HEADER TRANSPORT PROTEIN 02-SEP-07 2R51 TITLE CRYSTAL STRUCTURE OF MOUSE VPS26B COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 26B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 7-336; COMPND 5 SYNONYM: VESICLE PROTEIN SORTING 26B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 GENE: VPS26B; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMWKANH6 MVPS26B KEYWDS RETROMER, FIBRONECTIN III, ARRESTIN DOMAIN, MEMBRANE, KEYWDS 2 PHOSPHORYLATION, PROTEIN TRANSPORT, TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.J.OWEN,R.D.TEASDALE,B.M.COLLINS REVDAT 3 13-JUL-11 2R51 1 VERSN REVDAT 2 24-FEB-09 2R51 1 VERSN REVDAT 1 15-JUL-08 2R51 0 JRNL AUTH B.M.COLLINS,S.J.NORWOOD,M.C.KERR,D.MAHONY,M.N.SEAMAN, JRNL AUTH 2 R.D.TEASDALE,D.J.OWEN JRNL TITL STRUCTURE OF VPS26B AND MAPPING OF ITS INTERACTION WITH THE JRNL TITL 2 RETROMER PROTEIN COMPLEX. JRNL REF TRAFFIC V. 9 366 2008 JRNL REFN ISSN 1398-9219 JRNL PMID 18088321 JRNL DOI 10.1111/J.1600-0854.2007.00688.X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 31538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1682 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2216 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2391 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.02000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : 0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.268 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2440 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3284 ; 1.636 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 287 ; 7.378 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;36.031 ;23.790 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 467 ;18.298 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.158 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 357 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1827 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 881 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1572 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 193 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.304 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1479 ; 1.310 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2329 ; 1.831 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1086 ; 2.706 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 955 ; 3.962 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 51.5760 63.2750 11.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: -0.2356 REMARK 3 T33: -0.1084 T12: -0.0111 REMARK 3 T13: 0.0505 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.0540 L22: 4.6893 REMARK 3 L33: 0.3667 L12: 0.0778 REMARK 3 L13: 0.0444 L23: 0.3535 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.1342 S13: 0.0792 REMARK 3 S21: -0.6355 S22: 0.0691 S23: -0.2102 REMARK 3 S31: -0.0892 S32: -0.0320 S33: -0.0548 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 296 REMARK 3 ORIGIN FOR THE GROUP (A): 60.3710 26.0820 11.9090 REMARK 3 T TENSOR REMARK 3 T11: 0.0302 T22: -0.2880 REMARK 3 T33: 0.0146 T12: 0.0056 REMARK 3 T13: 0.0531 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.8553 L22: 1.6258 REMARK 3 L33: 1.2076 L12: -0.7725 REMARK 3 L13: -1.0018 L23: 0.7265 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: -0.1554 S13: 0.0239 REMARK 3 S21: -0.1039 S22: 0.0525 S23: -0.1457 REMARK 3 S31: 0.0921 S32: 0.0320 S33: 0.0312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R51 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-07. REMARK 100 THE RCSB ID CODE IS RCSB044433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9816 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33530 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 78.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.600 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 0.01100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M NAH2PO4, 0.4 M KH2PO4, 50 MM REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.37750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.94800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.52350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.94800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.37750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.52350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.37750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.52350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.94800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.52350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.37750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.94800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 90.75500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 62.52350 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 537 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 MSE A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 8 REMARK 465 ASP A 297 REMARK 465 ILE A 298 REMARK 465 VAL A 299 REMARK 465 ARG A 300 REMARK 465 LYS A 301 REMARK 465 SER A 302 REMARK 465 MSE A 303 REMARK 465 SER A 304 REMARK 465 HIS A 305 REMARK 465 GLN A 306 REMARK 465 ALA A 307 REMARK 465 ALA A 308 REMARK 465 ILE A 309 REMARK 465 ALA A 310 REMARK 465 SER A 311 REMARK 465 GLN A 312 REMARK 465 ARG A 313 REMARK 465 PHE A 314 REMARK 465 GLU A 315 REMARK 465 GLY A 316 REMARK 465 THR A 317 REMARK 465 THR A 318 REMARK 465 SER A 319 REMARK 465 LEU A 320 REMARK 465 GLY A 321 REMARK 465 GLU A 322 REMARK 465 VAL A 323 REMARK 465 ARG A 324 REMARK 465 THR A 325 REMARK 465 PRO A 326 REMARK 465 GLY A 327 REMARK 465 GLN A 328 REMARK 465 LEU A 329 REMARK 465 SER A 330 REMARK 465 ASP A 331 REMARK 465 ASN A 332 REMARK 465 ASN A 333 REMARK 465 SER A 334 REMARK 465 ARG A 335 REMARK 465 GLN A 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 533 O HOH A 554 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 124 CB - CA - C ANGL. DEV. = -15.4 DEGREES REMARK 500 VAL A 124 CG1 - CB - CG2 ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 138 -93.52 -73.42 REMARK 500 PRO A 156 -82.56 -19.20 REMARK 500 CYS A 171 -37.58 -135.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 421 DISTANCE = 5.03 ANGSTROMS DBREF 2R51 A 7 336 UNP Q8C0E2 VP26B_MOUSE 7 336 SEQADV 2R51 MSE A -3 UNP Q8C0E2 EXPRESSION TAG SEQADV 2R51 GLY A -2 UNP Q8C0E2 EXPRESSION TAG SEQADV 2R51 SER A -1 UNP Q8C0E2 EXPRESSION TAG SEQADV 2R51 HIS A 0 UNP Q8C0E2 EXPRESSION TAG SEQADV 2R51 HIS A 1 UNP Q8C0E2 EXPRESSION TAG SEQADV 2R51 HIS A 2 UNP Q8C0E2 EXPRESSION TAG SEQADV 2R51 HIS A 3 UNP Q8C0E2 EXPRESSION TAG SEQADV 2R51 HIS A 4 UNP Q8C0E2 EXPRESSION TAG SEQADV 2R51 HIS A 5 UNP Q8C0E2 EXPRESSION TAG SEQADV 2R51 MSE A 6 UNP Q8C0E2 EXPRESSION TAG SEQRES 1 A 340 MSE GLY SER HIS HIS HIS HIS HIS HIS MSE GLY GLN SER SEQRES 2 A 340 VAL GLU VAL GLU ILE LEU LEU ASN ASP ALA GLU SER ARG SEQRES 3 A 340 LYS ARG ALA GLU HIS LYS THR GLU ASP GLY LYS LYS GLU SEQRES 4 A 340 LYS TYR PHE LEU PHE TYR ASP GLY GLU THR VAL SER GLY SEQRES 5 A 340 LYS VAL SER LEU SER LEU LYS ASN PRO ASN LYS ARG LEU SEQRES 6 A 340 GLU HIS GLN GLY ILE LYS ILE GLU PHE ILE GLY GLN ILE SEQRES 7 A 340 GLU LEU TYR TYR ASP ARG GLY ASN HIS HIS GLU PHE VAL SEQRES 8 A 340 SER LEU VAL LYS ASP LEU ALA ARG PRO GLY GLU ILE THR SEQRES 9 A 340 GLN SER GLN ALA PHE ASP PHE GLU PHE THR HIS VAL GLU SEQRES 10 A 340 LYS PRO TYR GLU SER TYR THR GLY GLN ASN VAL LYS LEU SEQRES 11 A 340 ARG TYR PHE LEU ARG ALA THR ILE SER ARG ARG LEU ASN SEQRES 12 A 340 ASP VAL VAL LYS GLU MSE ASP ILE VAL VAL HIS THR LEU SEQRES 13 A 340 SER THR TYR PRO GLU LEU ASN SER SER ILE LYS MSE GLU SEQRES 14 A 340 VAL GLY ILE GLU ASP CYS LEU HIS ILE GLU PHE GLU TYR SEQRES 15 A 340 ASN LYS SER LYS TYR HIS LEU LYS ASP VAL ILE VAL GLY SEQRES 16 A 340 LYS ILE TYR PHE LEU LEU VAL ARG ILE LYS ILE LYS HIS SEQRES 17 A 340 MSE GLU ILE ASP ILE ILE LYS ARG GLU THR THR GLY THR SEQRES 18 A 340 GLY PRO ASN VAL TYR HIS GLU ASN ASP THR ILE ALA LYS SEQRES 19 A 340 TYR GLU ILE MSE ASP GLY ALA PRO VAL ARG GLY GLU SER SEQRES 20 A 340 ILE PRO ILE ARG LEU PHE LEU ALA GLY TYR GLU LEU THR SEQRES 21 A 340 PRO THR MSE ARG ASP ILE ASN LYS LYS PHE SER VAL ARG SEQRES 22 A 340 TYR TYR LEU ASN LEU VAL LEU ILE ASP GLU GLU GLU ARG SEQRES 23 A 340 ARG TYR PHE LYS GLN GLN GLU VAL VAL LEU TRP ARG LYS SEQRES 24 A 340 GLY ASP ILE VAL ARG LYS SER MSE SER HIS GLN ALA ALA SEQRES 25 A 340 ILE ALA SER GLN ARG PHE GLU GLY THR THR SER LEU GLY SEQRES 26 A 340 GLU VAL ARG THR PRO GLY GLN LEU SER ASP ASN ASN SER SEQRES 27 A 340 ARG GLN MODRES 2R51 MSE A 145 MET SELENOMETHIONINE MODRES 2R51 MSE A 164 MET SELENOMETHIONINE MODRES 2R51 MSE A 205 MET SELENOMETHIONINE MODRES 2R51 MSE A 234 MET SELENOMETHIONINE MODRES 2R51 MSE A 259 MET SELENOMETHIONINE HET MSE A 145 8 HET MSE A 164 8 HET MSE A 205 8 HET MSE A 234 8 HET MSE A 259 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 HOH *249(H2 O) HELIX 1 1 TYR A 78 ARG A 80 5 3 HELIX 2 2 ALA A 251 TYR A 253 5 3 SHEET 1 A 3 VAL A 10 LEU A 16 0 SHEET 2 A 3 VAL A 46 LEU A 54 -1 O LYS A 49 N LEU A 15 SHEET 3 A 3 GLN A 103 PHE A 109 -1 O GLN A 103 N LEU A 52 SHEET 1 B 6 ARG A 24 LYS A 28 0 SHEET 2 B 6 LYS A 34 TYR A 41 -1 O TYR A 37 N ALA A 25 SHEET 3 B 6 VAL A 141 HIS A 150 1 O VAL A 148 N PHE A 40 SHEET 4 B 6 VAL A 124 ILE A 134 -1 N ALA A 132 O LYS A 143 SHEET 5 B 6 ILE A 66 LEU A 76 -1 N GLU A 75 O LYS A 125 SHEET 6 B 6 HIS A 84 ALA A 94 -1 O LEU A 93 N ILE A 66 SHEET 1 C 5 ARG A 24 LYS A 28 0 SHEET 2 C 5 LYS A 34 TYR A 41 -1 O TYR A 37 N ALA A 25 SHEET 3 C 5 VAL A 141 HIS A 150 1 O VAL A 148 N PHE A 40 SHEET 4 C 5 VAL A 124 ILE A 134 -1 N ALA A 132 O LYS A 143 SHEET 5 C 5 TYR A 119 THR A 120 -1 N TYR A 119 O LEU A 126 SHEET 1 D 2 LEU A 61 HIS A 63 0 SHEET 2 D 2 GLY A 97 ILE A 99 -1 O ILE A 99 N LEU A 61 SHEET 1 E 4 ILE A 162 ILE A 168 0 SHEET 2 E 4 LEU A 172 TYR A 178 -1 O PHE A 176 N MSE A 164 SHEET 3 E 4 VAL A 188 VAL A 198 -1 O TYR A 194 N GLU A 175 SHEET 4 E 4 SER A 243 PHE A 249 -1 O ILE A 246 N GLY A 191 SHEET 1 F 5 LYS A 182 HIS A 184 0 SHEET 2 F 5 ARG A 283 TRP A 293 1 O VAL A 291 N TYR A 183 SHEET 3 F 5 PHE A 266 ASP A 278 -1 N LEU A 272 O GLN A 288 SHEET 4 F 5 ILE A 202 THR A 217 -1 N ARG A 212 O ARG A 269 SHEET 5 F 5 ASN A 220 ASP A 235 -1 O TYR A 231 N ILE A 207 SHEET 1 G 4 LYS A 182 HIS A 184 0 SHEET 2 G 4 ARG A 283 TRP A 293 1 O VAL A 291 N TYR A 183 SHEET 3 G 4 PHE A 266 ASP A 278 -1 N LEU A 272 O GLN A 288 SHEET 4 G 4 MSE A 259 ILE A 262 -1 N ILE A 262 O PHE A 266 LINK C GLU A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N ASP A 146 1555 1555 1.32 LINK C LYS A 163 N MSE A 164 1555 1555 1.33 LINK C MSE A 164 N GLU A 165 1555 1555 1.33 LINK C HIS A 204 N MSE A 205 1555 1555 1.34 LINK C MSE A 205 N GLU A 206 1555 1555 1.34 LINK C ILE A 233 N MSE A 234 1555 1555 1.33 LINK C MSE A 234 N ASP A 235 1555 1555 1.33 LINK C THR A 258 N MSE A 259 1555 1555 1.33 LINK C MSE A 259 N ARG A 260 1555 1555 1.32 CISPEP 1 PRO A 156 GLU A 157 0 -23.63 CRYST1 90.755 125.047 99.896 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011019 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010010 0.00000