HEADER HYDROLASE 30-AUG-07 2R44 TITLE CRYSTAL STRUCTURE OF A PUTATIVE ATPASE (CHU_0153) FROM CYTOPHAGA TITLE 2 HUTCHINSONII ATCC 33406 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYTOPHAGA HUTCHINSONII ATCC 33406; SOURCE 3 ORGANISM_TAXID: 269798; SOURCE 4 STRAIN: NCIMB 9469; SOURCE 5 GENE: YP_676785.1, CHU_0153; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE ATPASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2R44 1 REMARK SEQADV REVDAT 6 24-JUL-19 2R44 1 REMARK LINK REVDAT 5 25-OCT-17 2R44 1 REMARK REVDAT 4 13-JUL-11 2R44 1 VERSN REVDAT 3 28-JUL-10 2R44 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2R44 1 VERSN REVDAT 1 18-SEP-07 2R44 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ATPASE (YP_676785.1) FROM JRNL TITL 2 CYTOPHAGA HUTCHINSONII ATCC 33406 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1470 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2006 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2585 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : -0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.780 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2820 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1960 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3802 ; 1.702 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4812 ; 1.304 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 3.856 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;36.077 ;24.560 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;12.096 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.395 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3056 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 537 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 552 ; 0.184 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1979 ; 0.140 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1329 ; 0.169 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1405 ; 0.083 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 166 ; 0.176 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.093 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 72 ; 0.169 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.157 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1757 ; 1.993 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 679 ; 0.491 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2760 ; 3.133 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1198 ; 5.442 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1028 ; 7.653 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 44.8920 16.3107 -7.3264 REMARK 3 T TENSOR REMARK 3 T11: -0.1260 T22: -0.0311 REMARK 3 T33: 0.0522 T12: -0.0134 REMARK 3 T13: 0.0078 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 3.3437 L22: 3.4478 REMARK 3 L33: 2.7390 L12: -2.3968 REMARK 3 L13: -1.6321 L23: 1.8819 REMARK 3 S TENSOR REMARK 3 S11: 0.1382 S12: -0.0279 S13: 0.6580 REMARK 3 S21: -0.1541 S22: 0.2339 S23: -0.3783 REMARK 3 S31: -0.2626 S32: 0.1986 S33: -0.3721 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5941 7.6485 -4.5163 REMARK 3 T TENSOR REMARK 3 T11: -0.0626 T22: 0.0047 REMARK 3 T33: 0.0584 T12: 0.0000 REMARK 3 T13: -0.0878 T23: 0.1317 REMARK 3 L TENSOR REMARK 3 L11: 2.9629 L22: 1.7014 REMARK 3 L33: 0.0653 L12: 0.6426 REMARK 3 L13: -0.3735 L23: 0.0877 REMARK 3 S TENSOR REMARK 3 S11: -0.0757 S12: 0.2913 S13: 0.0995 REMARK 3 S21: -0.1826 S22: 0.0546 S23: 0.4432 REMARK 3 S31: -0.0943 S32: 0.0099 S33: 0.0211 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3618 23.2890 -6.2604 REMARK 3 T TENSOR REMARK 3 T11: -0.0634 T22: -0.0216 REMARK 3 T33: -0.0792 T12: -0.0459 REMARK 3 T13: -0.0300 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.5212 L22: 3.1545 REMARK 3 L33: 0.7547 L12: -1.9669 REMARK 3 L13: -0.7496 L23: 0.4839 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: 0.0693 S13: 0.1884 REMARK 3 S21: -0.2276 S22: -0.0952 S23: -0.2161 REMARK 3 S31: -0.0177 S32: -0.0354 S33: -0.0152 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 224 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5408 5.6690 15.0568 REMARK 3 T TENSOR REMARK 3 T11: -0.0352 T22: -0.0105 REMARK 3 T33: -0.0956 T12: -0.0136 REMARK 3 T13: -0.0249 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.3811 L22: 2.6883 REMARK 3 L33: 3.1960 L12: 0.8132 REMARK 3 L13: -0.9941 L23: -0.6201 REMARK 3 S TENSOR REMARK 3 S11: 0.1408 S12: -0.1648 S13: 0.1400 REMARK 3 S21: 0.4378 S22: -0.0560 S23: -0.0281 REMARK 3 S31: -0.2621 S32: 0.1621 S33: -0.0848 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. PG4 MOLECULES FROM THE CRYSTALLIZATION CONDITION REMARK 3 HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. REMARK 4 REMARK 4 2R44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.54 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97929, 0.97905 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28915 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.013 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.350 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M SODIUM CHLORIDE, 50.0% REMARK 280 PEG 200, 0.1M NA/K PHOSPHATE PH 6.54, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.11333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.05667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.58500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.52833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.64167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. CRYSTAL PACKING ANALYSIS SUGGESTS A MONOMER REMARK 300 IN THE SOLUTION. SIZE EXCLUSION CHROMATOGRAPHY WITH REMARK 300 STATIC LIGHT SCATTERING SUGGESTS THAT A HEXAMER MAY BE REMARK 300 THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION BUT REMARK 300 IT MAY BE UNSTABLE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CE NZ REMARK 470 LYS A 18 CD CE NZ REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LYS A 67 NZ REMARK 470 HIS A 96 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 97 CE NZ REMARK 470 ASN A 99 CB CG OD1 ND2 REMARK 470 LYS A 104 NZ REMARK 470 GLU A 130 CD OE1 OE2 REMARK 470 GLU A 134 OE1 OE2 REMARK 470 LYS A 135 CD CE NZ REMARK 470 ILE A 139 CB CG1 CG2 CD1 REMARK 470 GLN A 204 CD OE1 NE2 REMARK 470 GLN A 206 OE1 NE2 REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 GLN A 316 CG CD OE1 NE2 REMARK 470 GLU A 319 CD OE1 OE2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 295 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 31 42.14 -142.40 REMARK 500 ASP A 141 -68.52 -92.23 REMARK 500 LEU A 249 63.52 -104.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 332 REMARK 610 PG4 A 333 REMARK 610 PG4 A 334 REMARK 610 PG4 A 335 REMARK 610 PG4 A 336 REMARK 610 PG4 A 337 REMARK 610 PG4 A 338 REMARK 610 PG4 A 339 REMARK 610 PG4 A 341 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 342 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 372359 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 2R44 A 1 330 UNP Q11YS1 Q11YS1_CYTH3 1 330 SEQADV 2R44 GLY A 0 UNP Q11YS1 EXPRESSION TAG SEQRES 1 A 331 GLY MSE GLU LEU LYS SER ALA GLU GLU LYS SER LEU TYR SEQRES 2 A 331 TYR ARG ASN LYS ILE LYS GLU VAL ILE ASP GLU VAL GLY SEQRES 3 A 331 LYS VAL VAL VAL GLY GLN LYS TYR MSE ILE ASN ARG LEU SEQRES 4 A 331 LEU ILE GLY ILE CYS THR GLY GLY HIS ILE LEU LEU GLU SEQRES 5 A 331 GLY VAL PRO GLY LEU ALA LYS THR LEU SER VAL ASN THR SEQRES 6 A 331 LEU ALA LYS THR MSE ASP LEU ASP PHE HIS ARG ILE GLN SEQRES 7 A 331 PHE THR PRO ASP LEU LEU PRO SER ASP LEU ILE GLY THR SEQRES 8 A 331 MSE ILE TYR ASN GLN HIS LYS GLY ASN PHE GLU VAL LYS SEQRES 9 A 331 LYS GLY PRO VAL PHE SER ASN PHE ILE LEU ALA ASP GLU SEQRES 10 A 331 VAL ASN ARG SER PRO ALA LYS VAL GLN SER ALA LEU LEU SEQRES 11 A 331 GLU CYS MSE GLN GLU LYS GLN VAL THR ILE GLY ASP THR SEQRES 12 A 331 THR TYR PRO LEU ASP ASN PRO PHE LEU VAL LEU ALA THR SEQRES 13 A 331 GLN ASN PRO VAL GLU GLN GLU GLY THR TYR PRO LEU PRO SEQRES 14 A 331 GLU ALA GLN VAL ASP ARG PHE MSE MSE LYS ILE HIS LEU SEQRES 15 A 331 THR TYR LEU ASP LYS GLU SER GLU LEU GLU VAL MSE ARG SEQRES 16 A 331 ARG VAL SER ASN MSE ASN PHE ASN TYR GLN VAL GLN LYS SEQRES 17 A 331 ILE VAL SER LYS ASN ASP VAL LEU GLU ILE ARG ASN GLU SEQRES 18 A 331 ILE ASN LYS VAL THR ILE SER GLU SER LEU GLU LYS TYR SEQRES 19 A 331 ILE ILE GLU LEU VAL PHE ALA THR ARG PHE PRO ALA GLU SEQRES 20 A 331 TYR GLY LEU GLU ALA GLU ALA SER TYR ILE LEU TYR GLY SEQRES 21 A 331 ALA SER THR ARG ALA ALA ILE ASN LEU ASN ARG VAL ALA SEQRES 22 A 331 LYS ALA MSE ALA PHE PHE ASN ASN ARG ASP TYR VAL LEU SEQRES 23 A 331 PRO GLU ASP ILE LYS GLU VAL ALA TYR ASP ILE LEU ASN SEQRES 24 A 331 HIS ARG ILE ILE LEU ASN TYR GLU ALA GLU ALA GLU GLY SEQRES 25 A 331 ILE SER THR ARG GLN ILE ILE GLU THR ILE LEU ARG LYS SEQRES 26 A 331 VAL ASN ILE THR LYS ALA MODRES 2R44 MSE A 1 MET SELENOMETHIONINE MODRES 2R44 MSE A 34 MET SELENOMETHIONINE MODRES 2R44 MSE A 69 MET SELENOMETHIONINE MODRES 2R44 MSE A 91 MET SELENOMETHIONINE MODRES 2R44 MSE A 132 MET SELENOMETHIONINE MODRES 2R44 MSE A 176 MET SELENOMETHIONINE MODRES 2R44 MSE A 177 MET SELENOMETHIONINE MODRES 2R44 MSE A 193 MET SELENOMETHIONINE MODRES 2R44 MSE A 199 MET SELENOMETHIONINE MODRES 2R44 MSE A 275 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 34 13 HET MSE A 69 8 HET MSE A 91 8 HET MSE A 132 8 HET MSE A 176 13 HET MSE A 177 8 HET MSE A 193 8 HET MSE A 199 8 HET MSE A 275 8 HET PO4 A 331 5 HET PG4 A 332 7 HET PG4 A 333 7 HET PG4 A 334 7 HET PG4 A 335 7 HET PG4 A 336 7 HET PG4 A 337 7 HET PG4 A 338 7 HET PG4 A 339 10 HET PG4 A 340 13 HET PG4 A 341 9 HET PG4 A 342 13 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 PO4 O4 P 3- FORMUL 3 PG4 11(C8 H18 O5) FORMUL 14 HOH *111(H2 O) HELIX 1 1 MSE A 1 GLY A 25 1 25 HELIX 2 2 GLN A 31 GLY A 45 1 15 HELIX 3 3 GLY A 55 MSE A 69 1 15 HELIX 4 4 LEU A 83 ILE A 88 1 6 HELIX 5 5 GLU A 116 SER A 120 5 5 HELIX 6 6 PRO A 121 LYS A 135 1 15 HELIX 7 7 PRO A 168 ASP A 173 1 6 HELIX 8 8 ASP A 185 ASN A 198 1 14 HELIX 9 9 SER A 210 LYS A 223 1 14 HELIX 10 10 SER A 227 PHE A 243 1 17 HELIX 11 11 PRO A 244 GLY A 248 5 5 HELIX 12 12 LEU A 249 TYR A 255 1 7 HELIX 13 13 SER A 261 ASN A 279 1 19 HELIX 14 14 LEU A 285 ASN A 298 1 14 HELIX 15 15 ASN A 304 GLU A 310 1 7 HELIX 16 16 SER A 313 VAL A 325 1 13 SHEET 1 A 5 PHE A 73 GLN A 77 0 SHEET 2 A 5 PHE A 111 ASP A 115 1 O LEU A 113 N ILE A 76 SHEET 3 A 5 LEU A 151 GLN A 156 1 O LEU A 153 N ILE A 112 SHEET 4 A 5 ILE A 48 GLU A 51 1 N LEU A 50 O ALA A 154 SHEET 5 A 5 MSE A 177 HIS A 180 1 O ILE A 179 N GLU A 51 SHEET 1 B 2 GLY A 89 ASN A 94 0 SHEET 2 B 2 ASN A 99 LYS A 104 -1 O LYS A 103 N THR A 90 SHEET 1 C 2 GLN A 136 ILE A 139 0 SHEET 2 C 2 THR A 142 PRO A 145 -1 O TYR A 144 N VAL A 137 SHEET 1 D 2 ILE A 256 TYR A 258 0 SHEET 2 D 2 ILE A 302 LEU A 303 -1 O ILE A 302 N LEU A 257 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C TYR A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N ILE A 35 1555 1555 1.32 LINK C THR A 68 N MSE A 69 1555 1555 1.34 LINK C MSE A 69 N ASP A 70 1555 1555 1.34 LINK C THR A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N ILE A 92 1555 1555 1.33 LINK C CYS A 131 N MSE A 132 1555 1555 1.34 LINK C MSE A 132 N GLN A 133 1555 1555 1.32 LINK C PHE A 175 N MSE A 176 1555 1555 1.32 LINK C MSE A 176 N MSE A 177 1555 1555 1.34 LINK C MSE A 177 N LYS A 178 1555 1555 1.33 LINK C VAL A 192 N MSE A 193 1555 1555 1.34 LINK C MSE A 193 N ARG A 194 1555 1555 1.33 LINK C ASN A 198 N MSE A 199 1555 1555 1.32 LINK C MSE A 199 N ASN A 200 1555 1555 1.34 LINK C ALA A 274 N MSE A 275 1555 1555 1.34 LINK C MSE A 275 N ALA A 276 1555 1555 1.33 CISPEP 1 ASN A 148 PRO A 149 0 1.24 SITE 1 AC1 8 TYR A 13 ASN A 212 ASP A 213 GLU A 216 SITE 2 AC1 8 GLY A 248 LYS A 324 PG4 A 341 HOH A 391 SITE 1 AC2 6 GLU A 51 LYS A 178 HIS A 180 ASN A 298 SITE 2 AC2 6 THR A 314 HOH A 427 SITE 1 AC3 3 LYS A 290 ILE A 327 PG4 A 338 SITE 1 AC4 6 GLY A 0 THR A 225 ILE A 226 SER A 227 SITE 2 AC4 6 TYR A 283 HOH A 358 SITE 1 AC5 5 MSE A 275 ASN A 279 GLU A 287 ASP A 288 SITE 2 AC5 5 PG4 A 339 SITE 1 AC6 5 ASN A 200 GLU A 216 ASN A 219 GLY A 248 SITE 2 AC6 5 GLU A 250 SITE 1 AC7 4 ASP A 70 LYS A 207 THR A 320 ARG A 323 SITE 1 AC8 3 LYS A 290 LEU A 322 PG4 A 333 SITE 1 AC9 5 ILE A 21 ASN A 36 MSE A 275 GLU A 291 SITE 2 AC9 5 PG4 A 335 SITE 1 BC1 4 LYS A 186 GLU A 236 GLU A 246 TYR A 247 SITE 1 BC2 3 GLU A 8 TYR A 13 PO4 A 331 SITE 1 BC3 5 VAL A 53 GLY A 55 ALA A 57 LYS A 58 SITE 2 BC3 5 LEU A 184 CRYST1 120.780 120.780 51.170 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008280 0.004780 0.000000 0.00000 SCALE2 0.000000 0.009560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019540 0.00000