HEADER TRANSCRIPTION 03-SEP-07 2R58 TITLE CRYSTAL STRUCTURE OF THE TWO MBT REPEATS FROM SEX-COMB ON MIDLEG (SCM) TITLE 2 IN COMPLEX WITH DI-METHYL LYSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCOMB PROTEIN SCM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES:175-435; COMPND 5 SYNONYM: SEX COMB ON MIDLEG PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SCM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MBT REPEAT, POLYCOMB, SEX COMB ON MIDLEG, DI-METHYL LYSINE, CHROMATIN KEYWDS 2 REGULATOR, DEVELOPMENTAL PROTEIN, METAL-BINDING, NUCLEUS, REPRESSOR, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR C.GRIMM,U.STEUERWALD,C.W.MUELLER REVDAT 6 30-AUG-23 2R58 1 REMARK REVDAT 5 20-OCT-21 2R58 1 REMARK SEQADV REVDAT 4 13-JUL-11 2R58 1 VERSN REVDAT 3 24-FEB-09 2R58 1 VERSN REVDAT 2 29-JAN-08 2R58 1 JRNL REVDAT 1 30-OCT-07 2R58 0 JRNL AUTH C.GRIMM,A.G.DE AYALA ALONSO,V.RYBIN,U.STEUERWALD, JRNL AUTH 2 N.LY-HARTIG,W.FISCHLE,J.MULLER,C.W.MULLER JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSES OF METHYL-LYSINE BINDING JRNL TITL 2 BY THE MALIGNANT BRAIN TUMOUR REPEAT PROTEIN SEX COMB ON JRNL TITL 3 MIDLEG. JRNL REF EMBO REP. V. 8 1031 2007 JRNL REFN ISSN 1469-221X JRNL PMID 17932512 JRNL DOI 10.1038/SJ.EMBOR.7401085 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 16819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 907 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 945 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1661 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -1.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.816 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1722 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2339 ; 1.222 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 5.554 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;31.560 ;24.819 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;15.035 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.248 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 242 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1353 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 754 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1159 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 136 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.157 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1098 ; 0.655 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1719 ; 1.043 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 723 ; 1.563 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 620 ; 2.297 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3970 -10.4660 -27.0150 REMARK 3 T TENSOR REMARK 3 T11: 0.0353 T22: 0.1647 REMARK 3 T33: -0.0744 T12: 0.1259 REMARK 3 T13: 0.0826 T23: -0.0865 REMARK 3 L TENSOR REMARK 3 L11: 8.1412 L22: 13.7253 REMARK 3 L33: 9.1113 L12: -6.2333 REMARK 3 L13: -2.7672 L23: 2.9173 REMARK 3 S TENSOR REMARK 3 S11: 0.3545 S12: -0.0317 S13: 0.3270 REMARK 3 S21: -0.2079 S22: -0.0001 S23: -0.8150 REMARK 3 S31: 0.6919 S32: 1.1398 S33: -0.3544 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 196 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): -26.9790 3.8810 -11.6870 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.0663 REMARK 3 T33: 0.0035 T12: -0.0554 REMARK 3 T13: 0.0346 T23: -0.0704 REMARK 3 L TENSOR REMARK 3 L11: 1.9722 L22: 1.9006 REMARK 3 L33: 2.5723 L12: -0.6156 REMARK 3 L13: -0.5621 L23: -0.1389 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: -0.3512 S13: 0.2241 REMARK 3 S21: -0.1967 S22: 0.1387 S23: -0.3516 REMARK 3 S31: -0.3227 S32: 0.0900 S33: -0.1080 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): -28.7510 0.7010 -11.1730 REMARK 3 T TENSOR REMARK 3 T11: 0.1393 T22: 0.0791 REMARK 3 T33: -0.0349 T12: -0.0313 REMARK 3 T13: 0.0500 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 2.9154 L22: 2.3898 REMARK 3 L33: 2.7624 L12: -0.5439 REMARK 3 L13: -0.5875 L23: 0.2990 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: -0.2059 S13: -0.0775 REMARK 3 S21: -0.3049 S22: 0.0493 S23: -0.2559 REMARK 3 S31: 0.0251 S32: 0.0670 S33: 0.0037 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 264 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): -39.1540 12.1670 -12.6690 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.0732 REMARK 3 T33: -0.0783 T12: 0.0323 REMARK 3 T13: 0.0010 T23: -0.0599 REMARK 3 L TENSOR REMARK 3 L11: 5.1940 L22: 46.4046 REMARK 3 L33: 5.3474 L12: 11.6722 REMARK 3 L13: -3.2241 L23: -8.4070 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: -0.1212 S13: 0.4807 REMARK 3 S21: -0.0276 S22: 0.3248 S23: 0.5634 REMARK 3 S31: -0.5760 S32: -0.2408 S33: -0.2768 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 283 REMARK 3 ORIGIN FOR THE GROUP (A): -47.4990 2.7110 -5.9850 REMARK 3 T TENSOR REMARK 3 T11: -0.0506 T22: 0.5526 REMARK 3 T33: -0.2563 T12: 0.1323 REMARK 3 T13: 0.0388 T23: 0.1569 REMARK 3 L TENSOR REMARK 3 L11: 3.3940 L22: 30.5329 REMARK 3 L33: 24.2677 L12: 10.1360 REMARK 3 L13: 3.8358 L23: 9.1680 REMARK 3 S TENSOR REMARK 3 S11: 0.4662 S12: -1.8425 S13: -1.2569 REMARK 3 S21: -0.9217 S22: 0.4834 S23: 2.0328 REMARK 3 S31: -0.8149 S32: -3.1948 S33: -0.9496 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 284 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): -29.0160 9.7010 -6.8040 REMARK 3 T TENSOR REMARK 3 T11: 0.2097 T22: 0.0130 REMARK 3 T33: -0.0454 T12: -0.0011 REMARK 3 T13: 0.0397 T23: -0.1076 REMARK 3 L TENSOR REMARK 3 L11: 7.9821 L22: 3.4669 REMARK 3 L33: 5.1804 L12: -0.8134 REMARK 3 L13: -3.8331 L23: 0.6246 REMARK 3 S TENSOR REMARK 3 S11: 0.4270 S12: -0.7724 S13: 0.6326 REMARK 3 S21: 0.1025 S22: -0.0532 S23: -0.3761 REMARK 3 S31: -0.9488 S32: 0.3094 S33: -0.3738 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 309 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2690 -4.4700 -31.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.0617 REMARK 3 T33: -0.0256 T12: 0.1000 REMARK 3 T13: 0.1516 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 4.1022 L22: 3.1212 REMARK 3 L33: 5.9557 L12: -2.1262 REMARK 3 L13: -0.0062 L23: 0.8763 REMARK 3 S TENSOR REMARK 3 S11: 0.5751 S12: 0.6111 S13: 0.2845 REMARK 3 S21: -0.6317 S22: -0.4652 S23: -0.2532 REMARK 3 S31: -0.3884 S32: 0.2606 S33: -0.1100 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 325 A 356 REMARK 3 ORIGIN FOR THE GROUP (A): -22.8630 -12.3390 -27.6380 REMARK 3 T TENSOR REMARK 3 T11: 0.1526 T22: 0.0640 REMARK 3 T33: 0.0048 T12: 0.0145 REMARK 3 T13: 0.0129 T23: -0.1081 REMARK 3 L TENSOR REMARK 3 L11: 4.3150 L22: 4.2362 REMARK 3 L33: 11.2007 L12: -1.2476 REMARK 3 L13: -3.1627 L23: -0.7239 REMARK 3 S TENSOR REMARK 3 S11: 0.3614 S12: 0.6808 S13: -0.4312 REMARK 3 S21: -0.3911 S22: -0.1993 S23: 0.3679 REMARK 3 S31: 0.8167 S32: -0.7517 S33: -0.1621 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 357 A 369 REMARK 3 ORIGIN FOR THE GROUP (A): -21.5950 -2.9830 -27.5570 REMARK 3 T TENSOR REMARK 3 T11: 0.1481 T22: 0.0832 REMARK 3 T33: -0.0066 T12: 0.0824 REMARK 3 T13: 0.1159 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 3.5198 L22: 5.0652 REMARK 3 L33: 6.4227 L12: -0.0779 REMARK 3 L13: -1.9007 L23: 1.9959 REMARK 3 S TENSOR REMARK 3 S11: 0.5588 S12: 0.4042 S13: 0.3803 REMARK 3 S21: -0.5614 S22: -0.2541 S23: 0.1054 REMARK 3 S31: -0.3184 S32: -0.2743 S33: -0.3047 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 370 A 383 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9840 -12.3000 -17.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.0751 REMARK 3 T33: -0.0117 T12: 0.0848 REMARK 3 T13: 0.0521 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 6.3584 L22: 5.3420 REMARK 3 L33: 8.6222 L12: -1.3938 REMARK 3 L13: -0.0322 L23: 1.0633 REMARK 3 S TENSOR REMARK 3 S11: 0.2257 S12: -0.1409 S13: -0.3291 REMARK 3 S21: 0.0167 S22: -0.1711 S23: -0.3211 REMARK 3 S31: 0.9123 S32: 0.6119 S33: -0.0546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R58 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17807 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.04560 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2R57 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG3350, 100 MM CALCIUM REMARK 280 ACETATE AND 3% ETHANOL, PH 7.3, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.88400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.56000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.82600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.56000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.56000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.94200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.56000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.56000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.82600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.56000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.56000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.94200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.88400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 467 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 171 REMARK 465 ALA A 172 REMARK 465 MET A 173 REMARK 465 SER A 386 REMARK 465 ARG A 387 REMARK 465 MET A 388 REMARK 465 ASP A 389 REMARK 465 SER A 390 REMARK 465 SER A 391 REMARK 465 SER A 392 REMARK 465 SER A 393 REMARK 465 LYS A 394 REMARK 465 GLN A 395 REMARK 465 ARG A 396 REMARK 465 CYS A 397 REMARK 465 PRO A 398 REMARK 465 ARG A 399 REMARK 465 PRO A 400 REMARK 465 ARG A 401 REMARK 465 TYR A 402 REMARK 465 THR A 403 REMARK 465 VAL A 404 REMARK 465 VAL A 405 REMARK 465 ALA A 406 REMARK 465 GLU A 407 REMARK 465 SER A 408 REMARK 465 GLU A 409 REMARK 465 ALA A 410 REMARK 465 MET A 411 REMARK 465 VAL A 412 REMARK 465 PRO A 413 REMARK 465 ALA A 414 REMARK 465 SER A 415 REMARK 465 PRO A 416 REMARK 465 ALA A 417 REMARK 465 THR A 418 REMARK 465 ALA A 419 REMARK 465 HIS A 420 REMARK 465 PHE A 421 REMARK 465 HIS A 422 REMARK 465 PRO A 423 REMARK 465 ASN A 424 REMARK 465 CYS A 425 REMARK 465 LYS A 426 REMARK 465 GLY A 427 REMARK 465 GLY A 428 REMARK 465 PRO A 429 REMARK 465 PHE A 430 REMARK 465 ILE A 431 REMARK 465 ASN A 432 REMARK 465 ASN A 433 REMARK 465 SER A 434 REMARK 465 LYS A 435 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 451 O HOH A 600 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 242 -120.77 -105.88 REMARK 500 ASP A 341 -112.03 55.62 REMARK 500 PRO A 382 151.88 -49.49 REMARK 500 HIS A 384 31.05 -95.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLY A 436 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R57 RELATED DB: PDB REMARK 900 SAME PROTEIN APO FORM REMARK 900 RELATED ID: 2R5A RELATED DB: PDB REMARK 900 SAME PROTEIN WITH METHYL LYSINE REMARK 900 RELATED ID: 2R5M RELATED DB: PDB REMARK 900 SAME PROTEIN WITH PEPTIDE R-(ME)K-S DBREF 2R58 A 175 435 UNP Q9VHA0 SCM_DROME 175 435 SEQADV 2R58 GLY A 171 UNP Q9VHA0 EXPRESSION TAG SEQADV 2R58 ALA A 172 UNP Q9VHA0 EXPRESSION TAG SEQADV 2R58 MET A 173 UNP Q9VHA0 EXPRESSION TAG SEQADV 2R58 ALA A 174 UNP Q9VHA0 EXPRESSION TAG SEQADV 2R58 CYS A 277 UNP Q9VHA0 ARG 277 ENGINEERED MUTATION SEQRES 1 A 265 GLY ALA MET ALA PHE ASP TRP ASP ALA TYR LEU GLU GLU SEQRES 2 A 265 THR GLY SER GLU ALA ALA PRO ALA LYS CYS PHE LYS GLN SEQRES 3 A 265 ALA GLN ASN PRO PRO ASN ASN ASP PHE LYS ILE GLY MET SEQRES 4 A 265 LYS LEU GLU ALA LEU ASP PRO ARG ASN VAL THR SER THR SEQRES 5 A 265 CYS ILE ALA THR VAL VAL GLY VAL LEU GLY SER ARG LEU SEQRES 6 A 265 ARG LEU ARG LEU ASP GLY SER ASP SER GLN ASN ASP PHE SEQRES 7 A 265 TRP ARG LEU VAL ASP SER THR GLU ILE HIS ALA ILE GLY SEQRES 8 A 265 HIS CYS GLU LYS ASN GLY GLY MET LEU GLN PRO PRO LEU SEQRES 9 A 265 GLY PHE CYS MET ASN ALA SER SER TRP PRO GLY TYR LEU SEQRES 10 A 265 CYS LYS ILE LEU ASN ASN ALA MET VAL ALA PRO GLU GLU SEQRES 11 A 265 ILE PHE GLN PRO GLU PRO PRO GLU PRO GLU GLU ASN LEU SEQRES 12 A 265 PHE LYS VAL GLY GLN LYS LEU GLU ALA VAL ASP LYS LYS SEQRES 13 A 265 ASN PRO GLN LEU ILE CYS CYS ALA THR VAL ASP ALA ILE SEQRES 14 A 265 LYS ASP ASP GLN ILE HIS VAL THR PHE ASP GLY TRP ARG SEQRES 15 A 265 GLY ALA PHE ASP TYR TRP CYS ASN TYR ARG SER ARG ASP SEQRES 16 A 265 ILE PHE PRO ALA GLY TRP CYS ALA ARG SER CYS HIS PRO SEQRES 17 A 265 MET GLN PRO PRO GLY HIS LYS SER ARG MET ASP SER SER SEQRES 18 A 265 SER SER LYS GLN ARG CYS PRO ARG PRO ARG TYR THR VAL SEQRES 19 A 265 VAL ALA GLU SER GLU ALA MET VAL PRO ALA SER PRO ALA SEQRES 20 A 265 THR ALA HIS PHE HIS PRO ASN CYS LYS GLY GLY PRO PHE SEQRES 21 A 265 ILE ASN ASN SER LYS HET MLY A 436 12 HETNAM MLY N-DIMETHYL-LYSINE FORMUL 2 MLY C8 H18 N2 O2 FORMUL 3 HOH *172(H2 O) HELIX 1 1 ASP A 176 THR A 184 1 9 HELIX 2 2 PRO A 190 PHE A 194 5 5 HELIX 3 3 GLY A 261 ASN A 266 1 6 HELIX 4 4 ASN A 279 SER A 281 5 3 HELIX 5 5 SER A 282 ASN A 292 1 11 HELIX 6 6 PRO A 298 PHE A 302 5 5 HELIX 7 7 ARG A 352 ASP A 356 5 5 HELIX 8 8 GLY A 370 CYS A 376 1 7 SHEET 1 A 5 PHE A 248 LEU A 251 0 SHEET 2 A 5 ARG A 234 LEU A 239 -1 N LEU A 237 O PHE A 248 SHEET 3 A 5 ASN A 218 LEU A 231 -1 N GLY A 229 O ARG A 236 SHEET 4 A 5 LYS A 210 ASP A 215 -1 N ALA A 213 O CYS A 223 SHEET 5 A 5 ILE A 257 HIS A 258 -1 O HIS A 258 N GLU A 212 SHEET 1 B 5 TYR A 357 ASN A 360 0 SHEET 2 B 5 GLN A 343 PHE A 348 -1 N VAL A 346 O TYR A 357 SHEET 3 B 5 ILE A 331 LYS A 340 -1 N ASP A 337 O HIS A 345 SHEET 4 B 5 LYS A 319 VAL A 323 -1 N ALA A 322 O CYS A 332 SHEET 5 B 5 ILE A 366 PHE A 367 -1 O PHE A 367 N GLU A 321 SITE 1 AC1 7 ASP A 324 ASN A 327 CYS A 332 TRP A 351 SITE 2 AC1 7 ARG A 352 PHE A 355 HOH A 608 CRYST1 83.120 83.120 75.768 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012031 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013198 0.00000