HEADER UNKNOWN FUNCTION 31-AUG-07 2R4I TITLE CRYSTAL STRUCTURE OF A NTF2-LIKE PROTEIN (CHU_1428) FROM CYTOPHAGA TITLE 2 HUTCHINSONII ATCC 33406 AT 1.60 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYTOPHAGA HUTCHINSONII ATCC 33406; SOURCE 3 ORGANISM_TAXID: 269798; SOURCE 4 STRAIN: NCIMB 9469; SOURCE 5 GENE: YP_678039.1, CHU_1428; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NTF2-LIKE PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2R4I 1 REMARK SEQADV REVDAT 6 24-JUL-19 2R4I 1 REMARK LINK REVDAT 5 25-OCT-17 2R4I 1 REMARK REVDAT 4 13-JUL-11 2R4I 1 VERSN REVDAT 3 28-JUL-10 2R4I 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2R4I 1 VERSN REVDAT 1 02-OCT-07 2R4I 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF NTF2-LIKE PROTEIN OF UNKNOWN FUNCTION JRNL TITL 2 (YP_678039.1) FROM CYTOPHAGA HUTCHINSONII ATCC 33406 AT 1.60 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 66987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3377 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4603 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 275 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3752 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 430 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.291 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4022 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2585 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5500 ; 1.775 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6370 ; 1.367 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 522 ; 4.707 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;34.933 ;25.028 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 706 ;10.608 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ; 9.118 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 676 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4438 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 765 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 645 ; 0.191 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2672 ; 0.166 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1895 ; 0.161 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 2001 ; 0.085 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 595 ; 0.158 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.033 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.125 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 65 ; 0.209 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 47 ; 0.140 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2589 ; 1.907 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1005 ; 0.511 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4063 ; 2.754 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1676 ; 4.593 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1413 ; 6.029 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): 52.8139 16.7518 31.3075 REMARK 3 T TENSOR REMARK 3 T11: -0.0138 T22: -0.0928 REMARK 3 T33: -0.0561 T12: 0.0052 REMARK 3 T13: 0.0006 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.7287 L22: 1.0986 REMARK 3 L33: 0.9724 L12: 0.2189 REMARK 3 L13: -0.3009 L23: -0.3975 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: 0.0892 S13: 0.0404 REMARK 3 S21: -0.1135 S22: 0.0383 S23: 0.0820 REMARK 3 S31: 0.0413 S32: -0.1880 S33: -0.0580 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 121 REMARK 3 ORIGIN FOR THE GROUP (A): 74.6494 13.6911 34.6854 REMARK 3 T TENSOR REMARK 3 T11: -0.0329 T22: -0.0510 REMARK 3 T33: 0.0382 T12: 0.0082 REMARK 3 T13: 0.0001 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.7318 L22: 1.6788 REMARK 3 L33: 1.1501 L12: -0.3191 REMARK 3 L13: -0.1924 L23: 0.2972 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: -0.0954 S13: 0.0001 REMARK 3 S21: 0.0553 S22: -0.0112 S23: -0.3570 REMARK 3 S31: 0.0376 S32: 0.2404 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 121 REMARK 3 ORIGIN FOR THE GROUP (A): 64.4846 24.9488 1.0799 REMARK 3 T TENSOR REMARK 3 T11: 0.0158 T22: 0.0441 REMARK 3 T33: -0.0256 T12: -0.0063 REMARK 3 T13: 0.0264 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.9663 L22: 1.6591 REMARK 3 L33: 1.7972 L12: 0.1342 REMARK 3 L13: 0.2478 L23: -0.6657 REMARK 3 S TENSOR REMARK 3 S11: -0.0943 S12: 0.2822 S13: -0.1819 REMARK 3 S21: -0.2723 S22: 0.0762 S23: -0.1451 REMARK 3 S31: 0.3548 S32: 0.0627 S33: 0.0181 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 122 REMARK 3 ORIGIN FOR THE GROUP (A): 61.1666 44.2931 9.9443 REMARK 3 T TENSOR REMARK 3 T11: -0.0664 T22: 0.0151 REMARK 3 T33: -0.0411 T12: 0.0140 REMARK 3 T13: 0.0039 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 1.0123 L22: 0.6487 REMARK 3 L33: 1.1406 L12: 0.2674 REMARK 3 L13: 0.0834 L23: 0.1120 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.0210 S13: 0.1320 REMARK 3 S21: 0.0754 S22: 0.0373 S23: 0.0327 REMARK 3 S31: -0.0910 S32: -0.0408 S33: -0.0245 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. ONE CITRATE ANION, EIGHT ISOPROPYL ALCOHOL, AND TWO GLYCEROL REMARK 3 MOLECULE(S) HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. REMARK 4 REMARK 4 2R4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97926, 0.97904 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67050 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 28.843 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 5.0% GLYCEROL, 19.0% REMARK 280 ISOPROPANOL, 19.0% PEG 4000, 0.1M CITRATE PH 5.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.41500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.83000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.84500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.83000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.41500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.84500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS REMARK 300 THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4250 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 0 REMARK 465 GLY B 122 REMARK 465 GLY C 0 REMARK 465 MSE C 1 REMARK 465 GLY C 122 REMARK 465 GLY D 0 REMARK 465 MSE D 1 REMARK 465 ASN D 2 REMARK 465 GLN D 3 REMARK 465 ARG D 4 REMARK 465 ASP D 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS B 12 CD CE NZ REMARK 470 LYS B 13 NZ REMARK 470 LYS B 57 CD CE NZ REMARK 470 LYS C 12 CD CE NZ REMARK 470 GLU C 24 CD OE1 OE2 REMARK 470 GLU C 47 CD OE1 OE2 REMARK 470 LYS C 57 CB CG CD CE NZ REMARK 470 ILE C 58 CG2 CD1 REMARK 470 ALA C 59 CB REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 470 TYR C 89 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 91 CB CG CD OE1 OE2 REMARK 470 LYS D 12 CD CE NZ REMARK 470 GLU D 24 CD OE1 OE2 REMARK 470 LYS D 86 NZ REMARK 470 GLU D 91 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 71 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 4 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 74 -119.61 55.19 REMARK 500 HIS A 74 -121.42 57.74 REMARK 500 MSE A 90 -127.16 62.34 REMARK 500 ASP A 95 63.66 -162.33 REMARK 500 HIS B 74 -112.15 56.83 REMARK 500 MSE B 90 -125.92 58.10 REMARK 500 ASP B 95 75.07 -156.02 REMARK 500 HIS C 74 -113.04 62.36 REMARK 500 MSE C 90 -118.67 59.44 REMARK 500 ASP C 95 61.75 -162.53 REMARK 500 HIS D 74 -117.87 59.13 REMARK 500 ASP D 95 67.16 -158.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 127 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA C 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA D 123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 126 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 378214 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 2R4I A 1 122 UNP Q11V67 Q11V67_CYTH3 1 122 DBREF 2R4I B 1 122 UNP Q11V67 Q11V67_CYTH3 1 122 DBREF 2R4I C 1 122 UNP Q11V67 Q11V67_CYTH3 1 122 DBREF 2R4I D 1 122 UNP Q11V67 Q11V67_CYTH3 1 122 SEQADV 2R4I GLY A 0 UNP Q11V67 EXPRESSION TAG SEQADV 2R4I GLY B 0 UNP Q11V67 EXPRESSION TAG SEQADV 2R4I GLY C 0 UNP Q11V67 EXPRESSION TAG SEQADV 2R4I GLY D 0 UNP Q11V67 EXPRESSION TAG SEQRES 1 A 123 GLY MSE ASN GLN ARG ASP VAL ILE LEU ASP CYS GLU LYS SEQRES 2 A 123 LYS LEU LEU THR ALA ILE GLN ASN ASN ASP VAL GLU SER SEQRES 3 A 123 LEU GLU VAL LEU LEU HIS ASP ASP LEU LEU PHE ILE ILE SEQRES 4 A 123 PRO SER GLY GLU THR VAL THR LYS GLU THR ASP ILE ALA SEQRES 5 A 123 ALA TYR SER SER GLY LYS ILE ALA LEU ARG ALA VAL VAL SEQRES 6 A 123 PRO SER ASP TYR ILE ILE ARG ILE ILE HIS ASP THR VAL SEQRES 7 A 123 VAL VAL SER VAL ASN ILE GLU ILE LYS GLY GLU TYR MSE SEQRES 8 A 123 GLU HIS THR LEU ASP ASN THR PHE ARG TYR LEU ARG VAL SEQRES 9 A 123 TRP LYS LEU PHE ASP GLY ASN TRP LYS VAL ILE ALA GLY SEQRES 10 A 123 SER CYS THR ALA ILE GLY SEQRES 1 B 123 GLY MSE ASN GLN ARG ASP VAL ILE LEU ASP CYS GLU LYS SEQRES 2 B 123 LYS LEU LEU THR ALA ILE GLN ASN ASN ASP VAL GLU SER SEQRES 3 B 123 LEU GLU VAL LEU LEU HIS ASP ASP LEU LEU PHE ILE ILE SEQRES 4 B 123 PRO SER GLY GLU THR VAL THR LYS GLU THR ASP ILE ALA SEQRES 5 B 123 ALA TYR SER SER GLY LYS ILE ALA LEU ARG ALA VAL VAL SEQRES 6 B 123 PRO SER ASP TYR ILE ILE ARG ILE ILE HIS ASP THR VAL SEQRES 7 B 123 VAL VAL SER VAL ASN ILE GLU ILE LYS GLY GLU TYR MSE SEQRES 8 B 123 GLU HIS THR LEU ASP ASN THR PHE ARG TYR LEU ARG VAL SEQRES 9 B 123 TRP LYS LEU PHE ASP GLY ASN TRP LYS VAL ILE ALA GLY SEQRES 10 B 123 SER CYS THR ALA ILE GLY SEQRES 1 C 123 GLY MSE ASN GLN ARG ASP VAL ILE LEU ASP CYS GLU LYS SEQRES 2 C 123 LYS LEU LEU THR ALA ILE GLN ASN ASN ASP VAL GLU SER SEQRES 3 C 123 LEU GLU VAL LEU LEU HIS ASP ASP LEU LEU PHE ILE ILE SEQRES 4 C 123 PRO SER GLY GLU THR VAL THR LYS GLU THR ASP ILE ALA SEQRES 5 C 123 ALA TYR SER SER GLY LYS ILE ALA LEU ARG ALA VAL VAL SEQRES 6 C 123 PRO SER ASP TYR ILE ILE ARG ILE ILE HIS ASP THR VAL SEQRES 7 C 123 VAL VAL SER VAL ASN ILE GLU ILE LYS GLY GLU TYR MSE SEQRES 8 C 123 GLU HIS THR LEU ASP ASN THR PHE ARG TYR LEU ARG VAL SEQRES 9 C 123 TRP LYS LEU PHE ASP GLY ASN TRP LYS VAL ILE ALA GLY SEQRES 10 C 123 SER CYS THR ALA ILE GLY SEQRES 1 D 123 GLY MSE ASN GLN ARG ASP VAL ILE LEU ASP CYS GLU LYS SEQRES 2 D 123 LYS LEU LEU THR ALA ILE GLN ASN ASN ASP VAL GLU SER SEQRES 3 D 123 LEU GLU VAL LEU LEU HIS ASP ASP LEU LEU PHE ILE ILE SEQRES 4 D 123 PRO SER GLY GLU THR VAL THR LYS GLU THR ASP ILE ALA SEQRES 5 D 123 ALA TYR SER SER GLY LYS ILE ALA LEU ARG ALA VAL VAL SEQRES 6 D 123 PRO SER ASP TYR ILE ILE ARG ILE ILE HIS ASP THR VAL SEQRES 7 D 123 VAL VAL SER VAL ASN ILE GLU ILE LYS GLY GLU TYR MSE SEQRES 8 D 123 GLU HIS THR LEU ASP ASN THR PHE ARG TYR LEU ARG VAL SEQRES 9 D 123 TRP LYS LEU PHE ASP GLY ASN TRP LYS VAL ILE ALA GLY SEQRES 10 D 123 SER CYS THR ALA ILE GLY MODRES 2R4I MSE A 1 MET SELENOMETHIONINE MODRES 2R4I MSE A 90 MET SELENOMETHIONINE MODRES 2R4I MSE B 1 MET SELENOMETHIONINE MODRES 2R4I MSE B 90 MET SELENOMETHIONINE MODRES 2R4I MSE C 90 MET SELENOMETHIONINE MODRES 2R4I MSE D 90 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 90 8 HET MSE B 1 8 HET MSE B 90 8 HET MSE C 90 8 HET MSE D 90 13 HET CIT A 123 13 HET IPA A 124 4 HET IPA A 125 4 HET IPA A 126 4 HET IPA A 127 4 HET IPA B 123 4 HET IPA B 124 4 HET GOL B 125 6 HET GOL B 126 6 HET IPA C 123 4 HET IPA D 123 4 HETNAM MSE SELENOMETHIONINE HETNAM CIT CITRIC ACID HETNAM IPA ISOPROPYL ALCOHOL HETNAM GOL GLYCEROL HETSYN IPA 2-PROPANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 5 CIT C6 H8 O7 FORMUL 6 IPA 8(C3 H8 O) FORMUL 12 GOL 2(C3 H8 O3) FORMUL 16 HOH *430(H2 O) HELIX 1 1 ASN A 2 LEU A 8 1 7 HELIX 2 2 LEU A 8 ASN A 21 1 14 HELIX 3 3 ASP A 22 LEU A 29 1 8 HELIX 4 4 THR A 45 SER A 55 1 11 HELIX 5 5 ASN B 2 ASN B 20 1 19 HELIX 6 6 ASP B 22 LEU B 29 1 8 HELIX 7 7 LYS B 46 SER B 55 1 10 HELIX 8 8 ASN C 2 ASN C 20 1 19 HELIX 9 9 ASP C 22 LEU C 29 1 8 HELIX 10 10 THR C 45 SER C 55 1 11 HELIX 11 11 ILE D 7 ASN D 21 1 15 HELIX 12 12 ASP D 22 LEU D 29 1 8 HELIX 13 13 LYS D 46 SER D 55 1 10 SHEET 1 A 6 THR A 43 VAL A 44 0 SHEET 2 A 6 LEU A 30 ILE A 37 -1 N PHE A 36 O VAL A 44 SHEET 3 A 6 ASN A 110 ALA A 120 1 O VAL A 113 N HIS A 31 SHEET 4 A 6 HIS A 92 PHE A 107 -1 N VAL A 103 O ILE A 114 SHEET 5 A 6 THR A 76 TYR A 89 -1 N GLY A 87 O LEU A 94 SHEET 6 A 6 ILE A 58 ILE A 73 -1 N ILE A 73 O THR A 76 SHEET 1 B 6 THR B 43 THR B 45 0 SHEET 2 B 6 LEU B 30 ILE B 37 -1 N PHE B 36 O VAL B 44 SHEET 3 B 6 ASN B 110 ILE B 121 1 O VAL B 113 N HIS B 31 SHEET 4 B 6 HIS B 92 PHE B 107 -1 N VAL B 103 O ILE B 114 SHEET 5 B 6 THR B 76 TYR B 89 -1 N TYR B 89 O HIS B 92 SHEET 6 B 6 ILE B 58 ILE B 73 -1 N ILE B 73 O THR B 76 SHEET 1 C 6 THR C 43 VAL C 44 0 SHEET 2 C 6 LEU C 30 ILE C 37 -1 N PHE C 36 O VAL C 44 SHEET 3 C 6 ASN C 110 ILE C 121 1 O VAL C 113 N HIS C 31 SHEET 4 C 6 HIS C 92 PHE C 107 -1 N VAL C 103 O ILE C 114 SHEET 5 C 6 THR C 76 TYR C 89 -1 N GLY C 87 O LEU C 94 SHEET 6 C 6 ILE C 58 ILE C 73 -1 N ALA C 59 O GLU C 88 SHEET 1 D 6 THR D 43 THR D 45 0 SHEET 2 D 6 LEU D 30 ILE D 37 -1 N PHE D 36 O VAL D 44 SHEET 3 D 6 ASN D 110 ALA D 120 1 O VAL D 113 N HIS D 31 SHEET 4 D 6 HIS D 92 PHE D 107 -1 N VAL D 103 O ILE D 114 SHEET 5 D 6 THR D 76 TYR D 89 -1 N GLY D 87 O LEU D 94 SHEET 6 D 6 ILE D 58 ILE D 73 -1 N ARG D 71 O VAL D 78 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ASN A 2 1555 1555 1.33 LINK C TYR A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N GLU A 91 1555 1555 1.35 LINK C MSE B 1 N ASN B 2 1555 1555 1.34 LINK C TYR B 89 N MSE B 90 1555 1555 1.34 LINK C MSE B 90 N GLU B 91 1555 1555 1.33 LINK C TYR C 89 N MSE C 90 1555 1555 1.34 LINK C MSE C 90 N GLU C 91 1555 1555 1.34 LINK C TYR D 89 N MSE D 90 1555 1555 1.34 LINK C MSE D 90 N GLU D 91 1555 1555 1.34 SITE 1 AC1 10 ARG A 4 LYS A 12 SER A 66 ASP A 67 SITE 2 AC1 10 TYR A 68 HOH A 169 HOH A 214 HOH A 235 SITE 3 AC1 10 LYS D 57 HOH D 228 SITE 1 AC2 5 ILE A 7 LEU A 8 CYS A 10 GLU A 11 SITE 2 AC2 5 IPA A 125 SITE 1 AC3 6 ILE A 7 TRP A 111 IPA A 124 HOH A 170 SITE 2 AC3 6 HOH A 238 SER B 40 SITE 1 AC4 2 PRO A 39 HOH A 186 SITE 1 AC5 3 ASP A 49 TYR A 53 HOH A 141 SITE 1 AC6 3 ASP C 49 TYR C 53 HOH C 214 SITE 1 AC7 4 HIS B 31 PHE B 107 LYS B 112 HOH B 141 SITE 1 AC8 6 GLN D 19 ASN D 21 ALA D 59 LEU D 60 SITE 2 AC8 6 HOH D 129 HOH D 155 SITE 1 AC9 3 MSE A 1 PHE B 98 TYR B 100 SITE 1 BC1 7 PHE B 36 ASP B 49 TYR B 53 TYR B 100 SITE 2 BC1 7 ARG B 102 HOH B 227 HOH B 228 SITE 1 BC2 8 ARG A 71 ASP B 32 THR B 45 LYS B 46 SITE 2 BC2 8 GLU B 47 HOH B 129 HOH B 144 HOH B 222 CRYST1 56.830 57.690 157.660 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017600 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006340 0.00000