PRO HIS THR ALA PRO SEQRES 24 A 310 ASP SER GLU LEU LEU GLU GLN LYS ARG SER ARG MODRES 2R3E MSE A 1 MET SELENOMETHIONINE MODRES 2R3E MSE A 43 MET SELENOMETHIONINE MODRES 2R3E MSE A 76 MET SELENOMETHIONINE MODRES 2R3E MSE A 114 MET SELENOMETHIONINE MODRES 2R3E MSE A 155 MET SELENOMETHIONINE MODRES 2R3E MSE A 209 MET SELENOMETHIONINE MODRES 2R3E MSE A 270 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 43 8 HET MSE A 76 8 HET MSE A 114 8 HET MSE A 155 8 HET MSE A 209 8 HET MSE A 270 8 HET EDO A 292 4 HET EDO A 293 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 HOH *142(H2 O) HELIX 1 1 SER A 5 ILE A 13 1 9 HELIX 2 2 TYR A 21 PHE A 25 5 5 HELIX 3 3 TYR A 37 GLY A 52 1 16 HELIX 4 4 ASP A 61 LYS A 63 5 3 HELIX 5 5 ASN A 64 CYS A 72 1 9 HELIX 6 6 GLU A 82 ALA A 93 1 12 HELIX 7 7 ASP A 105 HIS A 119 1 15 HELIX 8 8 GLY A 129 GLY A 138 1 10 HELIX 9 9 TYR A 144 GLU A 146 5 3 HELIX 10 10 HIS A 153 HIS A 162 1 10 HELIX 11 11 PRO A 164 GLN A 168 5 5 HELIX 12 12 THR A 169 GLY A 181 1 13 HELIX 13 13 ASN A 206 ALA A 210 5 5 HELIX 14 14 GLY A 213 PHE A 229 1 17 HELIX 15 15 THR A 232 LYS A 252 1 21 HELIX 16 16 LEU A 258 ALA A 265 1 8 HELIX 17 17 ALA A 265 ALA A 274 1 10 SHEET 1 A10 ARG A 2 TYR A 3 0 SHEET 2 A10 PHE A 200 GLN A 201 1 O GLN A 201 N ARG A 2 SHEET 3 A10 THR A 192 PHE A 194 -1 N ILE A 193 O PHE A 200 SHEET 4 A10 THR A 183 LEU A 186 -1 N ILE A 184 O PHE A 194 SHEET 5 A10 VAL A 148 THR A 151 1 N PHE A 150 O VAL A 185 SHEET 6 A10 TRP A 124 ASP A 128 1 N LEU A 125 O VAL A 149 SHEET 7 A10 VAL A 95 ILE A 98 1 N ILE A 96 O ILE A 126 SHEET 8 A10 ARG A 27 ILE A 31 1 N ILE A 31 O LEU A 97 SHEET 9 A10 LEU A 55 ILE A 59 1 O ILE A 59 N LEU A 30 SHEET 10 A10 MSE A 76 VAL A 78 1 O MSE A 76 N VAL A 58 LINK C MSE A 1 N ARG A 2 1555 1555 1.33 LINK C ILE A 42 N MSE A 43 1555 1555 1.34 LINK C MSE A 43 N SER A 44 1555 1555 1.33 LINK C ALA A 75 N MSE A 76 1555 1555 1.33 LINK C MSE A 76 N VAL A 77 1555 1555 1.34 LINK C LYS A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N VAL A 115 1555 1555 1.34 LINK C GLN A 154 N MSE A 155 1555 1555 1.33 LINK C MSE A 155 N GLU A 156 1555 1555 1.33 LINK C GLY A 208 N MSE A 209 1555 1555 1.33 LINK C MSE A 209 N ALA A 210 1555 1555 1.32 LINK C TYR A 269 N MSE A 270 1555 1555 1.33 LINK C MSE A 270 N LYS A 271 1555 1555 1.33 SITE 1 AC1 2 ARG A 35 HOH A 370 SITE 1 AC2 5 GLN A 177 SER A 182 THR A 183 ALA A 196 SITE 2 AC2 5 HOH A 382 CRYST1 109.888 109.888 54.193 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018450 0.00000 HETATM 1 N MSE A 1 32.797 18.609 14.371 1.00 54.07 N HETATM 2 CA MSE A 1 33.248 20.010 14.073 1.00 57.46 C HETATM 3 C MSE A 1 34.199 20.548 15.138 1.00 54.50 C HETATM 4 O MSE A 1 33.894 20.499 16.332 1.00 52.98 O HETATM 5 CB MSE A 1 32.045 20.919 13.993 1.00 55.44 C HETATM 6 CG MSE A 1 32.347 22.296 13.463 1.00 63.42 C HETATM 7 SE MSE A 1 30.683 23.215 13.025 0.75 73.59 SE HETATM 8 CE MSE A 1 30.914 23.226 11.265 1.00 40.66 C