HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-AUG-07 2R41 TITLE CRYSTAL STRUCTURE OF THE PROTEIN OF UNKNOWN FUNCTION FROM ENTEROCOCCUS TITLE 2 FAECALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: V583; SOURCE 5 ATCC: 700802; SOURCE 6 GENE: EF_0819; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS ALPHA-BETA STRUCTURE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,H.LI,S.MOY,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 (MCSG) REVDAT 4 06-NOV-24 2R41 1 SEQADV LINK REVDAT 3 13-JUL-11 2R41 1 VERSN REVDAT 2 24-FEB-09 2R41 1 VERSN REVDAT 1 11-SEP-07 2R41 0 JRNL AUTH Y.KIM,H.LI,S.MOY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THE PROTEIN OF UNKNOWN FUNCTION FROM JRNL TITL 2 ENTEROCOCCUS FAECALIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 13628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 722 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 958 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.51000 REMARK 3 B22 (A**2) : 3.51000 REMARK 3 B33 (A**2) : -7.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.359 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.255 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.647 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3463 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4715 ; 1.645 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 7.437 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;35.277 ;23.892 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;21.086 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;20.570 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2664 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1499 ; 0.248 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2416 ; 0.335 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 176 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.215 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.261 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2123 ; 0.684 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3449 ; 1.370 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1340 ; 2.098 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1266 ; 3.401 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3285 7.7590 49.4647 REMARK 3 T TENSOR REMARK 3 T11: -0.0388 T22: -0.0844 REMARK 3 T33: -0.1260 T12: -0.0102 REMARK 3 T13: -0.0195 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 2.7609 L22: 1.1020 REMARK 3 L33: 5.1727 L12: 0.3677 REMARK 3 L13: 0.7509 L23: 0.9294 REMARK 3 S TENSOR REMARK 3 S11: 0.1401 S12: -0.1293 S13: -0.0677 REMARK 3 S21: 0.0385 S22: -0.0754 S23: -0.0101 REMARK 3 S31: 0.4146 S32: -0.1689 S33: -0.0646 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): 44.0422 18.8914 69.8602 REMARK 3 T TENSOR REMARK 3 T11: -0.0875 T22: -0.0064 REMARK 3 T33: -0.1088 T12: 0.0430 REMARK 3 T13: -0.0215 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 2.0498 L22: 3.5409 REMARK 3 L33: 3.5537 L12: 0.1060 REMARK 3 L13: 1.8404 L23: -0.2292 REMARK 3 S TENSOR REMARK 3 S11: -0.1468 S12: -0.2176 S13: 0.0359 REMARK 3 S21: 0.1399 S22: 0.0425 S23: -0.0051 REMARK 3 S31: 0.0527 S32: -0.3154 S33: 0.1043 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 106 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8442 29.7239 42.5726 REMARK 3 T TENSOR REMARK 3 T11: -0.0965 T22: -0.0465 REMARK 3 T33: -0.0680 T12: 0.0998 REMARK 3 T13: -0.0463 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 4.0656 L22: 2.4761 REMARK 3 L33: 3.2499 L12: 1.4738 REMARK 3 L13: 1.2178 L23: 0.7669 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: 0.0386 S13: -0.0480 REMARK 3 S21: -0.1577 S22: -0.0197 S23: -0.0420 REMARK 3 S31: -0.0571 S32: -0.1382 S33: 0.0091 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 105 REMARK 3 ORIGIN FOR THE GROUP (A): 64.2917 13.5810 60.0404 REMARK 3 T TENSOR REMARK 3 T11: -0.0907 T22: -0.0727 REMARK 3 T33: -0.1062 T12: 0.0472 REMARK 3 T13: 0.0437 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 2.6191 L22: 2.3492 REMARK 3 L33: 7.6102 L12: 0.2303 REMARK 3 L13: 0.0347 L23: -1.3189 REMARK 3 S TENSOR REMARK 3 S11: 0.0894 S12: 0.0973 S13: 0.1064 REMARK 3 S21: 0.0820 S22: -0.0391 S23: -0.0556 REMARK 3 S31: -0.1039 S32: 0.2086 S33: -0.0503 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2R41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14597 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11800 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.60400 REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M BIS-TRIS REMARK 280 PH 6.5, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.92450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.99150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.99150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.38675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.99150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.99150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.46225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.99150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.99150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 136.38675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.99150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.99150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.46225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.92450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TETRAMER OR OCTAMER, BUT NONE ARE CONFIRMED. FOR TETRAMER, REMARK 300 AS THEY ARE IN THE ASYMETRIC UNIT OR A AND C ARE AS IN THE REMARK 300 ASYMETRIC UNIT AND B AND D ARE BY -Y+1/2,X-1/2,Z-1/4 WITH REMARK 300 TRANSLATION OF 40.991 -40.992 -45.462. FOR OCTAMER: ABCD IN THE REMARK 300 ASYMMETRIC UNIT + ANOTHER SET FROM -Y+1,-X+1,-Z+1/2 WITH REMARK 300 TRANSLATION OF 81.983 81.983 90.924. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12500 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 81.98300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 81.98300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 90.92450 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4900 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 40.99150 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -40.99150 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -45.46225 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 127 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 PHE A 2 REMARK 465 GLU A 106 REMARK 465 SER A 107 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 LEU B 105 REMARK 465 GLU B 106 REMARK 465 SER B 107 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 SER C 107 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MSE D 1 REMARK 465 GLU D 106 REMARK 465 SER D 107 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU D 65 CG GLU D 65 CD 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU D 21 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 94 -57.74 -122.80 REMARK 500 HIS A 94 -39.10 -132.47 REMARK 500 LEU B 37 -62.64 -102.29 REMARK 500 HIS B 94 -70.95 -101.22 REMARK 500 ASN C 66 34.17 70.24 REMARK 500 LEU D 37 -61.54 -104.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC28898 RELATED DB: TARGETDB DBREF 2R41 A 1 107 UNP Q837L7 Q837L7_ENTFA 1 107 DBREF 2R41 B 1 107 UNP Q837L7 Q837L7_ENTFA 1 107 DBREF 2R41 C 1 107 UNP Q837L7 Q837L7_ENTFA 1 107 DBREF 2R41 D 1 107 UNP Q837L7 Q837L7_ENTFA 1 107 SEQADV 2R41 SER A -2 UNP Q837L7 EXPRESSION TAG SEQADV 2R41 ASN A -1 UNP Q837L7 EXPRESSION TAG SEQADV 2R41 ALA A 0 UNP Q837L7 EXPRESSION TAG SEQADV 2R41 SER B -2 UNP Q837L7 EXPRESSION TAG SEQADV 2R41 ASN B -1 UNP Q837L7 EXPRESSION TAG SEQADV 2R41 ALA B 0 UNP Q837L7 EXPRESSION TAG SEQADV 2R41 SER C -2 UNP Q837L7 EXPRESSION TAG SEQADV 2R41 ASN C -1 UNP Q837L7 EXPRESSION TAG SEQADV 2R41 ALA C 0 UNP Q837L7 EXPRESSION TAG SEQADV 2R41 SER D -2 UNP Q837L7 EXPRESSION TAG SEQADV 2R41 ASN D -1 UNP Q837L7 EXPRESSION TAG SEQADV 2R41 ALA D 0 UNP Q837L7 EXPRESSION TAG SEQRES 1 A 110 SER ASN ALA MSE PHE GLU ARG PHE ASP SER ASP ARG SER SEQRES 2 A 110 ARG TYR ALA SER LEU GLY VAL VAL SER SER LEU PRO SER SEQRES 3 A 110 GLY LEU ILE ASP SER ILE TRP LEU ILE ILE ASP LEU ASN SEQRES 4 A 110 LEU LYS GLY VAL ILE PRO LEU ASN ASP LEU LEU HIS PHE SEQRES 5 A 110 ASP LEU LEU ASN ASN ASN GLY LYS VAL THR VAL HIS PHE SEQRES 6 A 110 SER GLN GLU ASN SER SER VAL GLU MSE ALA ILE ASP LEU SEQRES 7 A 110 PRO PHE SER TYR SER THR ALA TYR PRO SER ARG ILE PHE SEQRES 8 A 110 ALA PHE ASP ASP GLY HIS ARG GLU THR ILE LEU LEU PRO SEQRES 9 A 110 ALA GLU MSE LEU GLU SER SEQRES 1 B 110 SER ASN ALA MSE PHE GLU ARG PHE ASP SER ASP ARG SER SEQRES 2 B 110 ARG TYR ALA SER LEU GLY VAL VAL SER SER LEU PRO SER SEQRES 3 B 110 GLY LEU ILE ASP SER ILE TRP LEU ILE ILE ASP LEU ASN SEQRES 4 B 110 LEU LYS GLY VAL ILE PRO LEU ASN ASP LEU LEU HIS PHE SEQRES 5 B 110 ASP LEU LEU ASN ASN ASN GLY LYS VAL THR VAL HIS PHE SEQRES 6 B 110 SER GLN GLU ASN SER SER VAL GLU MSE ALA ILE ASP LEU SEQRES 7 B 110 PRO PHE SER TYR SER THR ALA TYR PRO SER ARG ILE PHE SEQRES 8 B 110 ALA PHE ASP ASP GLY HIS ARG GLU THR ILE LEU LEU PRO SEQRES 9 B 110 ALA GLU MSE LEU GLU SER SEQRES 1 C 110 SER ASN ALA MSE PHE GLU ARG PHE ASP SER ASP ARG SER SEQRES 2 C 110 ARG TYR ALA SER LEU GLY VAL VAL SER SER LEU PRO SER SEQRES 3 C 110 GLY LEU ILE ASP SER ILE TRP LEU ILE ILE ASP LEU ASN SEQRES 4 C 110 LEU LYS GLY VAL ILE PRO LEU ASN ASP LEU LEU HIS PHE SEQRES 5 C 110 ASP LEU LEU ASN ASN ASN GLY LYS VAL THR VAL HIS PHE SEQRES 6 C 110 SER GLN GLU ASN SER SER VAL GLU MSE ALA ILE ASP LEU SEQRES 7 C 110 PRO PHE SER TYR SER THR ALA TYR PRO SER ARG ILE PHE SEQRES 8 C 110 ALA PHE ASP ASP GLY HIS ARG GLU THR ILE LEU LEU PRO SEQRES 9 C 110 ALA GLU MSE LEU GLU SER SEQRES 1 D 110 SER ASN ALA MSE PHE GLU ARG PHE ASP SER ASP ARG SER SEQRES 2 D 110 ARG TYR ALA SER LEU GLY VAL VAL SER SER LEU PRO SER SEQRES 3 D 110 GLY LEU ILE ASP SER ILE TRP LEU ILE ILE ASP LEU ASN SEQRES 4 D 110 LEU LYS GLY VAL ILE PRO LEU ASN ASP LEU LEU HIS PHE SEQRES 5 D 110 ASP LEU LEU ASN ASN ASN GLY LYS VAL THR VAL HIS PHE SEQRES 6 D 110 SER GLN GLU ASN SER SER VAL GLU MSE ALA ILE ASP LEU SEQRES 7 D 110 PRO PHE SER TYR SER THR ALA TYR PRO SER ARG ILE PHE SEQRES 8 D 110 ALA PHE ASP ASP GLY HIS ARG GLU THR ILE LEU LEU PRO SEQRES 9 D 110 ALA GLU MSE LEU GLU SER MODRES 2R41 MSE A 71 MET SELENOMETHIONINE MODRES 2R41 MSE A 104 MET SELENOMETHIONINE MODRES 2R41 MSE B 1 MET SELENOMETHIONINE MODRES 2R41 MSE B 71 MET SELENOMETHIONINE MODRES 2R41 MSE B 104 MET SELENOMETHIONINE MODRES 2R41 MSE C 1 MET SELENOMETHIONINE MODRES 2R41 MSE C 71 MET SELENOMETHIONINE MODRES 2R41 MSE C 104 MET SELENOMETHIONINE MODRES 2R41 MSE D 71 MET SELENOMETHIONINE MODRES 2R41 MSE D 104 MET SELENOMETHIONINE HET MSE A 71 8 HET MSE A 104 8 HET MSE B 1 8 HET MSE B 71 8 HET MSE B 104 8 HET MSE C 1 8 HET MSE C 71 8 HET MSE C 104 8 HET MSE D 71 8 HET MSE D 104 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 5 HOH *102(H2 O) HELIX 1 1 LEU A 15 SER A 19 1 5 HELIX 2 2 PRO A 22 LEU A 37 1 16 HELIX 3 3 LEU A 100 MSE A 104 5 5 HELIX 4 4 LEU B 15 SER B 19 1 5 HELIX 5 5 PRO B 22 LEU B 37 1 16 HELIX 6 6 LEU B 100 MSE B 104 5 5 HELIX 7 7 SER C 14 SER C 19 1 6 HELIX 8 8 PRO C 22 LEU C 37 1 16 HELIX 9 9 LEU C 100 MSE C 104 5 5 HELIX 10 10 SER D 14 SER D 19 1 6 HELIX 11 11 PRO D 22 LEU D 37 1 16 HELIX 12 12 LEU D 100 MSE D 104 5 5 SHEET 1 A12 MSE A 71 SER A 78 0 SHEET 2 A12 LYS A 57 SER A 63 -1 N VAL A 60 O ILE A 73 SHEET 3 A12 LEU A 46 ASN A 54 -1 N LEU A 52 O THR A 59 SHEET 4 A12 ARG A 86 ASP A 91 -1 O ALA A 89 N LEU A 47 SHEET 5 A12 GLU A 96 LEU A 99 -1 O THR A 97 N PHE A 90 SHEET 6 A12 ARG A 11 SER A 14 1 N SER A 14 O ILE A 98 SHEET 7 A12 SER B 10 SER B 14 -1 O ALA B 13 N ALA A 13 SHEET 8 A12 ARG B 95 LEU B 99 1 O GLU B 96 N TYR B 12 SHEET 9 A12 ARG B 86 ASP B 91 -1 N PHE B 90 O THR B 97 SHEET 10 A12 LEU B 46 ASN B 54 -1 N LEU B 47 O ALA B 89 SHEET 11 A12 LYS B 57 GLN B 64 -1 O THR B 59 N LEU B 52 SHEET 12 A12 MSE B 71 SER B 78 -1 O MSE B 71 N PHE B 62 SHEET 1 B 6 SER C 10 ALA C 13 0 SHEET 2 B 6 ARG C 95 LEU C 99 1 O GLU C 96 N TYR C 12 SHEET 3 B 6 ARG C 86 ASP C 91 -1 N PHE C 90 O THR C 97 SHEET 4 B 6 LEU C 46 ASN C 54 -1 N PHE C 49 O ILE C 87 SHEET 5 B 6 LYS C 57 SER C 63 -1 O THR C 59 N LEU C 52 SHEET 6 B 6 GLU C 70 SER C 78 -1 O MSE C 71 N PHE C 62 SHEET 1 C 6 SER D 10 ALA D 13 0 SHEET 2 C 6 ARG D 95 LEU D 99 1 O GLU D 96 N TYR D 12 SHEET 3 C 6 ARG D 86 ASP D 91 -1 N PHE D 90 O THR D 97 SHEET 4 C 6 LEU D 46 ASN D 54 -1 N PHE D 49 O ILE D 87 SHEET 5 C 6 LYS D 57 SER D 63 -1 O LYS D 57 N ASN D 54 SHEET 6 C 6 MSE D 71 SER D 78 -1 O ILE D 73 N VAL D 60 LINK C GLU A 70 N MSE A 71 1555 1555 1.33 LINK C MSE A 71 N ALA A 72 1555 1555 1.32 LINK C GLU A 103 N MSE A 104 1555 1555 1.34 LINK C MSE A 104 N LEU A 105 1555 1555 1.34 LINK C MSE B 1 N PHE B 2 1555 1555 1.35 LINK C GLU B 70 N MSE B 71 1555 1555 1.31 LINK C MSE B 71 N ALA B 72 1555 1555 1.33 LINK C GLU B 103 N MSE B 104 1555 1555 1.33 LINK C MSE C 1 N PHE C 2 1555 1555 1.33 LINK C GLU C 70 N MSE C 71 1555 1555 1.32 LINK C MSE C 71 N ALA C 72 1555 1555 1.33 LINK C GLU C 103 N MSE C 104 1555 1555 1.34 LINK C MSE C 104 N LEU C 105 1555 1555 1.33 LINK C GLU D 70 N MSE D 71 1555 1555 1.33 LINK C MSE D 71 N ALA D 72 1555 1555 1.34 LINK C GLU D 103 N MSE D 104 1555 1555 1.33 LINK C MSE D 104 N LEU D 105 1555 1555 1.33 CRYST1 81.983 81.983 181.849 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012198 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005499 0.00000 CONECT 528 535 CONECT 535 528 536 CONECT 536 535 537 539 CONECT 537 536 538 543 CONECT 538 537 CONECT 539 536 540 CONECT 540 539 541 CONECT 541 540 542 CONECT 542 541 CONECT 543 537 CONECT 813 820 CONECT 820 813 821 CONECT 821 820 822 824 CONECT 822 821 823 828 CONECT 823 822 CONECT 824 821 825 CONECT 825 824 826 CONECT 826 825 827 CONECT 827 826 CONECT 828 822 CONECT 837 838 CONECT 838 837 839 841 CONECT 839 838 840 845 CONECT 840 839 CONECT 841 838 842 CONECT 842 841 843 CONECT 843 842 844 CONECT 844 843 CONECT 845 839 CONECT 1393 1400 CONECT 1400 1393 1401 CONECT 1401 1400 1402 1404 CONECT 1402 1401 1403 1408 CONECT 1403 1402 CONECT 1404 1401 1405 CONECT 1405 1404 1406 CONECT 1406 1405 1407 CONECT 1407 1406 CONECT 1408 1402 CONECT 1667 1674 CONECT 1674 1667 1675 CONECT 1675 1674 1676 1678 CONECT 1676 1675 1677 CONECT 1677 1676 CONECT 1678 1675 1679 CONECT 1679 1678 1680 CONECT 1680 1679 1681 CONECT 1681 1680 CONECT 1683 1684 CONECT 1684 1683 1685 1687 CONECT 1685 1684 1686 1691 CONECT 1686 1685 CONECT 1687 1684 1688 CONECT 1688 1687 1689 CONECT 1689 1688 1690 CONECT 1690 1689 CONECT 1691 1685 CONECT 2248 2255 CONECT 2255 2248 2256 CONECT 2256 2255 2257 2259 CONECT 2257 2256 2258 2263 CONECT 2258 2257 CONECT 2259 2256 2260 CONECT 2260 2259 2261 CONECT 2261 2260 2262 CONECT 2262 2261 CONECT 2263 2257 CONECT 2512 2519 CONECT 2519 2512 2520 CONECT 2520 2519 2521 2523 CONECT 2521 2520 2522 2527 CONECT 2522 2521 CONECT 2523 2520 2524 CONECT 2524 2523 2525 CONECT 2525 2524 2526 CONECT 2526 2525 CONECT 2527 2521 CONECT 3093 3100 CONECT 3100 3093 3101 CONECT 3101 3100 3102 3104 CONECT 3102 3101 3103 3108 CONECT 3103 3102 CONECT 3104 3101 3105 CONECT 3105 3104 3106 CONECT 3106 3105 3107 CONECT 3107 3106 CONECT 3108 3102 CONECT 3357 3364 CONECT 3364 3357 3365 CONECT 3365 3364 3366 3368 CONECT 3366 3365 3367 3372 CONECT 3367 3366 CONECT 3368 3365 3369 CONECT 3369 3368 3370 CONECT 3370 3369 3371 CONECT 3371 3370 CONECT 3372 3366 MASTER 458 0 10 12 24 0 0 6 3408 4 97 36 END